LOC110525771 (LOC106585012)


Basic Information

Item Value
gene id LOC110525771
gene name LOC106585012
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32003116 ~ 32013034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979905.1
TGTGATTGGGTTCTCGAATGTAGTGTCTCGTTATGCACCAATTTGAGAGCTCTAGTCCATAACAGTAGCGATTGGACCTGAAGAGATCGGTGTGAAGTTACTTTGCCAGTGACGCTTCACAAATAGCGAGCTACTTTTTATTTATACATACTATTTCAGTAGTACCATGGCCTCGGGAGGAGAATCCAAAAATGATGACCTTTCCACTGCGATTCTGAAGCAGAAGACCAGACCAAACAGATTGATTGTCGATGAATCCATAAATGAGGACAAcagtgtggtctctctctctcagGCAAAGATGGATGAGCTGCAGCTGTTCCGTGGCGACACAGTGCTGATGAAGGGGAAGAAGCGCAGGGAGTCTGTGTGTATTGTCCTGTCTGACGACACCTGCTCTGATGAGAAGGTCCGCATGAACCGTGTGGTCCGCAACAATCTCCGTGTCCGTCTGGGGGATGTCATCAGTATCCAGCCGTGTCCTGATGTAAAGTATGGGAAGAGGATTCATGTTCTGCCTATTGATGACACAGTCGAAGGGATCACTGGCAACCTGTTTGAGGTCTATCTCAAACCCTATTTCCTAGAGGCCTACAGGCCCATCCGCAAGGGTGATATCTTCCTGGTTCGTGGGGGTATGCGTGCGGTGGAGTTCAAGGTGGTAGAGACCGACCCCAACCCCTACTGCATCGTCGCCCCAGATACAGTCATCCACTGCGAGGGAGAGCCTATCAGGAGAGAGgATGAGGAGGAGTCCCTGAATGAGGTGGGCTATGATGATATCGGAGGAGTGAGGAAGCAGCTAGCTCAGATCAAGGAGATGGTTGAGCTGCCTCTCAGACACCCTGCACTGTTCAAGGCTATAGGAGTCAAGCCCCCCCGTGGTATCCTGCTATACGGACCTCCCGGTACTGGAAAGACCCTGATTGCCAGAGCTGTTGCTAACGAGACCGGAGCCTTCTTCTTCCTCATCAACGGTCCTGAGATTATGAGTAAGCTGGCTGGGGAGAGTGAGAGCAACCTGAGGAAGGCCTTTGAGGAGGCTGAGAAGAACTCTCCTGCCATCATCTTCATTGATGAACTGGACGCTATCGCTCCcaagagagagaagACTCATGGAGAAGTGGAGAGGCGTATCGTGTCTCAGCTGCTGACCCTGATGGACGGGCTGAAGCAGAGAGCTCATGTCATTGTCATGGCAGCCACCAACAGACCAAACAGCATAGATGCTGCACTTAGAAGATTTGggcgTTTTGACAAGGAGGTGGACATTGGTATCCCTGATGCTACAGGCAGACTGGAGATCCTGCAGATCCACACCAAGAACATGAAACTGAATGACGATGTTGACCTTGAGCAGGTGGCTAATGAGACCCACGGCCACGTGGGTGCTGATCTGGCTGCCCTGTGCTCAGAGGCTGCTCTCCAGGCCATCAGGAAGAAGATGGACCTCATCGACCTGGAGGACGAGACCATCGATGCGGAGGTCATGAACTCCCTTGCAGTTACCATGGACGACTTTAGGTGGGCTCTAAGCCAGAGTAACCCATCAGCTCTGAGGGAGACGGTGGTGGAGGTTCCTAACATCACCTGGGGGGACATCGGAGGACTGGAAGACGTTAAGCGGGAGCTGCAGGAGCTGGTGCAGTACCCAGTGGAGCACCCAGATAAGTTCCTGAAGTTCGGTATGACTCCTTCAAAGGGAGTGTTGTTCTACGGGCCTCCGGGTTGCGGTAAGACCCTGCTGGCCAAGGCCATTGCCAATGAGTGCCAGGCCAACTTCATCTCCATTAAAGGACCTGAGCTTCTCACCATGTGGTTTGGAGAGTCAGAGGCTAATGTCAGGGAGATCTTTGACAAGGCTCGCCAGGCAGCCCCATGTGTGTTGTTCTTTGACGAGCTGGACTCCATAGCGAAGGCCCGTGGAGGTAATGTGGGAGACGGTGGCGGTGCGGCCGACCGTGTCATCAACCAGATCCTGACTGAGATGGACGGCATGTCCAGCAAGAAGAACGTCTTCATCATTGGAGCCACCAATCGCCCTGACATCATCGACCCTGCCATCCTCCGACCTGGCCGTCTGGACCAGCTCATATACATCCCTTTGCCTGATGAGAAGAGCAGGATCAATATTCTCAAGGCTAACCTCCGGAAGAGCCCCATTAGcaagGATGTTGATCTGGACTTCCTGGCTAAGATGACCAATGGGTTCTCAGGTGCTGACCTTACAGAGATCTGCCAGCGGGCCTGTAAGCTGGCTATCAGAGAGTGCATTGAGAACGAGATTcgccgagagagggagaggcagaccaACCCCTCTGCTATGGAGGTGGAAGAAGACGACCCTGTACCTGAGATCAGGAAGGACCACTTTGAGGAGGCCATGCGATTCGCCCGCCGTTCCGTCAGTGACAATGACATCCGCAAATATGAGATGTTTGCCCAGACACTGCAGCAGAGCCGAGGATTTGGCAGCTTCAGGTTCCCCTCCAATGCTGCAGGGGGCAGCGGTCCCAGCCAGGGTACTGGGGGCACTGGTGGGGGGCCAGTGTTTAACGAGGATAATGATGATGACCTGTACGGATAGATGGACGGCTGGATGGATGGTGCCACATGGTGGCCATTTCTGTTATCATACCTGTACAAACACTCAAACCCAATTGACCATTTTTAGGACTATGTGCTTCTTTCATGTGTTTCTTTTTGTATGATTCCTCTCTGGTGGAGAAAACAACATGTAGCTGCCTGGTTTGATCTGGAAGGGGGGCAGTGGATAGAGGTGATTggttggtgggggtgggggggggcttgAGTGGCCCCATTCTGAGTTTATTACAATCCCATGTGACTGGTTTTAGTTGTGGGATTCTATGCGAGACTATAAAAGGGGATTAAAGAATAGCTAATGACTTAATTTTTTTATGAGTAGTAGCAGATAATGTATGACAAGTTTGAAAATGTTGAAAATAAAATCTCACGAAATGACAA

Function

NR:

description
PREDICTED: transitional endoplasmic reticulum ATPase

GO:

id name namespace
GO:2000058 regulation of ubiquitin-dependent protein catabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979905.1 True 2988 mRNA 0.52 17 32003116 32013034

Neighbor

gene id symbol gene type direction distance location
fancg fancg coding upstream 457 31995567 ~ 32002659 (+)
LOC110525768 LOC106585010 coding upstream 26710 31955764 ~ 31976406 (+)
tfip11 tfip11 coding upstream 47950 31947139 ~ 31955166 (+)
si:ch211-166a6.5 LOC106585008 coding upstream 58580 31928078 ~ 31944536 (+)
LOC110525758 NA coding upstream 235187 31753662 ~ 31767929 (+)
LOC118965021 NA coding downstream 1495 32014529 ~ 32017379 (+)
rgmb LOC106585015 coding downstream 175396 32188430 ~ 32201364 (+)
erap2 LOC106585017 coding downstream 198327 32211361 ~ 32224832 (+)
lnpep LOC106585016 coding downstream 219054 32232088 ~ 32250568 (+)
cdk7 cdk7 coding downstream 390377 32403411 ~ 32409712 (+)
G496354 NA non-coding upstream 10924 31991987 ~ 31992192 (+)
G496309 NA non-coding upstream 57471 31944578 ~ 31945645 (+)
G496198 LOC106585005 non-coding upstream 170247 31828011 ~ 31832869 (+)
G496264 NA non-coding upstream 175421 31825706 ~ 31827695 (+)
G496360 NA non-coding downstream 5951 32018985 ~ 32021387 (+)
G496344 epg5 non-coding downstream 40183 32053217 ~ 32054884 (+)
G496374 NA non-coding downstream 46028 32059062 ~ 32060119 (+)
G496396 NA non-coding downstream 80895 32093929 ~ 32094214 (+)
G496399 NA non-coding downstream 83725 32096759 ~ 32096984 (+)
G495920 LOC106584987 other upstream 690379 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 992512 31006547 ~ 31022524 (+)
G495132 NA other upstream 1270226 30732352 ~ 30732890 (+)
G495076 LOC106585256 other upstream 1426360 30576105 ~ 30576756 (+)
4ebp2 LOC106585258 other upstream 1479733 30517976 ~ 30523383 (+)
polk polk other downstream 914884 32926258 ~ 32936958 (+)
LOC110525799 LOC106585046 other downstream 1133433 33135282 ~ 33165186 (+)
c6h22orf39 cssa24h22orf39 other downstream 1304603 33317578 ~ 33320353 (+)
LOC110525816 LOC106585060 other downstream 1448601 33447246 ~ 33465055 (+)
G499111 NA other downstream 2138106 34151140 ~ 34151737 (+)

Expression


Co-expression Network