LOC110525707 (LOC106585266)


Basic Information

Item Value
gene id LOC110525707
gene name LOC106585266
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30113898 ~ 30154830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979816.1
GTCGTAGTGGACGTTTGCGTACGGAACCGGCCGAAAGAGTGTTCACATTCACAATTTAAAGGGCAAAGGCTACTAAACAGTCCAATAAATAACAGTTTAATCGACGCAGTACTTGCATTCGTCGTGTAACCGTTTTATCATTCAGACTATAAACTGATAAGCGCAACGGGTGAATATGGACGTACGCCTGGTTTGTTTATGAAATGTAGCCTATCTTTTTCTCGTGAGCGTGGATTTGGAACCTTGCAAAAGTTCACTTGGTAGCTCATCTGCTCGCCAGTGTGGAACGGGCTGTGATGTCGATGGTTTCATTTGAAGAACGTCAGGCAGGTCTGATATTATAACAGTATTGTAACGTGGAAGGCTATTTAAACCTCATCCTCTGACAAGGCGTAAATACAGTAATAGCTCAGACCTATTCATCCCCAGGAGAGGTTGCGCCGAACAAGCATCAGGCGATACTCTAAATTAACTAACCAATCCTTCATTCGGAGGGTTTATCTCGTCGCCTGTCATCCTTTCATCTGTGATATTGACTGAACAGTGAGCATCTCGGAGATGGATCTAGACAACCAGAACCAAAGCCAGCCCCACCCTGAGAACCCATCTGGACTATCAGAGGTTTTAACCCCCACTCCAGCAGCACCTCCAGGCACAGAAACGCCAACCTCTGAACCCTGCGCCAATGCTCCTGCTCCTCAACCGTCAGTCCCAGCCCGGCCTCGACGGCCTCAGAGGACCCCCAGAGTAGAGGGCTCTGTAGACGTCTGTGAGCCCACACCTGACCCCACAGACGCTAACCAGGACAGATCCACTCCTGATGCTCCAGCTGTGGCCAGCCGTCATAAGCCCCTGCGCCCTGGAGGAGCCAAGCCCCCTGGGGGGCCTGGAGAGCCAGTGGGGTACACTGAAACCACTCTGAAGGCTGGCCCTAAAGTCCCAGGCCACCCCCCTGGGGCCCGGAACCCCATCTCAATGAGGGCAGCCTCAGTGCCCCAGCCACCGCCCTCCAGGCCTATACCTCCCCACCTCAACCCTCATGCCCAGAGGGCCTTCTCCGTGTCGGGCACCGCGGACACACAGGCCCAGGTGGTAGAAGACTTCAGAGTGCACATAATAACATGGAATGTGGGCGGTGCCATGCCGCCGGATGACATCACTGCTCTGCTGGGATTGCACGTTGGGGATGGAAACACAGACATGTATATCATTGGGCTACAGGAAGTCAACTCCATGATCAACAAAAGGCTGAAAGACGTTCTCTTCACAGACCAATGGAGTGATGCCTGCATGGAGAGACTCAGCCCCTTCGGATACATACTGGTGACGTCTCAGCGGATGCAGGGGGTGTTGTTGCTGGTGTTTGCTAAGTACTACCACCTCCCCTTCCTCCGAGGGGTGCAGACAGAGACCACCCGCACTGGCTTGGGGGGCTACTGGGGTAATAAAGGGGGTGTGAGTGCGCGCATGTCTGTGTTCGGTCACACCATCTGTTTCCTGAACTGCCACCTGCCGGCCCACATGGAGAACTCTGAGCAGCGCATGGAGGACTTTGAGAGCatcctgcagcagcagcagtttgAAGGCCAGGCTGCCACAGGGGTGCTCGACCACGATGTGGTGTTCTGGTTTGGAGATCTGAATTTCCGCATTGATGAACTGGAGATTCCGGCAGTGAAAACAGCCATTGATAACAATAAACTCACCATGCTGTGGGAGAAAGACCAGctgaacatggCCAAAGACAGCGAGACGGTGCTGGTGGGCTTTCTGGAGGGACCTCTCAAATTCCCCCCTACTTACAAGTTTGACGTGGGGACAGATACATATGATACAAGtgggaAGAAGCGTAAGCCTGCGTGGACAGACAGGATCCTGTGGCGTCTGAGGGCCACAGCTCCCTTTGGGCAGGCCCCTAATGCTCGGAAGAGAGGCTCTGTGTCAGGACTGAGCAGCGGGACCAAGGTCACCCAGCACTTCTATCGCAGTCACATGGAGTACATGGTCAGCGACCACAAGCCTGTCTCTTCCATCTTCACCCTCCAGTTCCCCTATAAGGTGGACATGCCACTGGTGACAATCATGGTGGAGGATGAGTGGAACAGCATTGCAGACGCCACGTGCACATTCAAAGCTGCACCTAATTTCGCACGCAGCTCCTGGGACTGGATTGGGCTGTACAAGGTGGGATTCAAACACCATAAGGactatgtaggctatgtgtgggcCAAGCAGGAGGAGGCAGATTACCATAGAGTAGAACACGAGGTGACCTTTACTGAGGAAGAATTGCCCAAGGGCTCAGGAGACTTTATTTTGTGTTACTATAGCAACAACACGAGCACCCTCGTGGGTGTGACAGAGCCTTTTCAGATCCAGCTGCCCACCTCCAGCCCCGCCGGTAGCCCCTCTGACGACAGTTCTGACTTCACCTCTGAGGACGACAGCACAGTGGACGGTATGAAGACCAAGTCCCGCAGTCCCAGCCCCCGGAAAAAGAAGCAGAGAACACGGCACAGACAAAGCCGCAGTCCCAGCCACAGCCGTAGCCGCAGTGGCAGCCCTGCTCTGCCCGAAATGAAGGGCCTCAAGCTGCAGCCTGGCTTGGCCCACAACACCACTGATGGCTCTGCCTCTGGCAATGCCCCAGAGGGTACGGATCGGGAGAAGGTCTCAGCTGAGGCTGGAAatacagggttgtgatggagcccCTGTTATACTGCTCTCCCATTACCAACTATGTGTGGTTTCTTGATACATGatgcactgtactgtattgtatgttTCCTTTATTGAAAATGTACATTTGCAGATGCCATTTGTTTCAGaactggggttaggcttctGGTGCAGGAAGACTACTTTGTCTTGTGTGATTTTTCTTAAGCGGTTTTCAAGTGTATATCTATCTCCCTGTAGGTTCTCTCACTCTTCCCTCTCAGGCATAGAACATACAGGGAGCTTTTGGCTGATTTCAATAGGTCCTTACATGGCAAATCATTCCCAAATCCCAGGCAGAGGGAAATTGCTACCAAATGCATTTCGGGTCCATATCGGCAGTTGTTTCACAGATATTTTGAAGCAGCATAATATTTCCCCCTCTATATCAGCCCTGGTGGCTTAGTCAGCAGATCAGCATGTGTGCGAGCATGAGGAAATGCTGTCTCCCGATGAGGAGACAATTAGTTTGACTCCCAAAGGGAACATTCCTCGCAAATAGGAATAATCCCTATTTGCTTTAGCAGGTCCTGTCCTACATTTCAATAGAGCATTGTGTCTACTGCTACATACATTCTCTAAAGGGACAAGGTTACCATGGACAAAACCATTTGTCACAGTATGTGCAACCCCTTGTGAGTTGAGAGCGCATCTCTGAGCGGCAGGTCTTTGTAAAACTATCCTTAGGCCTGGCTGCATGGGTCACTTAAATGCCATGGTGAAAAAACAAGGTCAAAAATGGTAATGTTCACCTTCAGGTTACTGATGTTCCCAGTTgtcctctttccttccctccccatctctatatctctcttcttatgtcccctctctctctctctttctctttgggTGAAGGTGATTAGCAGACACTGTTATGTCACTAGTAGTAATGTGTTGAATTGTTAGCGTGTGACCTCCAATGAGCCATCCTAAACACTTTGTACCTATGGGCTGTTAGCTTAGGACAGTGTGTGCTGTTGTACTGTaacctcattgtgtgtgtgttcatgtaagTATGCCACTGTATGAGTGTGTCTTATGAACGTTTGGGTTTGCAGAAGTgagtgtgtatttctgtgtgattgATAGTGATGTGTGTATGTGCTTGCATGGTTTTCTGGACTGTACATTCCGGTACTGTGATTTTGTGCTGTTACAAGTGCTGTTTTTGACTCTTTGTAAGATACTTAGCTGTTGAGAAGTGTTAGGAAAAACATGTGATGATGACAGTGTAAACACAACATTATAATGGTAGATATAGCTACAGTTTGCTAGCAGAACAACAAGAAatacttgtatttattttattcaatTCAATTATTTTCATCCTATttaaaatatacaaaatacaaTGTAGAGAGTTTGAAGCTCATCCAAGGTAAAGGATCAGTGGTGCATATGTGCAAGTGAACTtggcttttgttgttgttgttgttaggtatTGATTATGTGTATCAATTAATATAACTGAATTGATCCAAAGTACGGTTATAGAAAAGGTGATAAGGAAAGACTAGATCTGAAAATCAAGTTGAATTGTCCTTTGTTGTTTTAGTCTTTGGCAACGTCTCGCTCCCATACTATACGTGCAATGAAAAATATGTGAATAGTAACTAAGAAATGTTATTGAAAGCTTCtaatatgtttttaaaaaatgagaGTAGGTTATGTATGTCAATGACAAATGTCAAATAGAGAACAGATGACAATCAATGCCCAAAAAGATTATTATACTTAAACATTATgcatttattttcttattttgtgTCAAAAGAGAGCCTGAATTCTGCTGGCCAGTGTGGGGGAACAAGGGTTTAAAGTTAAAAGTCCTATTCAATTTAATAGGCTATATTGTGTATACATATtggttttatatttattttacttttatattTATTCATGCACACAACAGTTTTATGTGGAGGCAAAAATAAACAACCTCTTTTCACTTGGTTTATCTGTGATTTCAGATCAAAAGTAGGTTTTGTGCATTGTATTGGCTCTGCAAGCTTGTATGTGATTGGGATCTGAGGAGACTGTCTTAAAACATCTGGGCAACATTACAGCAACATTGTCAGAGGCATGAATTGGCTAGTTGTTGAATGTTGATGTTGGAGGGTGGTGTGTGGAATCGTCCGCTGGGGTCAGGGCACAGAGGGAACCCCTCTGCTTTCCAGCTCAAcacctctgtcacacacacacacacgctgttcAGAGATCAAATAAAACTCCTCGTCAAGCTGTA
>TU561276
CACAACCTGGCTTTTAGATGGTGACAAGCAAGGGAGTCTACACGTTGGCAGTTAAGGAGTaacaaaaatatttatttaaataacTAACAAAGTGTAAAACTACAAAGGAAAACTAACCTGTGAAGTGTGAAAGTAGGCGTGTGagggttttttaaatgtattttttatttcacctttatttaaccaggtaggctagttgagaacaagttctcatttgcaactgcgacctggccaagataaagcgtagcaattcgacacatacaacaacagagttacacatggaataaacaaaacatacagtcaataatacagtagaacaaaagaaaacaaaaagtctatatacagtgagtgcaaatgagataAGTTAAgggaataaataggccatggtggcgaagtaattacaatatagcaattaaacactggaatggtagatcggcagaagatgaatgtgcaggtagagatactggggtgcaaaggagctaaataaataaatacccgtatggggatgaggtagACAATTAGTTTGACTCCCAAAGGGAACATTCCTCGCAAATAGGAATAATCCCTATTTGCTTTAGCAGGTCCTGTCCTACATTTCAATAGAGCATTGTGTCTACTGCTACATACATTCTCTAAAGGGACAAGGTTACCATGGACAAAACCATTTGTCACAGTATGTGCAACCCCTTGTGAGTTGAGAGCGCATCTCTGAGCGGCAGGTCTTTGTAAAACTATCCTTAGGCCTGGCTGCATGGGTCACTTAAATGCCATGGTGAAAAAACAAGGTCAAAAATGGTAATGTTCACCTTCAGGTTACTGATGTTCCCAGTTgtcctctttccttccctccccatctctatatctctcttcttatgtcccctctctctctctctttctctttgggTGAAGGTGATTAGCAGACACTGTTATGTCACTAGTAGTAATGTGTTGAATTGTTAGCGTGTGACCTCCAATGAGCCATCCTAAACACTTTGTACCTATGGGCTGTTAGCTTAGGACAGTGTGTGCTGTTGTACTGTaacctcattgtgtgtgtgttcatgtaagTATGCCACTGTATGAGTGTGTCTTATGAACGTTTGGGTTTGCAGAAGTgagtgtgtatttctgtgtgattgATAGTGATGTGTGTATGTGCTTGCATGGTTTTCTGGACTGTACATTCCGGTACTGTGATTTTGTGCTGTTACAAGTGCTGTTTTTGACTCTTTGTAAGATACTTAGCTGTTGAGAAGTGTTAGGAAAAACATGTGATGATGACAGTGTAAACACAACATTATAATGGTAGATATAGCTACAGTTTGCTAGCAGAACAACAAGAAatacttgtatttattttattcaatTCAATTATTTTCATCCTATttaaaatatacaaaatacaaTGTAGAGAGTTTGAAGCTCATCCAAGGTAAAGGATCAGTGGTGCATATGTGCAAGTGAACTtggcttttgttgttgttgttgttaggtatTGATTATGTGTATCAATTAATATAACTGAATTGATCCAAAGTACGGTTATAGAAAAGGTGATAAGGAAAGACTAGATCTGAAAATCAAGTTGAATTGTCCTTTGTTGTTTTAGTCTTTGGCAACGTCTCGCTCCCATACTATACGTGCAATGAAAAATATGTGAATAGTAACTAAGAAATGTTATTGAAAGCTTCtaatatgtttttaaaaaatgagaGTAGGTTATGTATGTCAATGACAAATGTCAAATAGAGAACAGATGACAATCAATGCCCAAAAAGATTATTATACTTAAACATTATgcatttattttcttattttgtgTCAAAAGAGAGCCTGAATTCTGCTGGCCAGTGTGGGGGAACAAGGGTTTAAAGTTAAAAGTCCTATTCAATTTAATAGGCTATATTGTGTATACATATtggttttatatttattttacttttatattTATTCATGCACACAACAGTTTTATGTGGAGGCAAAAATAAACAACCTCTTTTCACTTGGTTTATCTGTGATTTCAGATCAAAAGTAGGTTTTGTGCATTGTATTGGCTCTGCAAGCTTGTATGTGATTGGGATCTGAGGAGACTGTCTTAAAACATCTGGGCAACATTACAGCAACATTGTCAGAGGCATGAATTGGCTAGTTGTTGAATGTTGATGTTGGAGGGTGGTGTGTGGAATCGTCCGCTGGGGTCAGGGCACAGAGGGAACCCCTCTGCTTTCCAGCTCAAcacctctgtcacacacacacacacgctgttcAGAGATCAAATAAAACTCCTCGTCAAGCTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979816.1 False 4963 mRNA 0.47 14 30113898 30154830
TU561276 True 2298 lncRNA 0.38 2 30117505 30154829

Neighbor

gene id symbol gene type direction distance location
LOC110526722 LOC106585267 coding upstream 10012 30017557 ~ 30103886 (+)
LOC110525704 LOC106585268 coding upstream 98474 30003075 ~ 30015424 (+)
LOC110525705 LOC101160416 coding upstream 110955 29996792 ~ 30002943 (+)
LOC110525702 LOC106585272 coding upstream 150651 29884356 ~ 29963247 (+)
LOC110525701 LOC106585276 coding upstream 233247 29871980 ~ 29880651 (+)
LOC110525708 LOC106585265 coding downstream 9164 30163994 ~ 30178378 (+)
LOC110525710 LOC106585262 coding downstream 37458 30192288 ~ 30199714 (+)
LOC110526737 NA coding downstream 77762 30232592 ~ 30242415 (+)
LOC110525712 LOC106585261 coding downstream 93069 30247899 ~ 30283522 (+)
LOC110525713 LOC106585259 coding downstream 273622 30428452 ~ 30506065 (+)
G494062 NA non-coding upstream 35071 30078556 ~ 30078827 (+)
G494018 NA non-coding upstream 139781 29973546 ~ 29974117 (+)
G493946 NA non-coding upstream 145707 29963632 ~ 29968191 (+)
G494015 NA non-coding upstream 154280 29959302 ~ 29959618 (+)
G494014 NA non-coding upstream 162963 29950735 ~ 29950935 (+)
G494114 NA non-coding downstream 65376 30220206 ~ 30220479 (+)
G494117 NA non-coding downstream 70734 30225564 ~ 30225791 (+)
G494842 NA non-coding downstream 76327 30231157 ~ 30231363 (+)
G494911 NA non-coding downstream 145786 30300616 ~ 30300825 (+)
G494941 NA non-coding downstream 164202 30319032 ~ 30321886 (+)
G493450 NA other upstream 1123164 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1740706 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 2322328 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 2570903 27488557 ~ 27543022 (+)
G494946 NA other downstream 167192 30322022 ~ 30344847 (+)
G494943 NA other downstream 281132 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 363146 30517976 ~ 30523383 (+)
G495076 LOC106585256 other downstream 421275 30576105 ~ 30576756 (+)
G495132 NA other downstream 577522 30732352 ~ 30732890 (+)

Expression

LOC110525707(LOC106585266) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110525707(LOC106585266) Expression in each Bioproject

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LOC110525707(LOC106585266) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network