4ebp2 (LOC106585258)


Basic Information

Item Value
gene id 4ebp2
gene name LOC106585258
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30517976 ~ 30523383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165149.2
GAGTGCGTGTTGAGTGTGGAAGAACGTGTGCTGCTAAGGTCGTACAGAACCTAGTCTGTCGGTCTGCGTGTGGGAATGTGTGGTTAGTTTAGATATTCAACATTATTTGCACTTATGACAAaataaagtatttgtttttatttaggaATTAGCTTGCTAACGACCCAAAGCAAATAATTGAGGAAGCAGCAACAGGGCACGTTGTTTGCTTTGTTGTTTTTCAGGTCCAAGATATTTAGTTAAGTTGTCCAATTTGTAGTTATTAGCAAACGCCCCTGTGTTTTGAAGATGTCTACGGGCTGTCAGAAGACCACTACTAGCAAGGCCATTCCGACCAGGCGGGTGACCATAAACGACGCCTCGCACATGCCCAACGACTACTCCACTACTCCCGGGGGAACTCTGTTCAGCACAACACCTGGaggtACAAGAATCATCTACGACCGGAAGTTCCTGCTGGAGTGCCGCAGTTCCCCGCTGGCCAGGACTCCACCGTGCTCTCTCCCCAACATTCCAGGGGTCACCAGCCCACCCTCCAAACACATCAACAATGTAAAGGCCCATAACAGAGAGCCACTGAACAACAACATCACTGCACCTGCTGACAAAAGCACTGgtgACGATGCACAGTTTGAAATGGACATCTAACTGTTGGTGGAATGAGCATTCAAGAGGGATGTGAAACAACTTCACTTACTACCATGATGCTGAAGAAGAGGCCCAACCAATCCCCCACCCAGACTTGCTACAATATTGTCACCTTCTGTGTTTACAGATGAGTCCATTAGTTGCGGTTTGTTAACTTTAAATATCAGCTGTATTGTTACTGTAAAATAACACGAAGGTGGTTCAGGCGTGTGAATGAAGTGTTACCCTCTTGACTCACCTCTGGGGCCTTTCTCTTGTGGAGCCAGCAGCAACACTGAAAAAGATTGCTCCAGAGGAGCGGTGTGGTGGTAAAGATtcaatttctttcattctttaaAATTATTTTGCCACTCAAATCAATCTTATCATGGGTTATCCACACTTCACTGCCTTCAAAATACTATTATTTTTTTCAGATAAAAAGATTGTCATACAAAGGACTGTAAAAACTATATATAGAGAAATTTGAGACAAAAAACTACATTTTCACATGGTTTGTAAGAAGAATCAATAAAGAAAATAAAACCT
>TU562306
AGCAGCTCTTTCCTGTCTGTTTTTGAGTGCGTGTTGAGTGTGGAAGAACGTGTGCTGCTAAGGTCGTACAGAACCTAGTCTGTCGGTCTGCGTGTGGGAATGTGTGGTTAGTTTAGATATTCAACATTATTTGCACTTATGACAAaataaagtatttgtttttatttaggaATTAGCTTGCTAACGACCCAAAGCAAATAATTGAGGAAGCAGCAACAGGGCACGTTGTTTGCTTTGTTGTTTTTCAGGTCCAAGATATTTAGTTAAGTTGTCCAATTTGTAGTTATTAGCAAACGCCCCTGTGTTTTGAAGATGTCTACGGGCTGTCAGAAGACCACTACTAGCAAGGCCATTCCGACCAGGCGGGTGACCATAAACGACGCCTCGCACATGCCCAACGACTACTCCACTACTCCCGGGGGAACTCTGTTCAGCACAACACCTGGaggtACAAGAATCATCTACGACCGGAAGTTCCTGCTGGAGTGCCGCAGTTCCCCGCTGGCCAGGACTCCACCGTGCTCTCTCCCCAACATTCCAGGGGTCACCAGCCCACCCTCCAAACACATCAACAATGTAAAGGCCCATAACAGAGAGCCACTGAACAACAACATCACTGCACCTGCTGACAAAAGCACTGgtgACGATGCACAGTTTGAAATGGACATCTAACTGTTGGTGGAATGAGCATTCAAGAGGGATGTGAAACAACTTCACTTACTACCATGATGCTGAAGAAGAGGCCCAACCAATCCCCCACCCAGACTTGCTACAATATTGTCACCTTCTGTGTTTACAGATGAGTCCATTAGTTGCGGTTTGTTAACTTTAAATATCAGCTGTATTGTTACTGTAAAATAACACGAAGGTGGTTCAGGCGTGTGAATGAAGTGTTACCCTCTTGACTCACCTCTGGGGCCTTTCTCTTGTGGAGCCAGCAGCAACACTGAAAAAGATTGCTCCAGAGGAGCGGTGTGGTGGTAAAGATtcaatttctttcattctttaaAATTATTTTGCCACTCAAATCAATCTTATCATGGGTTATCCACACTTCACTGCCTTCAAAATACTATTATTTTTTTCAGATAAAAAGATTGTCATACAAAGGACTGTAAAAACTATATATAGAGAAATTTGAGACAAAAAACTACATTTTCACATGGTTTGTAAGAAGAATCAATAAAGAAAATAAAACCTA
>TU562307
AGCAGCTCTTTCCTGTCTGTTTTTGAGTGCGTGTTGAGTGTGGAAGAACGTGTGCTGCTAAGGTCGTACAGAACCTAGTCTGTCGGTCTGCGTGTGGGAATGTGTGGTTAGTTTAGATATTCAACATTATTTGCACTTATGACAAaataaagtatttgtttttatttaggaATTAGCTTGCTAACGACCCAAAGCAAATAATTGAGGAAGCAGCAACAGGGCACGTTGTTTGCTTTGTTGTTTTTCAGGTCCAAGATATTTAGTTAAGTTGTCCAATTTGTAGTTATTAGCAAACGCCCCTGTGTTTTGAAGATGTCTACGGGCTGTCAGAAGACCACTACTAGCAAGGCCATTCCGACCAGGCGGGTGACCATAAACGACGCCTCGCACATGCCCAACGACTACTCCACTACTCCCGGGGGAACTCTGTTCAGCACAACACCTGGaggtACAAGAATCATCTACGACCGGAAGTTCCTGCTGGAGTGCCGCAGTTCCCCGCTGGCCAGGACTCCACCGTGCTCTCTCCCCAACATTCCAGGGGTCACCAGCCCACCCTCCAAACACATCAACAATGTAAAGGCCCATAACAGAGAGCCACTGAACAACAACATCACTGCACCTGCTGACAAAAGCACTGgtgACGATGCACAGTTTGAAATGGACATCTAACTGTTGGTGGAATGAGCATTCAAGAGGGATGTGAAACAACTTCACTTACTACCATGATGCTGAAGAAGAGGCCCAACCAATCCCCCACC

Function

NR:

description
PREDICTED: eukaryotic translation initiation factor 4E-binding protein 2-like

GO:

id name namespace
GO:0045947 negative regulation of translational initiation biological_process
GO:0008190 eukaryotic initiation factor 4E binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165149.2 False 1176 mRNA 0.43 3 30518000 30523382
TU562306 False 1201 TUCP 0.43 3 30517976 30523383
TU562307 True 761 TUCP 0.48 3 30517976 30522943

Neighbor

gene id symbol gene type direction distance location
LOC110525713 LOC106585259 coding upstream 11935 30428452 ~ 30506065 (+)
LOC110525712 LOC106585261 coding upstream 234478 30247899 ~ 30283522 (+)
LOC110526737 NA coding upstream 275585 30232592 ~ 30242415 (+)
LOC110525710 LOC106585262 coding upstream 318286 30192288 ~ 30199714 (+)
LOC110525708 LOC106585265 coding upstream 339622 30163994 ~ 30178378 (+)
LOC110525716 LOC106585257 coding downstream 29179 30552561 ~ 30559796 (+)
si:ch211-225b11.4 LOC106584980 coding downstream 483165 31006547 ~ 31022524 (+)
LOC110525729 p3ip1 coding downstream 502399 31025781 ~ 31037928 (+)
LOC110525731 LOC106584982 coding downstream 575685 31099067 ~ 31150187 (+)
LOC110525733 LOC106584983 coding downstream 691694 31215076 ~ 31305586 (+)
G495029 NA non-coding upstream 46282 30471416 ~ 30471718 (+)
G495027 NA non-coding upstream 57556 30459865 ~ 30460444 (+)
G494961 NA non-coding upstream 166058 30350947 ~ 30351942 (+)
G494948 NA non-coding upstream 189972 30326128 ~ 30328028 (+)
G494941 NA non-coding upstream 196114 30319032 ~ 30321886 (+)
G495053 NA non-coding downstream 9048 30532430 ~ 30532705 (+)
G495066 LOC106585256 non-coding downstream 41873 30565255 ~ 30565827 (+)
G495067 NA non-coding downstream 42499 30565881 ~ 30566203 (+)
G495071 NA non-coding downstream 47108 30570490 ~ 30571002 (+)
G494943 NA other upstream 81315 30435962 ~ 30436685 (+)
G494946 NA other upstream 173153 30322022 ~ 30344847 (+)
G494065 NA other upstream 388231 30084584 ~ 30129769 (+)
LOC110525701 LOC106585276 other upstream 637351 29871980 ~ 29880651 (+)
G493450 NA other upstream 1527266 28989430 ~ 28990734 (+)
G495076 LOC106585256 other downstream 52723 30576105 ~ 30576756 (+)
G495132 NA other downstream 208970 30732352 ~ 30732890 (+)
G495920 LOC106584987 other downstream 771564 31294946 ~ 31312737 (+)
polk polk other downstream 2404536 32926258 ~ 32936958 (+)

Expression


Co-expression Network