srrd (srrd)


Basic Information

Item Value
gene id srrd
gene name srrd
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31944549 ~ 31947393 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606187.2
AACAGTCCCCCCTGTGTTGCCAGAAATACTAGCTACTAACTTTTTGTTTCATTCATTTTCCCTACGATTACACAATTAGTGACAGTATCATTACCATAAATTCATGAGTCTAATACCTGTGTTGGTTAGGTGAGCTGTTGTGTGGATGTAGATAAGCGAACTATTCCAGATGCCGAACAGCGGTGAGGAGTGGCAGGTGGCCCGGCGACGGAAGGGAGCAGGCCGCAGAGGGAAGATTCCTCACACGGCCTGTCATGAACCTGGACACGCCGACGCTGTGGACACAGATAGGACCAAACAAAGGATCACAGAAACCATGGCTGAACTGAGGTGTGCAGACTTCTGGTTTGAGTGGAGAGATCGACTGACGGCTGTGGCTAAGGTAGACTCCCCAGAGGTTGGAGGGGACCCAGCAGCAGGCTCTGACCCAGGACCTGAGGGTGGGGACCGGGCCCGGGAGGCCCCTAGCGGCccactggagtgtgtgtgttatggtctgGGCTCCTTCTCTTGCTGTGTGACAGCTCGTTACCAACTAGCTATGCTGCTATTGATTCTGGAGTCACTAcagATCCCTATGGAGTGGTGCAGTGTGTACGACCCTGTGTTTTCCTCAGGGGAGATGGAGGTACTGAGACAGCTTGGCCTCAACGTGCTGACTGAGAACGAGGAGGGGAAGCGAGCAGTGTCGAGGCCAACTCTTTTCTACCTGATGCATTGTGGGAAGGCTCTGTACAACAACCTGCTGTGGAAGAACTGGAGTAGAGATGCACTGCCTCTACTGACTATCATAGGAAACAGCTTTGCAGGCAtacaggacagGATGATTCAGAGAGAACTCCAGAGAGACTACAGCTACATAGCACACgctgtgtgtgtgtgtgaggagtggCCCCTTCCATGCCCGTCCCGACTCCTGGACATCTTCAATGACACTGCCCTCATCACCTTCAAGCCCAGCAGCCTCTGCAAACTGCCACAATCCGCCTGGGGGGAAGCACCAGAGCCCCAATACCAACACTGCCCCGATCTGGAGATCATACAGAGGCCCACAGagatgagaggagtggaggatgAAGGAATCACTGTGGTCTCTGTGGTTCCCAGTGAAATGAGAGGATAACAaggatttttttcccccttgtAATCCTTTGGTGGGACATTTTCTTTTTGGGGTAAATGTATTTTCAGGGTGGAAAAACACGTTAAGCTTCAACTTAAACtagatataaagtatgtagaaaagtcAATGAAcatctatatttttttattaatataatctttgagaactaacaatcaccaaaataaaagctagacagtgAGAATTGAAAATTCCAAAAACAATTGAATTTATCAGTATTCCTTTTGTTATTATGTTTGAACAAAAGAACACATCATTATCCATGGTgaaatgcatagaattgcaggaaactagctttaaaactgcaacattttctcagcTCCATGGCAGAATATATAGAAtcacaggaaattagctttaaaactgcaacattttctctcagctccatggcagAATATATAGAatcgcaggaaattagctttaaaactgcaacattttctctcagctccatggcagAATATATAGAatcgcaggaaattagctttaaaacggcCAAAAACATTCTCCGCTCCATGGAGAAATTtgttgaattgcaggaaattggcttaTTTTTTGATACAGCGCCAAGATAGGGTCCTCTAAAATGTAGCCACGCCGACGGTCATCTGGGCTCATTACTACGGCAAACCACGCCCACCCCTAAGCCcctttttgatccagaaaaaaaccctGGATAGGATGGTGGATACTGGACGTATGCCAAGTCGGATTCACTTCCACAGTCGGAAAATCTGGCAGAAGTGTGTGAGTGCTGtggacctgtgtgtgtttgttgataTGTGGAATGTATGTATGTTATAAAATTTGGAAGAagaataaaatgttaaaaaaagaA

Function

symbol description
srrd Predicted to be involved in microtubule-based process. Predicted to be active in cytoplasm and nucleus. Orthologous to human SRRD (SRR1 domain containing).

NR:

description
SRR1-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606187.2 True 1976 mRNA 0.46 7 31944549 31947393

Neighbor

gene id symbol gene type direction distance location
LOC110525764 LOC106585006 coding downstream 40599 31866928 ~ 31903950 (-)
si:ch211-113d22.2 LOC106585007 coding downstream 79708 31860166 ~ 31864841 (-)
LOC110525762 LOC106585005 coding downstream 87261 31828730 ~ 31857288 (-)
LOC110525759 LOC106585003 coding downstream 120203 31800969 ~ 31824346 (-)
LOC118964859 NA coding downstream 137897 31804840 ~ 31806652 (-)
LOC110525767 LOC106584919 coding upstream 26439 31973832 ~ 31984689 (-)
LOC110517556 dnajb5 coding upstream 74348 32021741 ~ 32033670 (-)
epg5 epg5 coding upstream 101794 32049187 ~ 32071847 (-)
LOC110525023 NA coding upstream 126730 32074123 ~ 32080766 (-)
slc14a2 LOC106585019 coding upstream 312953 32260346 ~ 32274147 (-)
G496801 NA non-coding downstream 185094 31759147 ~ 31759455 (-)
G496789 NA non-coding downstream 239504 31704664 ~ 31705045 (-)
G496776 NA non-coding downstream 274913 31669254 ~ 31669636 (-)
G496775 NA non-coding downstream 276192 31668033 ~ 31668357 (-)
G496771 NA non-coding downstream 284602 31659480 ~ 31659947 (-)
G496919 NA non-coding upstream 47065 31994458 ~ 31994683 (-)
G496920 NA non-coding upstream 47883 31995276 ~ 31995499 (-)
G496932 NA non-coding upstream 76535 32023928 ~ 32024730 (-)
G496950 NA non-coding upstream 135494 32082887 ~ 32083103 (-)
G496956 NA non-coding upstream 146055 32093448 ~ 32093762 (-)
G496851 NA other downstream 51900 31843463 ~ 31892649 (-)
G496777 NA other downstream 272622 31670978 ~ 31671927 (-)
G496772 NA other downstream 282931 31661393 ~ 31661618 (-)
G495560 NA other downstream 1368976 30575118 ~ 30575573 (-)
G495554 NA other downstream 1395099 30545402 ~ 30549450 (-)
LOC110525784 LOC106585031 other upstream 732649 32680037 ~ 32682899 (-)
G498484 rpl6 other upstream 1380114 33327507 ~ 33330504 (-)
LOC110525812 LOC103397138 other upstream 1385257 33332650 ~ 33336818 (-)
G498960 NA other upstream 2092966 34040359 ~ 34041174 (-)
G501142 NA other upstream 3817973 35765366 ~ 35767929 (-)

Expression


Co-expression Network