LOC110526888 (LOC106585027)


Basic Information

Item Value
gene id LOC110526888
gene name LOC106585027
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32508680 ~ 32520900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979929.1
ATGCGCTTACTACGCTCTACAACGAACGAACACTGGCGCGCGTTTGGGCCGGACAGTTCAGCTTCGGAACACAGGGACAGCTCCCAGGTGCTGAAATTGTCGAGCATCAAACCGAACCGTCTTCTACAGTAAAACATTTATATAAAAACAGAAAAAGCCACTGACTGACACGAAGCCTTCGACGCAGATGGCTGCCACTCAGGGGACCACTCAAGGGAAGGAGGGCGGGGACCAGAACTTTGACTACATGTTCAAACTGCTGATCATTGGCAACAGCAGCGTGGGTAAAACCTCCTTCTTGTTCCGCTACGCTGACGACGCCTTCACCTCAGCCTTCGTCAGCACCGTGGGCATTGACTTCAAAGTCAAGACCGTCTACAAGAACGACAAGAGGATCAAACTGCAGATCTGGgACACAGCGGGACAGGAGCGGTACCGGACAATCACCACTGCATACTACCGGGGAGCCATGGGCTTCATCCTTATGTATGACATCACCAACGAGGAGTCCTTCCATTGTGTGCAGGACTGgtCGACCCAGATTAAGACCTATTCTTGGGACAACGCCCAGGTGGTGCTGGCTGGGAACAAGTGtgacatggaggaggagagggtggtggCTGCAGACAGCGGGAGACAGCTGGCAGAACAACTCGGTTTTGAGTTCTTTGAAACGAGTGCCAAGGACAACATCAATGTCAAGCAGACCTTTGAACGCCTCGTTGACATCATCTGTGACAGGATGTCCGAGAGCCTGGACACTGATCCTGCCGTTACCACGGGAACACCTAGCGCCAAACTGACAGACAGCGCCCCGCCGCTCCAGCAGTCCGCTTGTAACTGTTAGTGGCTCCTCCCGCTTCCTGTGTTTCGAAGATACCCAGTCCCTTAGATATAggttgcatcctaaatggcacccttttccgtacataatgcactacttttgacgagggcccatagggctctggtcaaaggttgTGTACTTTATAggaaaaagggtgccatttgtgactcaACGGTAGTCTTAAAGTAGGGGTGCACAActaaggtcctggatggctgcaGCAAAGGCCGATTTTCCTCCTTGCCTTTTAATCAGAGATTGACTTGTATAAATACTGTAGGTGCACTCTCTGGCCAATCAGTGACAGTAGTGCATCAGTTAAGTGCCAGGATGGAAGGAAACTCAGCAGGATTGCGGACTGGAGTTGTGCACCCCTGTCTTGTAGTATTCTgatgtgtcatctgaccacttttatCATCGTACATCAGCCAGGGCTGCAGACTGTTTCTGTTCTCTTGACAACTCCTTATGGAATTGTCAAAcatggagttggcaagagcactGATCTGTGACCAGGCACGCAATCTGTCCCTCTATAGCTGTGTTGAGGTACAGATCTTTACACCTTTACCTAGAAACACAGAGGGTCTGAATATGTCTGATGAGTATGTCTGTGTCGGCCTTACAGGATGGCTAATGATATGACACTACAAACATCCATTATCCTCTTTAGCTTACCTTACAACATTAAAAATGATGCTTGTAAAGGCTGTTAGAATTCAACGTGTTGTCCATGCACTGCACAGTAGCCTTCCAACTGGCTTCAAAGACTTGTAATCGATTCAAATTCTATTAGGAGAACCCAGAGCTTTGTCACTGTTTTTATTGTCCATCCTAAAACTTGCAGGGGATAAAGTTATAATCAGTGCATTCATTTATTTAGCCATCTATTTATGCATTTATTATGTTTGTGTTGCATATTGTCTTCTGCCGAAGCCAAAAGCTATTCCGTGTACTGTAGACAAACTGGTAGATGGTAGCTGATTTctgtttgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaggaaAAGTGAATTGAGTGTGGCAGTGTGATAGATTTCAATCATCTACCTTGGGATTAAAAAACAAATGTGGCCTTTTAGTATTTCCAACATGGCCTCTTCTCCTTTATGGTCACCTGCCACATTGATTTCATACTTGATAAATATCCTACATTGTGTCTGtgagtactgtatactgtacacgTGCATTTGTATTAGTAGTCCTGATATACCATCTGATGAGTGTGTCCACATTTCTGCAAAACTGAATAGATCCTCTTTTTCTAGTCTTATTAAGAAATTTGACAAGTGTGCTGTCAAATAACCAATAACCGAAGTTATGTTGTTCTACGCAGACCATTACAGTTATCTTTACCCAAACTACAAACCGACCCTTCCCTCATATCCACTTCCCgaagagaaagaaaataaaaaatgaccACAGCCAAGATATGATATGTTATGACAGGTGGATACTGAAGCCATGATAGAGTCTGTCTGACTGGATAAACATCAATATCCTCCGAAACAGTATTTTTAGGGAGAATGGTGTCCATATTTCATATACCTAAGAAAGTGCACCTTTTCCACATCCTTGAACCACGTTGTTATTGTCTCCATCCTTGGCTGAAGCAAATTGTCCTTTACATATAGGATGTCGTGACAGTCCTGTACCTCCCAGTGAAGATAATCTACCATATAATAGGGGAATAAGGACATAAAACATTTGATAACTAATTGTGCCAACAAAGAAAACTGTCTGTAGTTTGTTTTACATCGTGTCTTTGCATAGAAAATGGAAGGTTCAAAAAAGAAGAGTAGCATGAAGACATTGAATTATCTATATTTATATATCTAAGGGTGTATGTTATCTATGTTATAGATATAGAATTAAGTGCATCTTCATAGCTTTGGCTGTGTGATGCAATGGGCCAACAAGTGCAATATTTTAGGAATTTATTTCTGTACATAGTCCTTCTAGTACCGTATACCTGCAGTTGAGTGACTGGTCTGATGTTGGTGTTGTATTGTATGGCACTGCAAGCAtcacactaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctttatCTGGGATTTGCAGTGCGGTGAAGTAGTGTAATGGGTGTTTATTACTTATTGTATGCGTGTACCTTTTCTACGGATGTATTCATGCACTATATACTGTTCCTGCTAGCTATCTGTTGGTGAACTCGTACTATACGTGAAAATGCAGTATTGTGGAAGATAGAGAAATTAGGGTATGCCATATGCTGTACTGATATTAAGTCTATGTTATAAAAAAGGGAAATACTACTCCAACAGGATGTTTGTTGTCTGTGTGAGATTATTATTTACCTGTACATGAATAGTAGCCATTACCCTGCTGAGATTGAAACCTCCAACATCTCTACATTCAAATTCCCTGTCATCTACTTCCTCATCTGTGATTATGCATATTCATGACCTCCACTAttcagcccactgggcacagacgtcaattcaacgtctattccacgttgttTTGTACCTTCAAGTGCAAGCAATGTACAAACTATGTGTTTAAGATGATAGGAAATAAACTAATTGTATTCATgtca
>TU565121
tgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgctttatCTGGGATTTGCAGTGCGGTGAAGTAGTGTAATGGGTGTTTATTACTTATTGTATGCGTGTACCTTTTCTACGGATGTATTCATGCACTATATACTGTTCCTGCTAGCTATCTGTTGGTGAACTCGTACTATACGTGAAAATGCAGTATTGTGGAAGATAGAGAAATTAGGGTATGCCATATGCTGTACTGATATTAAGTCTATGTTATAAAAAAGGGAAATACTACTCCAACAGGATGTTTGTTGTCTGTGTGAGATTATTATTTACCTGTACATGAATAGTAGCCATTACCCTGCTGAGATTGAAACCTCCAACATCTCTACATTCAAATTCCCTGTCATCTACTTCCTCATCTGTGATTATGCATATTCATGACCTCCACTAttcagcccactgggcacagacgtcaattcaacgtctattccacgttgttTTGTACCTTCAAGTGCAAGCAATGTACAAACTATGTGTTTAAGATGATAGGAAATAAACTAATTGTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979929.1 False 3535 mRNA 0.43 5 32508680 32520900
TU565121 True 540 lncRNA 0.39 2 32508687 32516502

Neighbor

gene id symbol gene type direction distance location
thbs4a LOC106585023 coding downstream 25730 32469312 ~ 32482950 (-)
setbp1 setbp1 coding downstream 130155 32320495 ~ 32378525 (-)
slc14a2 LOC106585019 coding downstream 234533 32260346 ~ 32274147 (-)
LOC110525023 NA coding downstream 427914 32074123 ~ 32080766 (-)
epg5 epg5 coding downstream 436833 32049187 ~ 32071847 (-)
LOC110525784 LOC106585031 coding upstream 159137 32680037 ~ 32682899 (-)
LOC110525785 LOC106585030 coding upstream 169807 32690707 ~ 32730676 (-)
LOC110525787 LOC106585035 coding upstream 229765 32750665 ~ 32759951 (-)
LOC110525788 LOC106585037 coding upstream 363025 32883925 ~ 32924410 (-)
LOC110525792 LOC106585039 coding upstream 426134 32947034 ~ 32962214 (-)
G497428 NA non-coding downstream 97499 32410937 ~ 32411181 (-)
G497427 NA non-coding downstream 97785 32410590 ~ 32410895 (-)
G497116 NA non-coding downstream 118919 32389540 ~ 32389761 (-)
G497112 NA non-coding downstream 120208 32388216 ~ 32388472 (-)
G497075 NA non-coding downstream 181714 32326682 ~ 32326966 (-)
G497518 NA non-coding upstream 67168 32588068 ~ 32612518 (-)
G497573 LOC106585028 non-coding upstream 137342 32658242 ~ 32663253 (-)
G497663 NA non-coding upstream 304957 32825857 ~ 32826944 (-)
G497698 NA non-coding upstream 406409 32927309 ~ 32927532 (-)
G497699 NA non-coding upstream 406693 32927593 ~ 32930771 (-)
G496851 NA other downstream 616031 31843463 ~ 31892649 (-)
G496777 NA other downstream 836753 31670978 ~ 31671927 (-)
G496772 NA other downstream 847062 31661393 ~ 31661618 (-)
G495560 NA other downstream 1933107 30575118 ~ 30575573 (-)
G495554 NA other downstream 1959230 30545402 ~ 30549450 (-)
G498484 rpl6 other upstream 806607 33327507 ~ 33330504 (-)
LOC110525812 LOC103397138 other upstream 811750 33332650 ~ 33336818 (-)
G498960 NA other upstream 1519459 34040359 ~ 34041174 (-)
G501142 NA other upstream 3244466 35765366 ~ 35767929 (-)

Expression


Co-expression Network