LOC110525767 (LOC106584919)


Basic Information

Item Value
gene id LOC110525767
gene name LOC106584919
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31973832 ~ 31984689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979904.1
TTCACCCTGCCGCAGTCTGCATCCAGCTTAGAGATGAGCTACCCACTGGACTACCTCTACGGCCACGGATCCTATCGCAGGACACCACAGGGACACTCTGCCCGGCCCGCcgcttccctctcctcctccggcTACCACTCCCAGCCATGGACGACCTCCCAGCGCCACCGCCCGGCCTACAGCCAGGCAGCCTCTGCCGACAGCTTGGAAATCTTTAATGGCGACATGACTCGGAGGAACGAGAAGGAGATTCTGCAGACACTCAACGACCGGTTCGCCGGTTACATCGACAAGGTGCGGAACCTCGAGCTGATTAACTCGAATCTGGAGCAGGAAGCGGCTGCGCTGCGACAGAGCCAGACCGGGCGCGCTACCGTTGGAGAGCACTATCAGCGTGAGCTGGGGGACCTGAGGGTTATGGTCCAGCAGTTGACCGGGGAGAAGGCACGCACACTCTTGGAGCATGACCACCTTGAAGAGGACATCCAGCATGTGCGGACCAGGCTCGAGGACGAGGCACGCAGCCGGGAGGAGCTGGAAGCCGCAGCACGCGTCATGAACAAGTATGTGAATGAGTCTGGGCTTGCACGGCTGGAGCTGGACAAGAAGCTGTTCGCGCTGCAGGAAGAAGCCGCGTTCCTGAAGAAGAACCAcgaggatgaggtggccgagatGCTAGCACAGATCCAGGGTACACAGGTGAGGTTCGAGGCTCGAGACACGATCAAGGCGGACGTGACGAGCGCGCTGCGGGAGATCCGTGCTCAGCTGGATGGCCACGCGACCAAGAGCGCAATGCAGGCAGAGGGATGGTTCAAAGTGCGTATGGAACGGTTGGCGGATGCAGCTCACTCTAATACGGATGCAATCCGCGGTGCCCAAGAGGAGATAGCCGAGTATAGACGGCAGCTGCAGAGCCGCACCATCGAACTGGAGACCCTCAAAGGAACCAAGGAGTCTTTGGAGAGACAACGCATGGATAGTGAGGACAGACACCATGGGGATATCCACTCCCTACAGgagaccATCCACCAGCTGGACGGTGAGCTGAAGAGTACTAAGTGGGAGATGGCCAGTCAGCTGAGAGAATATCAGGAGCTGCTGAATGTCAAGATGGCTCTGGATATAGAGATAGCTGCCTACAGGAAGTTgctggaaggggaggagactcgGTTCCTATCTGGGCCAAGCCTGTTCTCCTACTCCTCCGTTCACCTTAAGCTTAAGGGGGAGGAGCTCTCAGACACAGTCATACTGGAGGAACAGACGGATGAGACACAGGTCACTGAGGtgacagaggaaggagaggaagagaagggcgaagagaatgaagaggaagtaaaggatgaggaagaggatgagaccAAAGCTGaggtaggagagggggaaggatctgaggataagggaggagaggaggaagagggtgttaaggaggaagaggaaggatctgaggataagggaggagaggaggaagagggtgatAAGGAGGAAGGGGAAGGATCTGAGgataagggaggggaggaggaagagggtgataaggaggaagaggaaggatcTGAGGATAAGGGGGAAGAGGAGTCaggtgaggagaaagagaagTCTAAGTCACCTGAGGAGGCTGCTTCTCCATCTAAGTCTCCCACCAAAACCCCCCAGCCCAAATCTCCCGCCGTCAAATCCCCTGAATCCAAATCACCCCCAGCCAAATCTCCCCTCCCCAAATCACCCGCCAAGTCTCCTGCCCCCAAATCTCCCACGGAGAAATCTCCCCAGCTCAAATCTCTGGCTGTGAAATCACCATCTAAATCTCCCCCTAGCAAATCCCCAGAGTCTAAGTCCCCTCCTCCCAAGTCCCCCCTCCCCAAGTCTCCTGAACCCAAGTCCCCCATCCAGGAGAAGGCCAAGCCCCCTGCAGAAGACAAACCAGccaaggaggagaagaaggagaaggaacaACCCCAGCCTGTAAAAGAGGAGAAGAAACAGGAGCCAGAACccaaggagaaagagaagagtggGAGCCAGCCTAAAGAGAAGGCTGAGGAGAAGACAGACAAACCAGATCCCAAGAAGGAGAGCAAGCCAGAGGAGACCCCAACACCTGCCCCTCCTGCCGCCGCCTTGGCCAAGCCTGCAGAGGAGAAGCCCGCCCCCGCCAAGGAGAGCCCCACCCCTGCTAAGAAGGAAGATGAGAAACAGGCCCCATCCAAAACAGACGACAAACCTCAGGCAGAGTTGAAGCCTGCCCCCAAAGAATCACCAGAGAAaacagagagcaagaaagagaagaAACCAGAGCCCaaagaggaggtgaaggaggacAAGCAGGAGGCCTCTAAAGGGTCTGACAGTAAAGAGGTTAAGGATACGAAGGTGGAAGGGAAGGCAGAGAAGGACGAAAAGTCCTCCAGCACTGAGGTCAAAGAGAAAGCCATGAAGTGAATCACTAACGCGTTGTGTatgagccgagagagagagacagagagagagagagacagag
>XM_021606185.2
TTCACCCTGCCGCAGTCTGCATCCAGCTTAGAGATGAGCTACCCACTGGACTACCTCTACGGCCACGGATCCTATCGCAGGACACCACAGGGACACTCTGCCCGGCCCGCcgcttccctctcctcctccggcTACCACTCCCAGCCATGGACGACCTCCCAGCGCCACCGCCCGGCCTACAGCCAGGCAGCCTCTGCCGACAGCTTGGAAATCTTTAATGGCGACATGACTCGGAGGAACGAGAAGGAGATTCTGCAGACACTCAACGACCGGTTCGCCGGTTACATCGACAAGGTGCGGAACCTCGAGCTGATTAACTCGAATCTGGAGCAGGAAGCGGCTGCGCTGCGACAGAGCCAGACCGGGCGCGCTACCGTTGGAGAGCACTATCAGCGTGAGCTGGGGGACCTGAGGGTTATGGTCCAGCAGTTGACCGGGGAGAAGGCACGCACACTCTTGGAGCATGACCACCTTGAAGAGGACATCCAGCATGTGCGGACCAGGCTCGAGGACGAGGCACGCAGCCGGGAGGAGCTGGAAGCCGCAGCACGCGTCATGAACAAGTATGTGAATGAGTCTGGGCTTGCACGGCTGGAGCTGGACAAGAAGCTGTTCGCGCTGCAGGAAGAAGCCGCGTTCCTGAAGAAGAACCAcgaggatgaggtggccgagatGCTAGCACAGATCCAGGGTACACAGGTGAGGTTCGAGGCTCGAGACACGATCAAGGCGGACGTGACGAGCGCGCTGCGGGAGATCCGTGCTCAGCTGGATGGCCACGCGACCAAGAGCGCAATGCAGGCAGAGGGATGGTTCAAAGTGCGTATGGAACGGTTGGCGGATGCAGCTCACTCTAATACGGATGCAATCCGCGGTGCCCAAGAGGAGATAGCCGAGTATAGACGGCAGCTGCAGAGCCGCACCATCGAACTGGAGACCCTCAAAGGAACCAAGGAGTCTTTGGAGAGACAACGCATGGATAGTGAGGACAGACACCATGGGGATATCCACTCCCTACAGgagaccATCCACCAGCTGGACGGTGAGCTGAAGAGTACTAAGTGGGAGATGGCCAGTCAGCTGAGAGAATATCAGGAGCTGCTGAATGTCAAGATGGCTCTGGATATAGAGATAGCTGCCTACAGGAAGTTgctggaaggggaggagactcgGTTCCTATCTGGGCCAAGCCTGTTCTCCTACTCCTCCGTTCACCTTAAGCTTAAGGGGGAGGAGCTCTCAGACACAGTCATACTGGAGGAACAGACGGATGAGACACAGGTCACTGAGGtgacagaggaaggagaggaagagaagggcgaagagaatgaagaggaagtaaaggatgaggaagaggatgagaccAAAGCTGaggtaggagagggggaaggatctgaggataagggaggagaggaggaagagggtgttaaggaggaagaggaaggatctgaggataagggaggagaggaggaagagggtgatAAGGAGGAAGGGGAAGGATCTGAGgataagggaggggaggaggaagagggtgataaggaggaagaggaaggatcTGAGGATAAGGGGGAAGAGGAGTCaggtgaggagaaagagaagTCTAAGTCACCTGAGGAGGCTGCTTCTCCATCTAAGTCTCCCACCAAAACCCCCCAGCCCAAATCTCCCGCCGTCAAATCCCCTGAATCCAAATCACCCCCAGCCAAATCTCCCCTCCCCAAATCACCCGCCAAGTCTCCTGCCCCCAAATCTCCCACGGAGAAATCTCCCCAGCTCAAATCTCTGGCTGTGAAATCACCATCTAAATCTCCCCCTAGCAAATCCCCAGAGTCTAAGTCCCCTCCTCCCAAGTCCCCCCTCCCCAAGTCTCCTGAACCCAAGTCCCCCATCCAGGAGAAGGCCAAGCCCCCTGCAGAAGACAAACCAGccaaggaggagaagaaggagaaggaacaACCCCAGCCTGTAAAAGAGGAGAAGAAACAGGAGCCAGAACccaaggagaaagagaagagtggGAGCCAGCCTAAAGAGAAGGCTGAGGAGAAGACAGACAAACCAGATCCCAAGAAGGAGAGCAAGCCAGAGGAGACCCCAACACCTGCCCCTCCTGCCGCCGCCTTGGCCAAGCCTGCAGAGGAGAAGCCCGCCCCCGCCAAGGAGAGCCCCACCCCTGCTAAGAAGGAAGATGAGAAACAGGCCCCATCCAAAACAGACGACAAACCTCAGGCAGAGTTGAAGCCTGCCCCCAAAGAATCACCAGAGAAaacagagagcaagaaagagaagaAACCAGAGCCCaaagaggaggtgaaggaggacAAGCAGGAGGCCTCTAAAGGGTCTGACAGTAAAGAGGTTAAGGATACGAAGGTGGAAGGGAAGGCAGAGAAGGACGAAAAGTCCTCCAGCACTGAGGTCAAAGAGAAAGCCATGAAGTGAATCACTAACGCGTTGTGTatgagccgagagagagagacagagagagagagagagagaca

Function

NR:

description
neurofilament medium polypeptide-like

GO: NA

KEGG:

id description
K04574 NEFH, NF-H; neurofilament heavy polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979904.1 False 2500 mRNA 0.56 5 31973832 31984689
XM_021606185.2 True 2501 mRNA 0.56 5 31973835 31984689

Neighbor

gene id symbol gene type direction distance location
srrd srrd coding downstream 26439 31944549 ~ 31947393 (-)
LOC110525764 LOC106585006 coding downstream 69882 31866928 ~ 31903950 (-)
si:ch211-113d22.2 LOC106585007 coding downstream 108991 31860166 ~ 31864841 (-)
LOC110525762 LOC106585005 coding downstream 116544 31828730 ~ 31857288 (-)
LOC110525759 LOC106585003 coding downstream 149486 31800969 ~ 31824346 (-)
LOC110517556 dnajb5 coding upstream 37052 32021741 ~ 32033670 (-)
epg5 epg5 coding upstream 64498 32049187 ~ 32071847 (-)
LOC110525023 NA coding upstream 89434 32074123 ~ 32080766 (-)
slc14a2 LOC106585019 coding upstream 275657 32260346 ~ 32274147 (-)
setbp1 setbp1 coding upstream 335806 32320495 ~ 32378525 (-)
G496801 NA non-coding downstream 214377 31759147 ~ 31759455 (-)
G496789 NA non-coding downstream 268787 31704664 ~ 31705045 (-)
G496776 NA non-coding downstream 304196 31669254 ~ 31669636 (-)
G496775 NA non-coding downstream 305475 31668033 ~ 31668357 (-)
G496771 NA non-coding downstream 313885 31659480 ~ 31659947 (-)
G496919 NA non-coding upstream 9769 31994458 ~ 31994683 (-)
G496920 NA non-coding upstream 10587 31995276 ~ 31995499 (-)
G496932 NA non-coding upstream 39239 32023928 ~ 32024730 (-)
G496950 NA non-coding upstream 98198 32082887 ~ 32083103 (-)
G496956 NA non-coding upstream 108759 32093448 ~ 32093762 (-)
G496851 NA other downstream 81183 31843463 ~ 31892649 (-)
G496777 NA other downstream 301905 31670978 ~ 31671927 (-)
G496772 NA other downstream 312214 31661393 ~ 31661618 (-)
G495560 NA other downstream 1398259 30575118 ~ 30575573 (-)
G495554 NA other downstream 1424382 30545402 ~ 30549450 (-)
LOC110525784 LOC106585031 other upstream 695353 32680037 ~ 32682899 (-)
G498484 rpl6 other upstream 1342818 33327507 ~ 33330504 (-)
LOC110525812 LOC103397138 other upstream 1347961 33332650 ~ 33336818 (-)
G498960 NA other upstream 2055670 34040359 ~ 34041174 (-)
G501142 NA other upstream 3780677 35765366 ~ 35767929 (-)

Expression


Co-expression Network