LOC110526885 (LOC106584996)


Basic Information

Item Value
gene id LOC110526885
gene name LOC106584996
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31660233 ~ 31671928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110526885
ATGGGTGTTTCGGACAAGTGTGACGGGCAGGTGGAGAAGTGGGAGAAAGGGAGATTCACCAGGGAGCTGAAAGAAGATGAAGAAGACAGGAAGACTCTTCACAAGGAACCTGCCCTAAACCTGCACAGAAGAGGAGCTCCGAGACTTCTTCACAAAGCatgCTGGTCATATCTGGAAGTGACCACTAGCGGGCGCTATAATGATAGCATCCAAGTGTACGCTGCCGGGGCCGTTGAAGCTGCAGTCAGCTCTGAGCTGATCTATAAGCACTGGATGAACACACTTATGGGGTACTGCAGtccatttacatttgagtcaggATTCTGTCACAGACTGAAGGATTACATCACCACCAACCTGCAGTGGGTCAGACAGCAGATAGAGGAGCATCCACACTGTCCCTACTGGCACCAGGAGTGGTTGGTGTTGCTGCAGCTGAAAGGTCTGAAAGATGGCTACAATGATCAGCTGTCATTTCCCAGAGGCCCTTTCACTCTCAACCCCTTCGGCTTCCTACTTTTCCAGATGGGAGGAGGCCTGGTGGATCTTGAGGGGGACCTAAACAAATCTAGCCAATCACGGACACTGGGCTCTGACTCCTGCTCCGCCCTCATCAAGATATTGCCTGGCAACAAGGATCTGCTGGTGTCTCATGATATCTGGAACATTTACCAGGCCATGCTGCGCATCCTAAAGAAGTACCAGTTCGCCTACCGTGTCTCTCCTACAGACAGTGATCCGATCCCTGGCGGAACCCAGGCCTTCTCCTACCCAGGGTCCATTTTCTCTGGAGATGATTTCTACATCCTTAGCACCGGGCTAGTGATAGCtctgtgtaatatgtgtgtacaaagtatatgtgtgtgtgtagtatttattttttaaagatgtCCCTCCACAGGTTACCTTGGAGACAAGCATCGACAACAGTAACCCCGCCCTCTGGAAATTTGTTCAACCAACCGGAGCAGTGATGGAGTGGCTGAGGAACATCGTAGCCAATACGCTGGCTGCATCCGGCAAGGAGTGGGCAGAGATTTTCAGCAAACACAACAGGTATAATAACCAGTGGATGATAGTGGAATACAGGCATTTCACTCCGGGGATGACAGAGACCAAGGAGCAGCTGTTTACTGTACTGGAGCAGCTCCCTGGGCTGGTTGTTCACTCTGATAAAACCCAGGAGTTGCTGCAGAAAGGTTACTGATCCAGTTATAATATCCCgtactaTGAGGaggtgtttaatgccagtggctgTCGAGAACTGGTTAAACAGTTTGGTCCATGGTTCTCTCTGGACATGAACCCTCGAACCCAGATCTTCAGAAGGAACCAATCACACATCACAGACATGGACTCCATGGTCCGCCTCATGAGGTATAATAACTTTAAGAATGACCCGTTGTCTTGGTGTGAGGGCTGTGACCCGCCTGCTAATGGAGAGAACACCATCTCAGCCCGGTCCGACCTGAACCCGGCTAACGGAACGTATCCCTTCGGGGCGCTGAAGCAGAGACCACATGGAGGAACGGATATGAAGGTGACGTCCTACGGGCTGTGGCGTGAGTTTGACTTCCTGGCAGCGAGTGGACCCACTTGGGACCAGGTACCTGCCTTCCAGTGGAGTTCCTCCCCCTACTCAGACCTGATGCACATAGGACACCCTGACACCTGGGCGTTTGCACCTGTAAATGTCACCTGGTCTACCTAACCCTTCTGatctatccgctgccttTGACACTGAACCATCATATCCTCCTCTcaaccctctcagggctgggcgtctatACACattcttggattgcatcctacctggcaggccgctcctaccaggtgacgtggagaggatctgtgtctgcaccacgtactctcactactggtgttcCCCAGGGCTTGGTTCTAGGTTGAAaaccccgcttgtgccatcaaacccctgcaacttatccagaacactGCAGCGcacctggttttcaaccttcccaagttctctatTGTCACCCCAGTCCTTCgtacactccactggcttccactCAAAGCTCAAATCCACttcaagaccatggtgcttacctatggaacagcaagaggaactgcccctcccgaccttcaggctatgctcaaatcctacaccccaacctgagaACTCCATTCTGCCACCTCCCGTTCTAGCTCTGACTACTGATTTATTTACTTGAGAAAAAATGTACattctatgcctgtgatatgtgattgtcccacctagctatcttaagatgaatgcactaactgtaagtcgctctggataagagcgtctgctaactgACTAAAATTTAAATATACCCCTTATATTAAACCTACACGCAC
>TU563699
GGCTTGGTTCTAGGTTGAAaaccccgcttgtgccatcaaacccctgcaacttatccagaacactGCAGCGcacctggttttcaaccttcccaagttctctatTGTCACCCCAGTCCTTCgtacactccactggcttccactCAAAGCTCAAATCCACttcaagaccatggtgcttacctatggaacagcaagaggaactgcccctcccgaccttcaggctatgctcaaatcctacaccccaacctgagaACTCCATTCTGCCACCTCCCGTTCTAGCTCTGACTACTGATTTATTTACTTGAGAAAAAATGTACattctatgcctgtgatatgtgattgtcccacctagctatcttaagatgaatgcactaactgtaagtcgctctggataagagcgtctgctaactgACTAAAATTTAAATATACCCCTTATATTAAACCTACACGCACAGACCCCTCCGTGTCAGAGAATAAACTAAGGGGTGATGGGTTTCATTTCAGAAGTGAAATGATTACaaaagtaatgtaatgtattagGTATACAGTACAACAGTAAGCTCAGGGTTAGCATGTATATTTACTGCTCTGTTGTGTGAACAATCTTGAGATAAGGAAGTGGGTTTTAACTgggttttaatgttttattttttatgttttgctCGTACTGGCTGTCATTGAATGTGATGTGAGACGGGAAAACTTTAAATGGGGCTGGAGTTCCACAAATGACAATATAGAGGTAGGAAATTGTACTGGGAAAAAA

Function

NR:

description
reverse transcriptase-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110526885 False 2340 mRNA 0.42 13 31660233 31671615
TU563699 True 763 lncRNA 0.42 1 31671166 31671928

Neighbor

gene id symbol gene type direction distance location
LOC110525750 NA coding upstream 47 31656338 ~ 31660186 (+)
LOC110525744 LOC105025588 coding upstream 5781 31644703 ~ 31654452 (+)
LOC110525738 ficd coding upstream 231651 31407004 ~ 31428582 (+)
LOC110525733 LOC106584983 coding upstream 354647 31215076 ~ 31305586 (+)
LOC110525731 LOC106584982 coding upstream 510046 31099067 ~ 31150187 (+)
zgc:158398 LOC106585000 coding downstream 3723 31675338 ~ 31683982 (+)
LOC110525752 LOC106584997 coding downstream 14322 31685937 ~ 31710430 (+)
LOC110525754 NA coding downstream 46136 31717751 ~ 31721352 (+)
LOC110525755 LOC106584999 coding downstream 52158 31723773 ~ 31733962 (+)
LOC110525758 NA coding downstream 82177 31753662 ~ 31767929 (+)
G496171 ublp non-coding upstream 18689 31634596 ~ 31641544 (+)
G496154 NA non-coding upstream 47028 31612988 ~ 31613205 (+)
G496152 NA non-coding upstream 48367 31611627 ~ 31611866 (+)
G496150 NA non-coding upstream 49718 31610243 ~ 31610515 (+)
G496140 NA non-coding upstream 63297 31596719 ~ 31596936 (+)
G496195 NA non-coding downstream 12536 31684151 ~ 31685333 (+)
G496192 NA non-coding downstream 40425 31712040 ~ 31712674 (+)
G496223 NA non-coding downstream 41655 31713270 ~ 31713512 (+)
G496224 NA non-coding downstream 42192 31713807 ~ 31714049 (+)
G496228 NA non-coding downstream 44957 31716572 ~ 31716874 (+)
G495920 LOC106584987 other upstream 347496 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 649629 31006547 ~ 31022524 (+)
G495132 NA other upstream 927343 30732352 ~ 30732890 (+)
G495076 LOC106585256 other upstream 1083477 30576105 ~ 30576756 (+)
4ebp2 LOC106585258 other upstream 1136850 30517976 ~ 30523383 (+)
polk polk other downstream 1256303 32926258 ~ 32936958 (+)
LOC110525799 LOC106585046 other downstream 1474852 33135282 ~ 33165186 (+)
c6h22orf39 cssa24h22orf39 other downstream 1646022 33317578 ~ 33320353 (+)
LOC110525816 LOC106585060 other downstream 1790020 33447246 ~ 33465055 (+)
G499111 NA other downstream 2479525 34151140 ~ 34151737 (+)

Expression


Co-expression Network