LOC110525805 (LOC106585050)


Basic Information

Item Value
gene id LOC110525805
gene name LOC106585050
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33279198 ~ 33280948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606244.2
CACACCCCACTCAAAATATATCCGTGGTCCAGACGCTCTATGTTACCAGTTGTTTTTACAGCCAGTcagtaacatactgactaaaATAAATCATTTTTGTAGACTATTTGTAGCAACTTCCTAACTGAAGATCATATATCCTAAAGCGCAGCATCCAGATTGAGACGCGTTGTTAAACACAGAGGACAAATATTATTAATTTTAAATCCGTTAAAAAGGAGCTAAGATGGTGTCCGCTGGACTGGAGATCCTTGGACTGGGACTGTGCGTCATTGGTTCGCTCCTGGTGATGGTCGTTTGCGGGCTGCCCATGTGGAAGGTGACGGCGTTCATCGAGGCCAACATTGTGGTGGCTCAGACCATCTGGGATGGGCTCTGGATGTCCTGTGTGGTGCAGAGCACGGGCCAGATGCAGTGCAAGGTGCACGACTCGGTCCTCGCGCTCGGCCACGACCTGCAAGCGGCGCGAGCCCTGACCGTCATCGCATGTGTGTTTGGCGTGCTGGGGCTAATGGTGGTGATCGCCGGGGCGCAGTGCACCAACTGCATCAATGACGAGAACGTCAAAGCCCGGGTGGTGAACGCCGGAGGGGTTATCTACATAATCAGTGGCTTGTTTGTTTTAGTCCCTCTCTGCTGGATGGCCAACAACATAATCTCGGATTTCTACAACCCACAGGTGCCCGCGTCCAAGAAGAGGGAGATTGGGGCTGCGCTCTACATCGGTTGGGCGGCCACTGCGCTCCTGCTGATCGGGGGCGCGCTCCTCTGCTGCTCCTGTCCTTCTAACGGGAATTCGGGCTACTCGGCGAAATATGCCCCGACCAAACGGGCCACACCGAACGGGACCGTGGACTATGACAAAAGGAATTACGTGTAGCCCTGCGTCTCACCCTCATGATGGGGTGGCTAGGCTGTGCTTAAATGTGGTCTGTGTTTTTTTGAAAAACTTTTTTGAAAAACGTTTTTTGCACCTGCAGTTTACTCTGAACTTTGAAATAAATGAAAGCGTCATTCCCTTTTGTAACACTGACTTTAAACTAAACACAATATTGGAGAAAATATTCATTCATCCTTTTTTTGCAAACAGAAGAAAATAAACGTTTGGAGACTATGCGTATAGCCTAAAGTGATAGCCAATGACAAAAAGGAGCGTCTTTGTTTTAGGTACAGTAATGTTTTAAATGTCCAAGGCTATATTTTCTATAATTGCTCATAAACCTTTGCATTTAGAAATGTTTACCGGAATTTGTTTTTCTAAAAGGAAGTTCTAATGACAATGCTGTCTTTTTACTTCAGTGTAGGCTACAGTGACTTCAGAGTGGTTTAACTCCAAACCACGTAAAAGGTTTTTGGACAATGGGTTTTTGCTGCATGAGACTGTGTGAAGATAGACGAAAACATGTTGGCCTATTTTCAAACCAATACACAACTCAGGCATTCTTACATTTGTCTATAACAGCGAAAAATCACATATATTACACAAATTAGGACCATAGATTTAGATGTCAAATATAGGATGTCCACAACACCTGTTCTGGAGTCTAAATTATTTTAggataaaacaaaacatttagcaaacttgtgttttatatatgtacatattgTGCCAGATGTGTTTCTTTTCATGGATTTTTAGGAATATACTGCTGTTTTACTGACTGGTTTTGATGTAAAGATCCATTGTGTATTTGATGCAATATTCTTCTTTCCATTGTTACACTGACATTAAACGGATATTGTTTAAAGTA

Function

NR:

description
claudin-4-like

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606244.2 True 1751 mRNA 0.44 1 33279198 33280948

Neighbor

gene id symbol gene type direction distance location
LOC110525801 ppc1a coding upstream 102038 33173522 ~ 33177160 (+)
LOC110525799 LOC106585046 coding upstream 114012 33135282 ~ 33165186 (+)
iqgap2 LOC106585041 coding upstream 186456 33008191 ~ 33092742 (+)
sv2ca LOC106585040 coding upstream 275079 32969862 ~ 33004119 (+)
LOC110525793 NA coding upstream 313118 32960820 ~ 32966080 (+)
LOC110525806 LOC106585051 coding downstream 32407 33313355 ~ 33317175 (+)
c6h22orf39 cssa24h22orf39 coding downstream 36630 33317578 ~ 33320353 (+)
LOC110525808 LOC106585052 coding downstream 40991 33321939 ~ 33326388 (+)
LOC110525811 rpl6 coding downstream 46555 33327503 ~ 33331597 (+)
LOC110525814 LOC106585056 coding downstream 71724 33352672 ~ 33367435 (+)
G497855 NA non-coding upstream 69409 33208850 ~ 33209789 (+)
G497853 NA non-coding upstream 79707 33199265 ~ 33199491 (+)
G497852 NA non-coding upstream 80659 33198142 ~ 33198539 (+)
G497849 NA non-coding upstream 81810 33193078 ~ 33197388 (+)
G497749 NA non-coding upstream 96046 33180315 ~ 33183152 (+)
G497921 LOC103397138 non-coding downstream 51702 33332650 ~ 33336735 (+)
G497925 NA non-coding downstream 66127 33347075 ~ 33347369 (+)
G497933 NA non-coding downstream 87766 33368714 ~ 33368925 (+)
G497939 NA non-coding downstream 97958 33378906 ~ 33379166 (+)
G497944 NA non-coding downstream 103676 33384624 ~ 33384857 (+)
polk polk other upstream 350347 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 1966461 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 2268594 31006547 ~ 31022524 (+)
G495132 NA other upstream 2546308 30732352 ~ 30732890 (+)
LOC110525816 LOC106585060 other downstream 180687 33447246 ~ 33465055 (+)
G499111 NA other downstream 870192 34151140 ~ 34151737 (+)
fancc fancc other downstream 5989011 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 6393064 39673964 ~ 39680031 (+)

Expression


Co-expression Network