LOC110525792 (LOC106585039)


Basic Information

Item Value
gene id LOC110525792
gene name LOC106585039
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 32947034 ~ 32962214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606224.2
ACCAATCTAATCCCGCATTGTTGTAAAATTAGCCAGTTTGAAACACAAACCTAGCGATTTGAAACTGTCAAGATCAACAAGTTGATAACACAAAACAAACGCAAGACGAAGGCAGTTCGATATACTCCAAAGCACCAAGATGTCCTCAGATGAAGGGGATCCGAGCAGTCCAGTTCTGCCAGGAGACTCAGATCAGGGCAGCTCGGTCTCCTCTGAGCTGCAGGATGAATATGAAGAACTTCTCCGCTACGCAGTGGTCACTCCTAAGTATGACCCGCAGCCCGCCGCTCAACTGCAGCTTCTGAGTGCCTCACAACTGTCTGCGGATGGACGGAGTTCCCGTGGAAATGATGACGCGAGGTCCCATCGCTCAGCAGgcTCAGTTTCTGAAGCTGAAGATGGGAGACGCTCTAGCAGGGGAGTGAGGTCAGCACGGGCCTCCCCTTTTATGGTGGAGCCCAGGGCACACTCACACACCTTTGAGGGTAATGAAGAGATGGCTGGCAGGTCATCTGTTGTCTCAGACGCTCACTCAGACAGACTGCCGACGCCGTCGGAGAGCTCCAGACACGGCAGTCCAGACCCCCTGGTCACCGTGGTGACAGAGATGTTTGTCTCTGACGAGAACCTGAACAAGATGGAGAACCTCCTGGACACCTGGAGCGACAAGCTCAAGGCCAACGTGCTGATGGAGCTGAGGAAGTGGAAGCTGGCCTTCATGGAGCAGCACAAGCTGgaggtgaggaaggagagggagaagcatgCTGCCTGTATAGCAGGCCTCACTGCAGAGATGGACAGCCTGAAGGAACTGCTCCACACCTACGAGACCTCCAACCAGAGGAAGGACGAGGTGATAGTGAACCTGAGCCAGGCtgtggacagacagagggagaggctggAGCTGATGAGGACCTTCACCCACTGGAGACTGCAGCACAGCGAAGCCAGGGAGCAGgcCCACAGTGCCCGGCTGGCAGAGCAGCACTACCGTCTGCAGCTGAAGAGGAAGGTGTGGGCAGGCTGGCACAACCTGGTCGAGGGGAGCTGGAAGGAGAAGGTGGAGAAGGCTTGCCGCGCCCGGGCAGAGGAGGTCTGTGTGCGCCTGTCAGCTGGCTATGAGGACAAGATGGCAGAGCACGTGGAAGCGCTGGATGCTGCCCAGGCTGAGATCCAGAGGCTGCACTCCGAGAGGGAGCGTTATGAGGAGTCCATGAAGAAGGCCTTTATGAGGGGCGTGTGTGCCCTCAACATGGAGGCTCTCAGCATGTTCCACACTGGGGAGGGACGAGCGGAGCACGACCTGCACGATGCTCCGCCCCCTCGGGATGATCCTGGCACCGGCTCATTGGCCCATCTCCAGCAAAGGCCTGCCTCCTCCACTCGGTTCAGCCCGGTCCACTTTGACCCCCCTGTACCACCGTCCCAGAGTGACGCAGAGGAGACAGTGGGTTCCAATGTCCCAGCCTCCAGAGTTGAGTTGATCCCCTCCACCACGGTGGTCCACAGCACCCTACCGCCAGGTGGCACTGCAAGCTCCCACAGACAAGTCAGTACACGGGTGATCACATCGGGTCAACAGAAAGCCTCCAAAACCGTGACCGCTCGCATCACGGCACGCGCCGATCTCCGCGCTCCCAGCTCCGTACGTGCTCCCAGCAACCTCCAGGTCATGGGTGTGGCTCCTCCAATGAGCTCTGTCATCGTGGAGCGCCATCACCCCGTCACACAGcTCACGGTGGGTCAGGCCACCGCAGCTAAGTTCCCCCGCTCCTCCTCTCAGCAGGGCCAGGGCCCCTACAGCAGCAAGAGTTCCTCCAGAACACACTCAGCCTACCACGTACACTCTATCAAAGTGGttgagtaaacacacacacactcaacaataTCACCTATGGTTATATGCAAATACAAGTAGTACTCCCGTACATGACTTGGTCATGGTGATACATGTGCACAAATGAATATTCCCAAATATTCTACACATacgtaaccacacacacacacacacacacacacacgttcactaCTATGAGAGAACTATGAAGGACCTGAACCATTTCTGTGAGAACTAAGTTTAGGATTACAGAAAATAATTTTTCAAATGCAATCAATAAACATGATAACACTCTGGAATGGAAGGTAGAATGGTGGAATGGATGGAACCGCCTTGTCTTTTCAGAGCATTTGGATAATGACTTTTTCACTAGTTTTACTTCTTATTGTGAATGactgtttttgtattttcttctgtttttttatttgttgtttttaAATGATGGAAAGTCAGTCTCTTGACTGTTGTGTGAAATCGCATATTTGAAATAATATTGCGTTGATGATGTGTTGAGAACAACACTTGTGGTCAAGTTTTCAGGACTGTATCAAGGCCATATGTTCATGTTTTGGTCAAAATCTGCACTATAAACTTTTACGGTAAATTCTTGAACATGAATAAAACATGAATTGCAAATA
>XM_021606223.2
ATATGTCTCTGCTGTCTTGAGTCTGTCCCGCCTCCATTCCAGTCTGCCAGGCCACTGCAACATATGGGGCTTAATGCTATTAAGCATGAGGTTTATGACCTCAAAGGCGTTTCTGTCTTCGTTTGTACAGGTGAACCTAGCTATGTGTCAGTAGTTTCCCAACTGACAGGCACAACAATGTCAACAGGCAGGTTCTCAGGGTGGTGGTATTCACCAAAGACATATACCTACTTCAGACAGATGTCCTCAGATGAAGGGGATCCGAGCAGTCCAGTTCTGCCAGGAGACTCAGATCAGGGCAGCTCGGTCTCCTCTGAGCTGCAGGATGAATATGAAGAACTTCTCCGCTACGCAGTGGTCACTCCTAAGTATGACCCGCAGCCCGCCGCTCAACTGCAGCTTCTGAGTGCCTCACAACTGTCTGCGGATGGACGGAGTTCCCGTGGAAATGATGACGCGAGGTCCCATCGCTCAGCAGgcTCAGTTTCTGAAGCTGAAGATGGGAGACGCTCTAGCAGGGGAGTGAGGTCAGCACGGGCCTCCCCTTTTATGGTGGAGCCCAGGGCACACTCACACACCTTTGAGGGTAATGAAGAGATGGCTGGCAGGTCATCTGTTGTCTCAGACGCTCACTCAGACAGACTGCCGACGCCGTCGGAGAGCTCCAGACACGGCAGTCCAGACCCCCTGGTCACCGTGGTGACAGAGATGTTTGTCTCTGACGAGAACCTGAACAAGATGGAGAACCTCCTGGACACCTGGAGCGACAAGCTCAAGGCCAACGTGCTGATGGAGCTGAGGAAGTGGAAGCTGGCCTTCATGGAGCAGCACAAGCTGgaggtgaggaaggagagggagaagcatgCTGCCTGTATAGCAGGCCTCACTGCAGAGATGGACAGCCTGAAGGAACTGCTCCACACCTACGAGACCTCCAACCAGAGGAAGGACGAGGTGATAGTGAACCTGAGCCAGGCtgtggacagacagagggagaggctggAGCTGATGAGGACCTTCACCCACTGGAGACTGCAGCACAGCGAAGCCAGGGAGCAGgcCCACAGTGCCCGGCTGGCAGAGCAGCACTACCGTCTGCAGCTGAAGAGGAAGGTGTGGGCAGGCTGGCACAACCTGGTCGAGGGGAGCTGGAAGGAGAAGGTGGAGAAGGCTTGCCGCGCCCGGGCAGAGGAGGTCTGTGTGCGCCTGTCAGCTGGCTATGAGGACAAGATGGCAGAGCACGTGGAAGCGCTGGATGCTGCCCAGGCTGAGATCCAGAGGCTGCACTCCGAGAGGGAGCGTTATGAGGAGTCCATGAAGAAGGCCTTTATGAGGGGCGTGTGTGCCCTCAACATGGAGGCTCTCAGCATGTTCCACACTGGGGAGGGACGAGCGGAGCACGACCTGCACGATGCTCCGCCCCCTCGGGATGATCCTGGCACCGGCTCATTGGCCCATCTCCAGCAAAGGCCTGCCTCCTCCACTCGGTTCAGCCCGGTCCACTTTGACCCCCCTGTACCACCGTCCCAGAGTGACGCAGAGGAGACAGTGGGTTCCAATGTCCCAGCCTCCAGAGTTGAGTTGATCCCCTCCACCACGGTGGTCCACAGCACCCTACCGCCAGGTGGCACTGCAAGCTCCCACAGACAAGTCAGTACACGGGTGATCACATCGGGTCAACAGAAAGCCTCCAAAACCGTGACCGCTCGCATCACGGCACGCGCCGATCTCCGCGCTCCCAGCTCCGTACGTGCTCCCAGCAACCTCCAGGTCATGGGTGTGGCTCCTCCAATGAGCTCTGTCATCGTGGAGCGCCATCACCCCGTCACACAGcTCACGGTGGGTCAGGCCACCGCAGCTAAGTTCCCCCGCTCCTCCTCTCAGCAGGGCCAGGGCCCCTACAGCAGCAAGAGTTCCTCCAGAACACACTCAGCCTACCACGTACACTCTATCAAAGTGGttgagtaaacacacacacactcaacaataTCACCTATGGTTATATGCAAATACAAGTAGTACTCCCGTACATGACTTGGTCATGGTGATACATGTGCACAAATGAATATTCCCAAATATTCTACACATacgtaaccacacacacacacacacacacacacacgttcactaCTATGAGAGAACTATGAAGGACCTGAACCATTTCTGTGAGAACTAAGTTTAGGATTACAGAAAATAATTTTTCAAATGCAATCAATAAACATGATAACACTCTGGAATGGAAGGTAGAATGGTGGAATGGATGGAACCGCCTTGTCTTTTCAGAGCATTTGGATAATGACTTTTTCACTAGTTTTACTTCTTATTGTGAATGactgtttttgtattttcttctgtttttttatttgttgtttttaAATGATGGAAAGTCAGTCTCTTGACTGTTGTGTGAAATCGCATATTTGAAATAATATTGCGTTGATGATGTGTTGAGAACAACACTTGTGGTCAAGTTTTCAGGACTGTATCAAGGCCATATGTTCATGTTTTGGTCAAAATCTGCACTATAAACTTTTACGGTAAATTCTTGAACATGAATAAAACATGAATTGCAAATA

Function

NR:

description
centrosomal protein POC5 isoform X1

GO: NA

KEGG:

id description
K16483 POC5; centrosomal protein POC5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606224.2 False 2475 mRNA 0.52 13 32947034 32961409
XM_021606223.2 True 2576 mRNA 0.53 13 32947034 32962214

Neighbor

gene id symbol gene type direction distance location
LOC110525788 LOC106585037 coding downstream 22624 32883925 ~ 32924410 (-)
LOC110525787 LOC106585035 coding downstream 187083 32750665 ~ 32759951 (-)
LOC110525785 LOC106585030 coding downstream 216358 32690707 ~ 32730676 (-)
LOC110525784 LOC106585031 coding downstream 264135 32680037 ~ 32682899 (-)
LOC110526888 LOC106585027 coding downstream 426134 32508680 ~ 32520900 (-)
LOC110525797 LOC106585042 coding upstream 111487 33073701 ~ 33076106 (-)
LOC110525798 LOC106585045 coding upstream 136852 33099066 ~ 33103756 (-)
LOC110525800 ergi2 coding upstream 152482 33114696 ~ 33130672 (-)
LOC118965074 NA coding upstream 231056 33193270 ~ 33197445 (-)
LOC118965075 NA coding upstream 235952 33198166 ~ 33199518 (-)
G497708 NA non-coding downstream 2287 32944201 ~ 32944747 (-)
G497707 NA non-coding downstream 4540 32942214 ~ 32942494 (-)
G497704 NA non-coding downstream 8720 32937884 ~ 32938314 (-)
G497699 NA non-coding downstream 16263 32927593 ~ 32930771 (-)
G497698 NA non-coding downstream 19502 32927309 ~ 32927532 (-)
G498324 NA non-coding upstream 43221 33005435 ~ 33005636 (-)
G498334 NA non-coding upstream 52672 33014886 ~ 33023041 (-)
G498447 NA non-coding upstream 226908 33189122 ~ 33189398 (-)
G498452 NA non-coding upstream 246882 33209096 ~ 33209696 (-)
G498489 NA non-coding upstream 299163 33261377 ~ 33331621 (-)
G496851 NA other downstream 1054385 31843463 ~ 31892649 (-)
G496777 NA other downstream 1275107 31670978 ~ 31671927 (-)
G496772 NA other downstream 1285416 31661393 ~ 31661618 (-)
G495560 NA other downstream 2371461 30575118 ~ 30575573 (-)
G498484 rpl6 other upstream 365293 33327507 ~ 33330504 (-)
LOC110525812 LOC103397138 other upstream 370436 33332650 ~ 33336818 (-)
G498960 NA other upstream 1078145 34040359 ~ 34041174 (-)
G501142 NA other upstream 2803152 35765366 ~ 35767929 (-)
hk2 LOC106585103 other upstream 3545842 36507843 ~ 36569143 (-)

Expression


Co-expression Network