LOC110525802 (LOC106585047)


Basic Information

Item Value
gene id LOC110525802
gene name LOC106585047
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33201417 ~ 33211246 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606237.2
gcgtgcatgtgagtGGCAGGGTGCTTTATCAGTGCAAGCCAGCTGTGACTTCATACACGCTCATGCCTCAGAGTGACTTAGTAGCAGTCTCACCAACCACTCCTGCCACAAACACACGCAAAGTGAGGATGAGGGGGTTCCCACCATGTGTGACCCCACTACTGGGTCTTCTCATCTTGTTGACCCCAGGGAGGGTTCAAGGGTCATCAAGCTGTCCCCTGTACTGCTCCTGCCATGGTGCTCAGGTAGACTGCAGCAGCCGTGCCCTCACCACCTCTTCCTTACCCTCCCGCTTCCCTCCTGCCACCACCGAGCTCCGTCTCCATGACAACCAGCTGACCACGCTCCCAAACAGCCTTCTggacttcctctcctccctccgctCCGTGTCGCTCCATGGAAACCCCTGGGCCTGTGACTGCGGTGTGCTCTACCTGCGTGCCTGGCTGCTCCGACACCCTGCCAGCTACACCAGCCACAGCAACATCACCTGCAGTTCCCCTCCCCGCCTGCGAGGGACGCTGGTGGTCTACCTGGCTGAGGAGGAGGTGCTGGAGTCCTGTCACTACTGGTACTGTGACTTGGCACTGGCCTCCcaggtgtgtttgtttgtgtttgtggcaGTGCAGGCGGGGCTGCTGGCTGCTGTGATCGTGTTCCTGAGGAGGTTTGAGAGCCTGTCCCGCGAGGCCCGGTGGACCACAGAGGAGAGCTTTGCTGGGGGGGAGGGGCTTACGAGTAATGAGTATAGTGAGTATGAGCCCATGAAGGAAAGCATCATCTgacgaggggaggggagggccaGGTAGGcaaggagagaaaagagggagaggagacacttGAAGGGGACAAGCTGGTGAGCAATAAAATGACGGAGCCCTTTCAGGTCTGTGGTAAGAAAAGAATGAGGATGAGGAGAAAAGGGCTTGTTAGATTCACTGGAAACAGGAAATTCCAGAGAAACTCGCAGGACAAGAAATTAGGCTAAATCGAAGTGGTTCTGCATCTATTTTCAAGGACTTCTTGCAATGTGTTTGTTGGTTACATCAGTCAATAACACTGTTAGAATAATATATCATGCTATGAATCAATAGTACATAGAATATAACATTTAATTGACATTTAATAATGCTGTTTTGTGTCATTGTTTTAAAGCTGCTATTTATCATTTATTTAGATAGCAATAATAAAACAATTGTAAATGGATGCATTTTTAAAGATTTCGGATGTAtatatacttaacaaaaatataaacgcaacatgcaacaatttcaaagattttactgagttagagttcataaaaggaaatcagtcaattgaaatttcacatgactaggaatacagatatgcatctgttggtcacggatacctttaaaaaaagatcagaaaaccagtcagtgtctggtgtgaccaccatttgcctcatggagcgcaacacatctcctccGCATAGAGTTGATCCGGCTGTTGATTGTGTCCAGTAgtatgttgtcccactcctcttcaatggttgtgaaaactttctggatattggcggtaactggaacatgctgttgtacacgtcgatccagagcatcccaaacatgctcaatggtgcaatgtctggtgagtatgcaggccatggaggaactggaacattttcagcttccaggaattgtctacagatccttgcgacatggggccgtgcattatcatactgaaacatggtGATGACGGTGGATGaaaggcacgacaatgggcctcaggatctcattacGGCATAGTTTATGACTGCCCtttccataaccccaccgccactatggggcactctgtttacaacgttgacattagcaaaccgctcgcccacacaacaccatacgtggtctacggttgtgaggccggttggacgtactgccaaaatctctaaaacgacattggagatggcttatggtagagaaattaacataacactttctggcaacagctctggtggactttcctccagtcagcataccaattgcacgctcccgcAAAACTTGAGATTATGTTGTGTTACAAaacactacacattttagagtggcctttcaaTGTttacagcacaaggtgcatctgtgtaatgatcatgctgtttaatcagcttttgatattccacacctgtcaggtggatggattatcctggcaaaggagaaatgctcactaacagggatgtaaacaaatttatgcCCAacgtttgagagaaataagctttttgtgtgtatggaaaatttaacttatcttttatttcagctcatgaaacatgggaccaacactttacatgttgcgtttacgtttttgttcagtgtaattacaATATGATGGTGAATCAGCACAATTTATATTTCCTTGTAATACATGTTTGTGTTTATGTACTTTGATACAGCACGTTAGCTGTTGGCtattttctatattttatttGGAGGTTTtcattatataacattcctaatCCAGCCCATTAAAAATGACTTTGGAAATATGTTTGTGAATTTTCATTCCAGTCGAAGTAGAAGCTTGTctaattgcctgcaatgacatccGTCTTTTTAGACCTAATAACTACAGCCAGAGCCATGTATTTCTACTCTATACATGGATCTAACTACAATAGGCTATTCCATATACTTCCACACAGCGCAGTGGAGGACACCATCATACAAATACACAGTATAGCTTTGTCATAATAGCTATTGTTTGTCAGTTTCATCACATAAAACATAAATATTCACTGGATCATTCAAAAATATTGCAATGCATAAAGAAATAGCTTGCGGAATAAAGTTTTAAGGAAGGAA

Function

NR:

description
platelet glycoprotein Ib beta chain-like isoform X1

GO: NA

KEGG:

id description
K06262 GP1BB, CD42c; platelet glycoprotein Ib beta chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606237.2 True 2807 mRNA 0.45 2 33201417 33211246

Neighbor

gene id symbol gene type direction distance location
LOC118965075 NA coding downstream 1899 33198166 ~ 33199518 (-)
LOC118965074 NA coding downstream 3972 33193270 ~ 33197445 (-)
LOC110525800 ergi2 coding downstream 70745 33114696 ~ 33130672 (-)
LOC110525798 LOC106585045 coding downstream 97661 33099066 ~ 33103756 (-)
LOC110525797 LOC106585042 coding downstream 125311 33073701 ~ 33076106 (-)
LOC110525803 LOC106585048 coding upstream 2139 33213385 ~ 33227655 (-)
LOC110525804 LOC106585049 coding upstream 16567 33227813 ~ 33278199 (-)
LOC110526890 cdc45 coding upstream 87423 33298669 ~ 33313304 (-)
LOC110525810 NA coding upstream 109007 33320253 ~ 33321907 (-)
LOC110525812 LOC103397138 coding upstream 121406 33332650 ~ 33336818 (-)
G498447 NA non-coding downstream 12019 33189122 ~ 33189398 (-)
G498334 NA non-coding downstream 178376 33014886 ~ 33023041 (-)
G498324 NA non-coding downstream 195781 33005435 ~ 33005636 (-)
G497708 NA non-coding downstream 256670 32944201 ~ 32944747 (-)
G497707 NA non-coding downstream 258923 32942214 ~ 32942494 (-)
G498489 NA non-coding upstream 50131 33261377 ~ 33331621 (-)
G498493 NA non-coding upstream 55287 33266533 ~ 33266855 (-)
G498500 LOC106585050 non-coding upstream 67981 33279227 ~ 33280931 (-)
G498503 NA non-coding upstream 72336 33283582 ~ 33288837 (-)
LOC110525784 LOC106585031 other downstream 518570 32680037 ~ 32682899 (-)
G496851 NA other downstream 1308768 31843463 ~ 31892649 (-)
G496777 NA other downstream 1529490 31670978 ~ 31671927 (-)
G496772 NA other downstream 1539799 31661393 ~ 31661618 (-)
G495560 NA other downstream 2625844 30575118 ~ 30575573 (-)
G498484 rpl6 other upstream 116261 33327507 ~ 33330504 (-)
G498960 NA other upstream 829113 34040359 ~ 34041174 (-)
G501142 NA other upstream 2554120 35765366 ~ 35767929 (-)
hk2 LOC106585103 other upstream 3296810 36507843 ~ 36569143 (-)

Expression


Co-expression Network