LOC110525801 (ppc1a)


Basic Information

Item Value
gene id LOC110525801
gene name ppc1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33173522 ~ 33177160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606235.2
GTGGCATCGCACTTTATGCTGCGTtaaagacaactggaaactcgtgAAAAACGGGCTCCGACTGGAAAAAATCGTTTTGAATGGTCccccaactcggaattccaagttgaAAACTCGGGCATCTTTGTAGATCTCCAACTTTCCGTTCTGAACATCATTAaagtcatgatttgacctcgttttttcccgagttcccagttgtcttgaaagcgccATTATACTTCGACACGACCGACAAAGCTTTCTCCTCTGGGCATCTCTCTCGCTATACCGGTTTAGCGGATGGGTGAAGGATGATGATGGAGAGGCCCAGGTCACGGTAGCTAGCAGTGCGAGTATGCGGAGAAAGATTTAGTTAAACACCGAGTTTCAGtTTTGGAGAGGATTCTAGTGGATTTGCCAAGTGATCTGTCTGGAAATTAACCTGATAAACAAGATGAAGAGGGGCTTGCTGCGTGGCTTACTGCCAGAGGTGTCTATCCGACTGCTGCTTCTGGTTGTCTTCCTTGTGACAGAGCAGCTTCCACCCTTTATTCGTGAGATCCAGGCAGAGGAGATGTGGCTGTATAGATTTCACAGAGTGGAGAATGACCATGTCCCCACCTCGCTCATGTTTAGCGTGGCGTGTTTCACTCCATTCCTGGTGATCCTGCTTTTCACCTTTCTGAAGAGAGTTGAGAGCGGAGACGTGAGAGAGGCCTCGCTAGCGGTGACTCTGGCTCTGGTACTGAACGGAGTTTTCACCAACGCCATCAAGCTGGTCGTGGGCCGGCCACGGCCAGACTTCTTCTACCGCTGTTTCCCAGACGGACAGATGAACCTGGAGATGCACTGCAGCGGCGACTCAGAAGTGGTCATGGAGGGCAGGAAGAGCTTTCCCAGTGGACACTCCTCCTTTGCATTCACTGGACTGGGCTTCACAGCGCTGTATGTTGGAGGTAAGCTGCGGTGCTTTAATCTGGGGGGTCGGGGCAGGGCCTGGAGACTGTGTCTCTTCCTCGCTCCCCTCCTCCTAGCCTTCATGATCGCTCTCTCCAGGACCTGCGACTACAAACACCACTGGCAAGATGTGTTGGTGggttctggtctgggtctggtgtTCTCTTGGCTCTGCTACAGACAGCACTACCCCTCCCTCCAGGACCCTGACTGTCACCGGCCACTACGCCACAGAGAGACTGTTCCTGCTGTGCAGGAACGCAAGCTGGCCAACTCCAACTACATATTACCTCTATAGCTGGCCAACTACACATTACCCCTATAGCGCTACTCCAACTATATattggaatcaaatcaaattgtatttgacaCACAcgccgaataaaacaggtgtagaccttacagtgaaatgctcacttacaagcccttaaccaacaatgcagttttaagaaaaaatatgtgttaaagtatttactaaataaactgaagtaaacaatacataaataaaaatggaaaaaaataaaatagataaataacaaataattaaagagcaacaataaaataacagttacgaggctatatacaggagtaaccggtacagagtcaatgtgctggggcacaggttagtcgagttaattgaggtaatatgtacgtgtaggtagaggggggggggggggggggggggcagcgcacaattggcccactattggccggtgtaggccgtcgttgtaaataagaatctgttcttaacttacttgcctagttaaataaaggttaaatacatgtcGTTTTGTATTCAGGAA

Function

NR:

description
phospholipid phosphatase 5-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606235.2 True 1742 mRNA 0.48 8 33173522 33177160

Neighbor

gene id symbol gene type direction distance location
LOC110525799 LOC106585046 coding upstream 8336 33135282 ~ 33165186 (+)
iqgap2 LOC106585041 coding upstream 80780 33008191 ~ 33092742 (+)
sv2ca LOC106585040 coding upstream 169403 32969862 ~ 33004119 (+)
LOC110525793 NA coding upstream 207442 32960820 ~ 32966080 (+)
LOC110525791 LOC106584948 coding upstream 228018 32939914 ~ 32945504 (+)
LOC110525805 LOC106585050 coding downstream 102038 33279198 ~ 33280948 (+)
LOC110525806 LOC106585051 coding downstream 136195 33313355 ~ 33317175 (+)
c6h22orf39 cssa24h22orf39 coding downstream 140418 33317578 ~ 33320353 (+)
LOC110525808 LOC106585052 coding downstream 144779 33321939 ~ 33326388 (+)
LOC110525811 rpl6 coding downstream 150343 33327503 ~ 33331597 (+)
G497740 LOC106585045 non-coding upstream 69739 33088967 ~ 33103783 (+)
G497402 NA non-coding upstream 235432 32937884 ~ 32938090 (+)
G497253 NA non-coding upstream 460317 32653971 ~ 32713205 (+)
G497153 NA non-coding upstream 708110 32464030 ~ 32465412 (+)
G497749 NA non-coding downstream 3155 33180315 ~ 33183152 (+)
G497849 NA non-coding downstream 15918 33193078 ~ 33197388 (+)
G497852 NA non-coding downstream 20982 33198142 ~ 33198539 (+)
G497853 NA non-coding downstream 22105 33199265 ~ 33199491 (+)
G497855 NA non-coding downstream 31690 33208850 ~ 33209789 (+)
polk polk other upstream 244671 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 1860785 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 2162918 31006547 ~ 31022524 (+)
G495132 NA other upstream 2440632 30732352 ~ 30732890 (+)
LOC110525816 LOC106585060 other downstream 284475 33447246 ~ 33465055 (+)
G499111 NA other downstream 973980 34151140 ~ 34151737 (+)
fancc fancc other downstream 6092799 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 6496852 39673964 ~ 39680031 (+)

Expression


Co-expression Network