LOC110525764 (LOC106585006)


Basic Information

Item Value
gene id LOC110525764
gene name LOC106585006
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31866928 ~ 31903950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979898.1
CTGGCAGTCAGCTGATCACTGCTCTGGCATTCAGAGTTGAAgcggaggatggagagagagagaggctgagggagaagAGGCTACTGATGCTACAGTAATCTGTGATCTAACAGAGAGTAAGAAACCAACAGCGTCATCTCAGCTCTGTCAGCCTCTTGTCACGGTTTGTTCCGGGATCAACAATGCAGAAGAGCAGTCTGGGAAACGAAAGCAAAAGGAGGAAgtgaagagagaaacaagagatgCCAAAAAATCAACATCCtttcaaaaagagagagagagaacacacggaTCAGCtccaagacacacagagagagagagagagagagagaaagagagagagagatacaagtaAACAGACTCTGTGGtgagtcactcctcctctcttctactctcctctGGTGCGTTGTTGCTTATGCACAGAGGAGCAGCAGAACTAAGAGAGGAGTTCAATCTAGAGCCAGAGGAGGAGAACCAGACTGTGTGGGAGTAACAGAACCGAGAGTGGAACTGTAGAACCTGTAAGGGACCAGACCCTTACAACCAGGAGTATCATCAGACCCAGTGGGGTGCAACCAGACCCAGGGGGTTGTATACTGTATAGAGGAGCTGGTGTGTCTCTGTAGAGATGTCCTGGGGGTCtttgctgtctccagtccagtGGGCCAAATGGACTTGGTCAGCTGTGcgggggggaggggaggatgagggggaggagggagcgcCCGGAACCAATGATGGAGAAAAttcggACTCAGAAGGGAACTTTGAGACCCCAGAGGCGGAGTCTCCTGGTCTGCTGAATGACCTGACCCAGCTGGATAACTCTGCCCACACAGTCCTCACCAGAGATGTCGGACAGCTGACGCCCCGCCTCGTCCTGGACAGAAACTCCAATCAGGATGTTTATCCCACGTCCCTACAGGAAGTCCAAGATGCCCTAAACAACCTCAATAGCTCCTCCCCTCTGAGTGGAGCAGGTTTAGACCAGAACCTGAACCTGAGGTTGATCTCAAGACCTGGAGAAGGAGATGGTCTCTCCCCGTCCCCTCTGCCCCAGCCCCGCGCCCTACGCCCTGCCTCGCTCCCTGTCCACAACTTCCCTGACCCCGCAGAGGTTGATGACATTTCTCCTATCACCTATGACCCCAACGGCAACATGAACTCTGACCCCAAAAGCCTGACCCCTGAACTGGACAGACCGgactcagacagacagtcacctaGGATGAGCACGGACATCACGAACTCCTGTAAAGTGAAGAAGCTGGACAACCAGACTCCGTTACAGAACACCAGTGGAGAGGACAACGACCATCGCAAAGGTCATGCTACAGATGAGGAGAAGCTAGCCAGCACAACAGGACTCGGAGCAGATGGAGACCACAACGAGCTGAATGTGTCATCCAGACCAGAGGAGTCAGACTGCTGTTCTATGTATGAGGACCCCTGCCAGCTGAAGAACGCCAAGCTGGGAGGAAGTAACACGCAGAAGAAGACAGGAAGTGAGGTTCTAGACGCCATTTGCATCAGCGAGGAGGAGAAAATGGCTGTTCTCACCCTTATCAGAGAGGAGATCATCACTAAGGAGACGGAGGCCAGTGACTGGATGAGAAAGTATGAGGACAGCAGACAGGAAGTCATGGAGATGAGGAAAATTGTGGCAGAGTATGAGAAGACCATCGCCCAGATGATTGAGGACGAACAGCGCAACACCCTGAGCGCCCAGAAGTCTTTGCAGGCTGTAACCATGGAGAAGGAGTTGGCGCTAGCGGACCTGAACTCGGTAGAGCGCTCGCTGTCTGACATGTTCCGCCGCTATGAGAACATGAAGAGCACCCTGGACGGCTTCAAGAAGAATGAGGAGGTGCTGAAGAAGTGTGCTCAGGAGTATCTGGCCAGAGTCAAGCAGGAGGAGCAGAGATACCAGACGCTCAAACTCCACGCCGAGGAGAAACTAGACAAGGCTAATCAGGACATAGCCCAGGTACGCAGCAAGGCCAGCTCTGAGAGTGTTGCTCTGACCGCCAGCCTGAGGAAGGAGCAGATGAGGGTGGACTCTCTGGAGAGAGCCCTGCAGCAGAAGGCCGAGGAAATCGAGGAGCTCACCAAGATCTGTGACGAGCTCATCGCCAAGATGGGCAGAACAGACTGAGACAGATTCCATACGTCCAAATCATTCAATCTTGATCCACCGAGAAATCCCTGCCTACAACCTATGGCATACTCTGCCCTGTGCATGCATCCAGCCAATGAGCAGTTCTGTTTTCCCTTGGGGCGTCTGCCTCTAATGCTGCTGTACTGGTCCGATGTCATATGATAACCCATTTTCTCTTGAGTGGTGTACCCTatggagaatagggtgtcatttgagccAGAGATTGTTACATGTGGACTGTTTTTGTTTTGGTCATTTTCGCCATGCAAGACCAAATCCCTTACTCCCTCCATCTGTCGCTCTGTCCTGTAACTAATATAATACAATGTGCTGTCTAGGCATTGCATAGATTTGGGCTCATTTACCTGACGATAACAGTTTGTGGAGCACTTATTAATAGATTGTGTATATAAACACCCTGGCTgagatgtactgtacatatttatTCTGAACACTAGGAGACTAGGGTGGGACCAGGTAGACGCGCTCTAGGACagttagaggtcaggggtgagCTGTGTTTGACCCTTCTGTATGACTACACTATTACAGGGAGGGGGGGGATATGGGCATAGGGTTTAGGATGCACTGCTATTGATAGGGGTCGTGTGGGGCGTTGTCCTGGAAAGTATAAAGCTTTTCTCCTGTTTGTAATGAGGCCTTGTGTTAGCAGTGGAGGAGgggctgtaggtctactgtataGTCTGCTCTGTGTGGTCTTGGACAGGTTTAGATCACCTCCAGCATACCTGCACAGGGGAGGATTTCTCGCTGTCCTAAACTCCACCTGGTTAGTGTTTGTCTCAGGCCAGTGTGTTGGAGCAGAGAGTAGAATACTCGGTTACTCAATCTGGAAATGGTGAAATTAATACAAAGACTATCTATTTTGTATATGTTCAAGCATACTGAAAACTGGAAGTGTTTGAATGACTGTGGCTGTTATTTTTTAGTTCagaatttttttaaatcctcagaaTATCCTACTCATGTTCCCCTCTGGCCACTGACATGCACAGCACCTGTAGTGTCCAGGTGTGAAACATTATGACATGGCGGTAGAGGGAACTGTTCCAGGGTTACTTGAGCTCCCATTGACCCCGggccaatgtagtgcactatatagggaatagggtgccctttgggacacGCCCAGTGTGTTTCACTGCAGCACCTATTTAGTGGCATAGAAAGATAACGTTTCTCTTATTCACTGCTTAACTGTTCCCAGCTGAACTGGTTGTGTTAAATGCTCGTCACCCCTGTGGAGAGTCACACCGCCTCACAGTACTTGTTCCCTCTCCGCCATACTGCTCTGTGGACGACCATAGTTATACAAGatgcattataaactgggtggttccagccctgaatgctgattcgTTGACAGCCTTCTCTATCATGCACATTTTTGCGCCATTCTGCAGTTGCGTTTCCTCCAGCGTCATTGACGGTTTCGTTAAACATTGTTTTTTTAAAACTGTCACCAATCTCTTTTTTTGAATTGTCATTATTTGTGAAGTGGTAATAAGAAAAGTACAGCTATACTGACTATGTTGACTAATACGGTATATGCAGTGTGTCCTGAGTAAACAAGATTGCAGTAATAAAGGAGTGTGTTCTCATGG
>XM_036979899.1
TGCAAGGAATCTGGTCTGTGCAGGAGGGACCACTCgatcgaaagagagagagagaagagaggagaggaggggttagaggaagcaatagaaggagagagagggagagggctggcagacatacagagagagaggcagggactggCAGAATAGTTGACATGTGATCAGGACTCCTGAGCAGCCAGACCATTCACCCTGGATACAACATCAGCAGcagcaagagagagtgagaaggagctagaaagagacagaaggagccagagagagagacagaaggagctggagagagagacagaaggagctagagagagacagaaggagctagagagagacagaaggagctagagagagaagcagaaggAGCTAGTTAGTCAGGGATGTGGTGTGTGAGATGAGAAGAGGCTATAGTGGTCATGCCCTCATCACTGGGATTCTACTATTTTCAGAGAGTGGGAATATGGAGAGAGTGCTCTAAAAGAGATACATACGCCTGTCGCTTGGAAtaagatacaacacacacacactacacacatacacacccagcGTTGCCATGGGGGGCTCCCTCAGTCAGCACAGGAAGAGCTCCTTCAGCTCCCCCAGAAAGAAGAGCAGCATttcggACTCAGAAGGGAACTTTGAGACCCCAGAGGCGGAGTCTCCTGGTCTGCTGAATGACCTGACCCAGCTGGATAACTCTGCCCACACAGTCCTCACCAGAGATGTCGGACAGCTGACGCCCCGCCTCGTCCTGGACAGAAACTCCAATCAGGATGTTTATCCCACGTCCCTACAGGAAGTCCAAGATGCCCTAAACAACCTCAATAGCTCCTCCCCTCTGAGTGGAGCAGGTTTAGACCAGAACCTGAACCTGAGGTTGATCTCAAGACCTGGAGAAGGAGATGGTCTCTCCCCGTCCCCTCTGCCCCAGCCCCGCGCCCTACGCCCTGCCTCGCTCCCTGTCCACAACTTCCCTGACCCCGCAGAGGTTGATGACATTTCTCCTATCACCTATGACCCCAACGGCAACATGAACTCTGACCCCAAAAGCCTGACCCCTGAACTGGACAGACCGgactcagacagacagtcacctaGGATGAGCACGGACATCACGAACTCCTGTAAAGTGAAGAAGCTGGACAACCAGACTCCGTTACAGAACACCAGTGGAGAGGACAACGACCATCGCAAAGGTCATGCTACAGATGAGGAGAAGCTAGCCAGCACAACAGGACTCGGAGCAGATGGAGACCACAACGAGCTGAATGTGTCATCCAGACCAGAGGAGTCAGACTGCTGTTCTATGTATGAGGACCCCTGCCAGCTGAAGAACGCCAAGCTGGGAGGAAGTAACACGCAGAAGAAGACAGGAAGTGAGGTTCTAGACGCCATTTGCATCAGCGAGGAGGAGAAAATGGCTGTTCTCACCCTTATCAGAGAGGAGATCATCACTAAGGAGACGGAGGCCAGTGACTGGATGAGAAAGTATGAGGACAGCAGACAGGAAGTCATGGAGATGAGGAAAATTGTGGCAGAGTATGAGAAGACCATCGCCCAGATGATTGAGGACGAACAGCGCAACACCCTGAGCGCCCAGAAGTCTTTGCAGGCTGTAACCATGGAGAAGGAGTTGGCGCTAGCGGACCTGAACTCGGTAGAGCGCTCGCTGTCTGACATGTTCCGCCGCTATGAGAACATGAAGAGCACCCTGGACGGCTTCAAGAAGAATGAGGAGGTGCTGAAGAAGTGTGCTCAGGAGTATCTGGCCAGAGTCAAGCAGGAGGAGCAGAGATACCAGACGCTCAAACTCCACGCCGAGGAGAAACTAGACAAGGCTAATCAGGACATAGCCCAGGTACGCAGCAAGGCCAGCTCTGAGAGTGTTGCTCTGACCGCCAGCCTGAGGAAGGAGCAGATGAGGGTGGACTCTCTGGAGAGAGCCCTGCAGCAGAAGGCCGAGGAAATCGAGGAGCTCACCAAGATCTGTGACGAGCTCATCGCCAAGATGGGCAGAACAGACTGAGACAGATTCCATACGTCCAAATCATTCAATCTTGATCCACCGAGAAATCCCTGCCTACAACCTATGGCATACTCTGCCCTGTGCATGCATCCAGCCAATGAGCAGTTCTGTTTTCCCTTGGGGCGTCTGCCTCTAATGCTGCTGTACTGGTCCGATGTCATATGATAACCCATTTTCTCTTGAGTGGTGTACCCTatggagaatagggtgtcatttgagccAGAGATTGTTACATGTGGACTGTTTTTGTTTTGGTCATTTTCGCCATGCAAGACCAAATCCCTTACTCCCTCCATCTGTCGCTCTGTCCTGTAACTAATATAATACAATGTGCTGTCTAGGCATTGCATAGATTTGGGCTCATTTACCTGACGATAACAGTTTGTGGAGCACTTATTAATAGATTGTGTATATAAACACCCTGGCTgagatgtactgtacatatttatTCTGAACACTAGGAGACTAGGGTGGGACCAGGTAGACGCGCTCTAGGACagttagaggtcaggggtgagCTGTGTTTGACCCTTCTGTATGACTACACTATTACAGGGAGGGGGGGGATATGGGCATAGGGTTTAGGATGCACTGCTATTGATAGGGGTCGTGTGGGGCGTTGTCCTGGAAAGTATAAAGCTTTTCTCCTGTTTGTAATGAGGCCTTGTGTTAGCAGTGGAGGAGgggctgtaggtctactgtataGTCTGCTCTGTGTGGTCTTGGACAGGTTTAGATCACCTCCAGCATACCTGCACAGGGGAGGATTTCTCGCTGTCCTAAACTCCACCTGGTTAGTGTTTGTCTCAGGCCAGTGTGTTGGAGCAGAGAGTAGAATACTCGGTTACTCAATCTGGAAATGGTGAAATTAATACAAAGACTATCTATTTTGTATATGTTCAAGCATACTGAAAACTGGAAGTGTTTGAATGACTGTGGCTGTTATTTTTTAGTTCagaatttttttaaatcctcagaaTATCCTACTCATGTTCCCCTCTGGCCACTGACATGCACAGCACCTGTAGTGTCCAGGTGTGAAACATTATGACATGGCGGTAGAGGGAACTGTTCCAGGGTTACTTGAGCTCCCATTGACCCCGggccaatgtagtgcactatatagggaatagggtgccctttgggacacGCCCAGTGTGTTTCACTGCAGCACCTATTTAGTGGCATAGAAAGATAACGTTTCTCTTATTCACTGCTTAACTGTTCCCAGCTGAACTGGTTGTGTTAAATGCTCGTCACCCCTGTGGAGAGTCACACCGCCTCACAGTACTTGTTCCCTCTCCGCCATACTGCTCTGTGGACGACCATAGTTATACAAGatgcattataaactgggtggttccagccctgaatgctgattcgTTGACAGCCTTCTCTATCATGCACATTTTTGCGCCATTCTGCAGTTGCGTTTCCTCCAGCGTCATTGACGGTTTCGTTAAACATTGTTTTTTTAAAACTGTCACCAATCTCTTTTTTTGAATTGTCATTATTTGTGAAGTGGTAATAAGAAAAGTACAGCTATACTGACTATGTTGACTAATACGGTATATGCAGTGTGTCCTGAGTAAACAAGATTGCAGTAATAAAGGAGTGTGTTCTCATGG

Function

NR:

description
transforming acidic coiled-coil-containing protein 1-like

GO: NA

KEGG:

id description
K14283 TACC3, maskin; transforming acidic coiled-coil-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979898.1 False 3783 mRNA 0.50 13 31866928 31882270
XM_036979899.1 True 3648 mRNA 0.50 13 31866928 31903950

Neighbor

gene id symbol gene type direction distance location
si:ch211-113d22.2 LOC106585007 coding downstream 2087 31860166 ~ 31864841 (-)
LOC110525762 LOC106585005 coding downstream 9640 31828730 ~ 31857288 (-)
LOC110525759 LOC106585003 coding downstream 42582 31800969 ~ 31824346 (-)
LOC118964859 NA coding downstream 60276 31804840 ~ 31806652 (-)
LOC110525757 LOC106585001 coding downstream 108424 31735854 ~ 31758504 (-)
srrd srrd coding upstream 40599 31944549 ~ 31947393 (-)
LOC110525767 LOC106584919 coding upstream 69882 31973832 ~ 31984689 (-)
LOC110517556 dnajb5 coding upstream 117791 32021741 ~ 32033670 (-)
epg5 epg5 coding upstream 145237 32049187 ~ 32071847 (-)
LOC110525023 NA coding upstream 170173 32074123 ~ 32080766 (-)
G496801 NA non-coding downstream 107473 31759147 ~ 31759455 (-)
G496789 NA non-coding downstream 161883 31704664 ~ 31705045 (-)
G496776 NA non-coding downstream 197292 31669254 ~ 31669636 (-)
G496775 NA non-coding downstream 198571 31668033 ~ 31668357 (-)
G496771 NA non-coding downstream 206981 31659480 ~ 31659947 (-)
G496919 NA non-coding upstream 90508 31994458 ~ 31994683 (-)
G496920 NA non-coding upstream 91326 31995276 ~ 31995499 (-)
G496932 NA non-coding upstream 119978 32023928 ~ 32024730 (-)
G496950 NA non-coding upstream 178937 32082887 ~ 32083103 (-)
G496956 NA non-coding upstream 189498 32093448 ~ 32093762 (-)
G496777 NA other downstream 195001 31670978 ~ 31671927 (-)
G496772 NA other downstream 205310 31661393 ~ 31661618 (-)
G495560 NA other downstream 1291355 30575118 ~ 30575573 (-)
G495554 NA other downstream 1317478 30545402 ~ 30549450 (-)
LOC110525714 LOC106585251 other downstream 1339382 30526034 ~ 30527686 (-)
LOC110525784 LOC106585031 other upstream 776092 32680037 ~ 32682899 (-)
G498484 rpl6 other upstream 1423557 33327507 ~ 33330504 (-)
LOC110525812 LOC103397138 other upstream 1428700 33332650 ~ 33336818 (-)
G498960 NA other upstream 2136409 34040359 ~ 34041174 (-)
G501142 NA other upstream 3861416 35765366 ~ 35767929 (-)

Expression


Co-expression Network