gatc (gatc)


Basic Information

Item Value
gene id gatc
gene name gatc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31652136 ~ 31656299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606156.2
ACGTAATTGATAGactttgctagctagccagctagctgttGACTGATATTATTTTTGAGTTCCAGGAATCAACGGAGACGCTCATAAAATCTACCTAACCATTGTTTAGTTTACTAAATTGACTAGCTAGCGACGCACAATTTCATTGTGATAGGCATTACATAGGCATTTGTAAGCTAGCTACATTAGCCAGCATAACATGTATGTCGTAGTGAATTATACACGAAGGTTACAGACCCTAGCATTTAATCTAGGGTCTTCGTGCTACCACCAAGGCGTCACAAGAGTTTCCATAACGTCACAGGACCGAAAATCCAGGCAAAACTTTAGCTGCTTTCGTTGGACTCATCTGATAACTTTAGTACATCAATATAGTACCCGAATTAGCAACTCTAAGGTGCCCAGGGTAGCAACATGGGAGCCTGTATTGGAGAGCCAGCTACCCCCACCTTGCCAAGTTCCTGTAGACCTTGTTGACAAATTGGAGCGACTAGCCCTGGTGGATTTCCGCAACCAGGAGGGGCTGGCCTGTCTGGAGAAAGCCATCCGATTTGCAGATCAACTCCATGTTGTTGACACAGATGGGGTTGACCCGATGGATTCAGTTCTGGAGGAAAGGGCACTGTATCTGAGGGAGGATGCCGTGGCAGAGGGGGACTGTGCAGAGGAACTGCTCCAGCTCTCCAAAAACACAGTGGAGGAGTACTTTGTGGCACCGCCAGGTAACATTCCACTCccgaagagagaggagagatctgCCATGTTTAAGCACTCCGAGTTCTGATTCAAAgacaatgacccaaaacacacctccaggctgtgtaagggctatttgaccaaggagagcaatgagtgc
>XM_021606154.2
CGTAATTGATAGactttgctagctagccagctagctgttGACTGATATTATTTTTGAGTTCCAGGAATCAACGGAGACGCTCATAAAATCTACCTAACCATTGTTTAGTTTACTAAATTGACTAGCTAGCGACGCACAATTTCATTGTGATAGGCATTACATAGGCATTTGTAAGCTAGCTACATTAGCCAGCATAACATGTATGTCGTAGTGAATTATACACGAAGGTTACAGACCCTAGCATTTAATCTAGGGTCTTCGTGCTACCACCAAGGCGTCACAAGAGTTTCCATAACGTCACAGGACCGAAAATCCAGGCAAAACTTTAGCTGCTTTCGTTGGACTCATCTGATAACTTTAGTACATCAATATAGTACCCGAATTAGCAACTCTAAGGTGCCCAGGGTAGCAACATGGGAGCCTGTATTGGAGAGCCAGCTACCCCCACCTTGCCAAGTTCCTGTAGACCTTGTTGACAAATTGGAGCGACTAGCCCTGGTGGATTTCCGCAACCAGGAGGGGCTGGCCTGTCTGGAGAAAGCCATCCGATTTGCAGATCAACTCCATGTTGTTGACACAGATGGGGTTGACCCGATGGATTCAGTTCTGGAGGAAAGGGCACTGTATCTGAGGGAGGATGCCGTGGCAGAGGGGGACTGTGCAGAGGAACTGCTCCAGCTCTCCAAAAACACAGTGGAGGAGTACTTTGTGGCACCGCCAGGTAACATTCCACTCccgaagagagaggagagatctgCCATGTTTAAGCACTCCGAGTTCTGATTCAAAGTATGTGCTCCGACTTTGCTGACAGCTAAATTTGACTGTGGTTTTCCCACCCatgtatcttaagatgaatgcactaaggagctctggataagagcgtttgcTAAATTAATGACTGGATACTGTATTTCATTTGACAGACCTCTGCAAAGAAATGCATGGCTAAATGATAAAGATTGACCAACCATCAAGAGGGTCAGGGCTTGGCATGTATTAAGGCACCTTCAAACCAGACAAACTGAAGCTAAATCAAAGAAAGATCCTCCAGTGTTGTTGATCTGTGTGTGTACTCCATGTATGCACTGTATTCTCTGAACAATATGTAGTGTCATTATGTTGAAAAAGCAGAACCATAACTCCCAATGGTACATACTTTGTGGGTGCTCTGCAAATGATTATCAAGGACTAAAGAGGCAGCCAATGAATGTACAATTCATGCATTCAGGAACTAAAACAAATAAACATACTAAGAG
>XM_021606155.2
ACGTAATTGATAGactttgctagctagccagctagctgttGACTGATATTATTTTTGAGTTCCAGGAATCAACGGAGACGCTCATAAAATCTACCTAACCATTGTTTAGTTTACTAAATTGACTAGCTAGCGACGCACAATTTCATTGTGATAGGCATTACATAGGCATTTGTAAGCTAGCTACATTAGCCAGCATAACATGTATGTCGTAGTGAATTATACACGAAGGTTACAGACCCTAGCATTTAATCTAGGGTCTTCGTGCTACCACCAAGGCGTCACAAGAGTTTCCATAACGTCACAGGACCGAAAATCCAGGCAAAACTTTAGCTGCTTTCGTTGGACTCATCTGATAACTTTAGTACATCAATATAGTACCCGAATTAGCAACTCTAAGGTGCCCAGGGTAGCAACATGGGAGCCTGTATTGGAGAGCCAGCTACCCCCACCTTGCCAAGTTCCTGTAGACCTTGTTGACAAATTGGAGCGACTAGCCCTGGTGGATTTCCGCAACCAGGAGGGGCTGGCCTGTCTGGAGAAAGCCATCCGATTTGCAGATCAACTCCATGTTGTTGACACAGATGGGGTTGACCCGATGGATTCAGTTCTGGAGGAAAGGGCACTGTATCTGAGGGAGGATGCCGTGGCAGAGGGGGACTGTGCAGAGGAACTGCTCCAGCTCTCCAAAAACACAGTGGAGGAGTACTTTGTGGCACCGCCAGGTAACATTCCACTCccgaagagagaggagagatctgCCATGTTTAAGCACTCCGAGTTCTGATTCAAAACCTCTGCAAAGAAATGCATGGCTAAATGATAAAGATTGACCAACCATCAAGAGGGTCAGGGCTTGGCATGTATTAAGGCACCTTCAAACCAGACAAACTGAAGCTAAATCAAAGAAAGATCCTCCAGTGTTGTTGATCTGTGTGTGTACTCCATGTATGCACTGTATTCTCTGAACAATATGTAGTGTCATTATGTTGAAAAAGCAGAACCATAACTCCCAATGGTACATACTTTGTGGGTGCTCTGCAAATGATTATCAAGGACTAAAGAGGCAGCCAATGAATGTACAATTCATGCATTCAGGAACTAAAACAAATAAACATACTAAGAG

Function

symbol description
gatc Predicted to enable ATP binding activity and carbon-nitrogen ligase activity, with glutamine as amido-N-donor. Predicted to act upstream of or within regulation of translational fidelity and translation. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 42. Orthologous to human GATC (glutamyl-tRNA amidotransferase subunit C).

NR:

description
glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial

GO:

id name namespace
GO:0006450 regulation of translational fidelity biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K02435 gatC, GATC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606156.2 False 856 mRNA 0.47 6 31652136 31656299
XM_021606154.2 False 1259 mRNA 0.44 5 31654447 31656298
XM_021606155.2 True 1123 mRNA 0.44 6 31654447 31656299

Neighbor

gene id symbol gene type direction distance location
LOC118936268 ublp coding downstream 10585 31640221 ~ 31641551 (-)
ublp ublp coding downstream 16300 31634776 ~ 31635836 (-)
LOC110525743 LOC106584993 coding downstream 20939 31616647 ~ 31631197 (-)
ssh1a LOC106584991 coding downstream 44377 31545143 ~ 31607759 (-)
LOC110525740 LOC106584990 coding downstream 112346 31465833 ~ 31539790 (-)
LOC110525757 LOC106585001 coding upstream 79555 31735854 ~ 31758504 (-)
LOC110525759 LOC106585003 coding upstream 144670 31800969 ~ 31824346 (-)
LOC118964859 NA coding upstream 148541 31804840 ~ 31806652 (-)
LOC110525762 LOC106585005 coding upstream 172431 31828730 ~ 31857288 (-)
si:ch211-113d22.2 LOC106585007 coding upstream 203867 31860166 ~ 31864841 (-)
G496652 NA non-coding downstream 226970 31424921 ~ 31425166 (-)
G496650 NA non-coding downstream 228230 31423689 ~ 31423906 (-)
G496640 NA non-coding downstream 243021 31400634 ~ 31409115 (-)
G496624 NA non-coding downstream 281649 31370010 ~ 31370487 (-)
G496623 NA non-coding downstream 285377 31366522 ~ 31366759 (-)
G496771 NA non-coding upstream 3181 31659480 ~ 31659947 (-)
G496775 NA non-coding upstream 11734 31668033 ~ 31668357 (-)
G496776 NA non-coding upstream 12955 31669254 ~ 31669636 (-)
G496789 NA non-coding upstream 48365 31704664 ~ 31705045 (-)
G496801 NA non-coding upstream 102848 31759147 ~ 31759455 (-)
G495560 NA other downstream 1076563 30575118 ~ 30575573 (-)
G495554 NA other downstream 1102686 30545402 ~ 30549450 (-)
LOC110525714 LOC106585251 other downstream 1124590 30526034 ~ 30527686 (-)
G494542 NA other downstream 1976563 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 2148745 29502192 ~ 29520980 (-)
G496772 NA other upstream 5094 31661393 ~ 31661618 (-)
G496777 NA other upstream 14679 31670978 ~ 31671927 (-)
G496851 NA other upstream 187164 31843463 ~ 31892649 (-)
LOC110525784 LOC106585031 other upstream 1023743 32680037 ~ 32682899 (-)
G498484 rpl6 other upstream 1671208 33327507 ~ 33330504 (-)

Expression


Co-expression Network