rgmb (LOC106585015)


Basic Information

Item Value
gene id rgmb
gene name LOC106585015
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32188430 ~ 32201364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606201.2
TGACAGGGCGGGCGGGTCCTGCTCTCTCAGAGGCGGGTTTTCCGCAAAAGGGTTGGTTGATTTGCTATCGatctgaggaagagaggagaggggaggattcTTAGGTGAGgcctggagagaaagagagaaagagagagggagagggggcgagagagagagagcgagagagagcgagagagcggagCCGAGATTTATTGCTACAACAAGACTAAACTCAACCAGGACGGAATAGCGCTGCTAGAGACAGGAAATATGATGCAGGGAGCGAAGAAGGAGTGAAAGTGTTTGGTGGAAGGACTGCTATTTTTCAATCGCTACTGTtttccccctttcctcctctccttttctttccatTCCTCCTCCCTGACCGATCGCATTCCGCGTAGAATCTGCACTTTAATGCCCCTGCGCACCCGAGGAGTGGAAGGAGAGAAGAGCAAGGaagaagagagcgagggagaacagagcgagggagaaggagagcagaGGCCTGACTTTAACGGAAACCCCGCCGCCGcacctcacccctctcccccGTGGCTGcctgtcccctctcccctcctggcCCTGCATGGACGGGGATGGGGAGAGCCGGATGTTGTTACCGCGGGGCTGAGCGCCTCGCATCCTCGCCTTCCCTGCGACCGCTGCTGCTGCTGATCGTCGCTCTCTGTTACGGGGCGCACAGAGgtCATTGCCAGGTGGCCACCCCTCAGTGTCGTATCCACAAGTGCACCACAGACTTTGTGTCCCTGACGTCTCACCTGACCCCAGCGCTGGATGGCTTTGCCGTAGAGTTCTGTAAGGCTCTGAGGTCCTACAGCGCCTGCACCCAGAGGACAGCCAAGTCCTGTAGGGGCAACCTGGTCTTCCACTCTGCTGTCCTGGGCATCTCAGACCTCATGACCCAGAGAAACTGCTCCCGTGACGGGCCCACCTCCTCCACACACCCCGAGATACAATCAGAGCCCTGCAACTACCACAGCCGCACCCAGCACACTCACCCACACCCTCACTCTCACACGCACACTACCACGCGGCCGGGTTACCTGTTCTGCGGGCTGTTTGGGGATCCCCATCTGCGGACGTTTAAGGACAGCTTCCAGACCTGCAAGGTGGAAGGGGCGTGGCCGCTGATTGATAACGACTTCTTGTCTGTGCAGGTGACCAACGTTCCTGTGGTAACGGGATCCAGCGCCACAGCGACCAATAAGATCACCATCATATTCAAGCCCTTTGAGGAGTGTACAGACCAGCGTGTTTACCAGGCAGTAACAGATGACCTGCCCGCTGCCTTCGTAGACGGTACCGTGAGCAGCGGGGCCCCCAACCACAACGTTAACGGGAATAACGGTGACTCTACCGGTAAGGTACGGGCGCTGTGGATCTCGGAGCGTAGCCCCGGTCACCACGTGGAGCTGCACGCCGGCTACATCGGCGTGACGGTTATCGTACGACAGCTGGGGCGCTACCTGACCCTGGCGGTGCGCATCCCGGAGGAGATGGCCCATGCCTACGACGCTACGCAGGACCTGCAGCTCTGCCTCAACGGATGTCCCACCTCGGAACGCATCGACCGGGGAGGTCACCTGCCACtgcctctccctctaccccctccagcCCTGGGCTTACATCTCCAGCAGCCACACGGCCAGGGCAAGGGCCAGCCCTCCCACACGGCTCCCTACAGCGCCCCCCAGTGGTTCAGTGTGGAGGGTGCACGGGCACGCTGCAGGGAGCAGCTGGAGTTACAGGATATTTATTTCCACTCATGTGTGTTTGACCTCATGACCACCGGGGACGCTAACTTCACGGCAGCAGCGTTCAGCGCTCTGAAGGACATGGAGAGTCTCCACCCCCACCGGGAACGCTGGAGGATCTTCCCACAAAGCTCTGCCGACACCTCCCAGCCTATCACATGGCTCCTACTGCTCACTCTCTTTGCGCTCGGCTCTGCACTGGTatagcgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatatagAGCCCCTAGCTGAGCTGTAGGATAAAGTTCCCTCTATgcagatctaaggtcagttttgtgttttccCCTAACGGTTATGATTGAGGAGGGTAAACtaagctgatcctggatctgtgtcTAAGAGAAACTTCTAACCAGAGCCCCTCTGGAGATTTCACTTTTTATTCTTCTTGGTGAAAAGAGAATAGTTGACTGAACACCCTAAGGCATATTACTGCCATAAAGGTGGCACAGCTGGCATCTGAACAGATTCCACGACACTCCTGTGTTCTTCCCATCTCTGCTGTGTGGGACCTAGCAGGCTTCCTGGAGATGATGACCTGTCTATATGTGAGGATTAGCAACCAACACTCCaacctgtgtgtgtatattgtagaaACACACTCCAGACTGTAAATAGTGTGTGTGACGTATCCTGGAACGCTGGATGGCGTTGTTTTGGTTTTTATTTTTGCGTGATTTTGTtgtgatagttttttttttatacctcatAGACAGAGGACGTTGTTTTAAGAGAAGCACTTTATTTAGATTTTTTGCTAAATCCACACCAgtgttccccctctcccctttcaaccccacccccccactctcttccccttccaccccaccccccccactctcttcccctttcaaccccaccccccactctcttcccctttcaaccccaccccc

Function

NR:

description
RGM domain family member B-like

GO: NA

KEGG:

id description
K06847 RGMB; RGM domain family member B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606201.2 True 2726 mRNA 0.56 3 32188430 32201364

Neighbor

gene id symbol gene type direction distance location
LOC118965021 NA coding upstream 171051 32014529 ~ 32017379 (+)
LOC110525771 LOC106585012 coding upstream 175396 32003116 ~ 32013034 (+)
fancg fancg coding upstream 185771 31995567 ~ 32002659 (+)
LOC110525768 LOC106585010 coding upstream 212024 31955764 ~ 31976406 (+)
tfip11 tfip11 coding upstream 233264 31947139 ~ 31955166 (+)
erap2 LOC106585017 coding downstream 9997 32211361 ~ 32224832 (+)
lnpep LOC106585016 coding downstream 30724 32232088 ~ 32250568 (+)
cdk7 cdk7 coding downstream 202047 32403411 ~ 32409712 (+)
serinc5 LOC106585022 coding downstream 213021 32414385 ~ 32469172 (+)
mtx3 mtx3 coding downstream 284500 32485864 ~ 32507844 (+)
G496420 NA non-coding upstream 53099 32132298 ~ 32135331 (+)
G496403 NA non-coding upstream 86834 32101363 ~ 32101596 (+)
G496400 NA non-coding upstream 90464 32097692 ~ 32097966 (+)
G496399 NA non-coding upstream 91446 32096759 ~ 32096984 (+)
G496396 NA non-coding upstream 94216 32093929 ~ 32094214 (+)
G496460 NA non-coding downstream 5701 32207065 ~ 32207269 (+)
G496429 NA non-coding downstream 25723 32227087 ~ 32228124 (+)
G496470 NA non-coding downstream 60991 32262355 ~ 32263061 (+)
G496486 NA non-coding downstream 84712 32286076 ~ 32286354 (+)
G496500 NA non-coding downstream 104462 32305826 ~ 32306305 (+)
G495920 LOC106584987 other upstream 875693 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 1177826 31006547 ~ 31022524 (+)
G495132 NA other upstream 1455540 30732352 ~ 30732890 (+)
G495076 LOC106585256 other upstream 1611674 30576105 ~ 30576756 (+)
4ebp2 LOC106585258 other upstream 1665047 30517976 ~ 30523383 (+)
polk polk other downstream 726554 32926258 ~ 32936958 (+)
LOC110525799 LOC106585046 other downstream 945103 33135282 ~ 33165186 (+)
c6h22orf39 cssa24h22orf39 other downstream 1116273 33317578 ~ 33320353 (+)
LOC110525816 LOC106585060 other downstream 1260271 33447246 ~ 33465055 (+)
G499111 NA other downstream 1949776 34151140 ~ 34151737 (+)

Expression


Co-expression Network