LOC110525784 (LOC106585031)


Basic Information

Item Value
gene id LOC110525784
gene name LOC106585031
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32680037 ~ 32682899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606209.2
ACCACGAATCACGTGACCAGATAATTATTCAGCAACCCCCCGCCCCCTTCAGCAATCTCTAGGCTGACTGAAAGATAGATATGAAGGTTATATGCCTTTGCTAGCTGCGTTTGGTTCACCATTGTCTATAGTGCTTATTTTAACATGTAAAACGAGGTTCATTTTCAATGGGCACTGAATAGCTCAAATTGGTTGATGGAATTTGTCTGCTACCAGCATTTTGTCCGATTGCTATTCTTAGAAATCAACTCTGCAAACAAACGTCATGGTTTGACAGTATGGCCTGGGAAACTGACCTGAACGTTTATTTTGTTTTCGAATAATATAACCTACTTTCAGCTGACAACATCAAGCCGAAGGAACTGAGGATTGTTTTCACCCGGAAGAAGACCCGCGAGGACATGGGTGGCAAAGTCAGTAGCACAATGGCTGCAGTTGGACGGGTGGTACAGGCTGTGAAACCTCATGCTCCGCTAATGAAGTTTCCCAGCAGAGAGGGGGTCCCCAGGCTGAGTGTCCAAGAGACTCTTAAAACATTAGCAGTCGGCTCTCCAAGTTCACCTCCAGTTGTAGCACCGCCGCTGTTATCGAGACCCCCCAGACCTGTCACTCTACTCTCTGGAACCCCAGACAGTGTGGCCACAGTGAAGGAACTCCCCCAGAGATACCGCAGGAGGGCATTGGAAACAGACGAGATGGACTATATTCAGCGTGGTGGACCAGAGTGATAAGTCCTTACCTGTGGAAATCAGTTTGTGTTTTTGCCTAATTTTGTTCCCCAACAAGAGAGGACCTGCTGCCACACCTCAGACACagaataatactataataactgAAACTGTACAAATAAAGTATATTTTTAAAGATGTGA
>XM_021606208.2
TACCACGAATCACGTGACCAGATAATTATTCAGCAACCCCCCGCCCCCTTCAGCAATCTCTAGGCTGACTGAAAGATAGATATGAAGGTTATATGCCTTTGCTAGCTGCGTTTGGTTCACCATTGTCTATAGTGCTTATTTTAACATGTAAAACGAGGTTCATTTTCAATGGGCACTGAATAGCTCAAATTGGTTGATGGAATTTGTCTGCTACCAGCATTTTGTCCGATTGCTATTCTTAGAAATCAACTCTGCAAACAAACGTCATGGTTTGACAGTATGGCCTGGGAAACTGACCTGAACGTTTATTTTGTTTTCGAATAATATAACCTACTTTCAGCTGACAACATCAAGCCGAAGGAACTGAGGATTGTTTTCACCCGGAAGAAGACCCGCGAGGACATGGGTGGCAAAGTCAGTAGCACAATGGCTGCAGTTGGACGGGTGGTACAGGTACGCTTGTCAAACTTGGATATTTATCGCACTGCAACAACACTTGTAACTCAAGCTGTGAAACCTCATGCTCCGCTAATGAAGTTTCCCAGCAGAGAGGGGGTCCCCAGGCTGAGTGTCCAAGAGACTCTTAAAACATTAGCAGTCGGCTCTCCAAGTTCACCTCCAGTTGTAGCACCGCCGCTGTTATCGAGACCCCCCAGACCTGTCACTCTACTCTCTGGAACCCCAGACAGTGTGGCCACAGTGAAGGAACTCCCCCAGAGATACCGCAGGAGGGCATTGGAAACAGACGAGATGGACTATATTCAGCGTGGTGGACCAGAGTGATAAGTCCTTACCTGTGGAAATCAGTTTGTGTTTTTGCCTAATTTTGTTCCCCAACAAGAGAGGACCTGCTGCCACACCTCAGACACagaataatactataataactgAAACTGTACAAATAAAGTATATTTTTAAAGATGTGA
>TU565305
GCAATCTCTAGGCTGACTGAAAGATAGATATGAAGGTTATATGCCTTTGCTAGCTGCGTTTGGTTCACCATTGTCTATAGTGCTTATTTTAACATGTAAAACGAGGTTCATTTTCAATGGGCACTGAATAGCTCAAATTGGTTGATGGAATTTGTCTGCTACCAGCATTTTGTCCGATTGCTATTCTTAGAAATCAACTCTGCAAACAAACGTCATGGTTTGACAGTATGGCCTGGGAAACTGACCTGAACGTTTATTTTGTTTTCGAATAATATAACCTACTTTCAGCTGACAACATCAAGCCGAAGGAACTGAGGATTGTTTTCACCCGGAAGAAGACCCGCGAGGACATGGGTGGCAAAGTCAGTAGCACAATGGCTGCAGTTGGACGGGTGGTACAGGCTGTGAAACCTCATGCTCCGCTAATGAAGTTTCCCAGCAGAGAGGGGGTCCCCAGGCTGAGTGTCCAAGAGACTCTTAAAACATTAGCAGTCGGCTCTCCAAGTTCACCTCCAGTTGTAGCACCGCCGCTGTTATCGAGACCCCCCAGACCTGTCACTCTACTCTCTGGAACCCCAGACAGTGTGGCCACAGTGAAGGAACTCCCCCAGAGATACCGCAGGAGGGCATTGGAAACAGACGAGATGGACTATATTCAGCGTGGTGGACCAGAGTGATAAGTCCTTACCTGTGGAAATCAGTTTGTGTTTTTGCCTAATTTTGTTCCCCAACAAGAGAGGACCTGCTGCCACACCTCAGACACagaataatactataataactgAAACTGTACAAATAAAGTATATTTTTAAAGA

Function

NR:

description
28S ribosomal protein S36, mitochondrial-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606209.2 False 871 mRNA 0.46 5 32680037 32682898
XM_021606208.2 False 926 mRNA 0.45 5 32680037 32682899
TU565305 True 815 TUCP 0.45 5 32680042 32682847

Neighbor

gene id symbol gene type direction distance location
LOC110526888 LOC106585027 coding downstream 159137 32508680 ~ 32520900 (-)
thbs4a LOC106585023 coding downstream 197087 32469312 ~ 32482950 (-)
setbp1 setbp1 coding downstream 301512 32320495 ~ 32378525 (-)
slc14a2 LOC106585019 coding downstream 405890 32260346 ~ 32274147 (-)
LOC110525023 NA coding downstream 599271 32074123 ~ 32080766 (-)
LOC110525785 LOC106585030 coding upstream 7808 32690707 ~ 32730676 (-)
LOC110525787 LOC106585035 coding upstream 67766 32750665 ~ 32759951 (-)
LOC110525788 LOC106585037 coding upstream 201026 32883925 ~ 32924410 (-)
LOC110525792 LOC106585039 coding upstream 264135 32947034 ~ 32962214 (-)
LOC110525797 LOC106585042 coding upstream 390802 33073701 ~ 33076106 (-)
G497573 LOC106585028 non-coding downstream 16784 32658242 ~ 32663253 (-)
G497518 NA non-coding downstream 67519 32588068 ~ 32612518 (-)
G497428 NA non-coding downstream 268856 32410937 ~ 32411181 (-)
G497427 NA non-coding downstream 269142 32410590 ~ 32410895 (-)
G497663 NA non-coding upstream 142958 32825857 ~ 32826944 (-)
G497698 NA non-coding upstream 244410 32927309 ~ 32927532 (-)
G497699 NA non-coding upstream 244694 32927593 ~ 32930771 (-)
G497704 NA non-coding upstream 254985 32937884 ~ 32938314 (-)
G497707 NA non-coding upstream 259315 32942214 ~ 32942494 (-)
G496851 NA other downstream 787388 31843463 ~ 31892649 (-)
G496777 NA other downstream 1008110 31670978 ~ 31671927 (-)
G496772 NA other downstream 1018419 31661393 ~ 31661618 (-)
G495560 NA other downstream 2104464 30575118 ~ 30575573 (-)
G495554 NA other downstream 2130587 30545402 ~ 30549450 (-)
G498484 rpl6 other upstream 644608 33327507 ~ 33330504 (-)
LOC110525812 LOC103397138 other upstream 649751 33332650 ~ 33336818 (-)
G498960 NA other upstream 1357460 34040359 ~ 34041174 (-)
G501142 NA other upstream 3082467 35765366 ~ 35767929 (-)
hk2 LOC106585103 other upstream 3825157 36507843 ~ 36569143 (-)

Expression


Co-expression Network