LOC110525806 (LOC106585051)


Basic Information

Item Value
gene id LOC110525806
gene name LOC106585051
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33313355 ~ 33317175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606245.2
TTCCTGCTGTCATCGTGGCTAAGCGGAAAACAACATAGGAGTTTCAACCAGCAGCCAGTTTGCCGGAGCAGTAATAAGCTATTTAATAGAAGAAGAATAACAAATAAGCTATTTATTATAGCTTTATTCAATACATTTTGATATATAACGTTTTGGCGTACAGTAGCACATCATGTTTTCCTTCAACATGTTTGATCACCCGATCCCACGGGCTTTCCAAAACCGCTTCTCCACTCAATACCGCTGCTACTCTGTGTCCATGCTGGCGGGTCCCAACGACCGGTCGGATGTGGAGAAAGGAGGAAAAATTATAATGCCGCCATCAGCACTTGATCAACTAAGCAGACTTAACATTACCTACCCCATGTTGTTCAAACTGACCAACAAGAACTCAGACAGAATGACACACTGTGGTGTCTTGGAGTTTGTAGCAGATGAGGGTATTTGTTACCTGCCACACTGGATGATGCAGAATCTCCTGCTGGAGGAAGGGGGCCTGGTCCAGGTGGAGAGTGTTAACCTCATGGTGGCAACATACTCCAAGTTCCAGCCTCAGAGCCCAGACTTCCTGGATATCACTAACCCCAAAGCAGTGTTGGAAAATGCCTTGAGAAACTTTGCCTGCTTAACCACAGGAGATGTTATTGCAATTAACTACAATGAAAAGATCTATGAACTGCGAGTGATGGAGACTAAGCCAGACAAGGCCGTATCTATCATTGAATGTGATATGAATGTGGACTTTGATGCTCCGTTGGGTTACAAAGAACCAGAGAGACGTTACAAAGCACCAGAGGAGCCCACAgaagaggaaggagaccCCAGCACTTGGACTGACATGGACATGAGATTCAGAGCCTTCACTGGTTCAGGCAATCGTCTGGATGGCAAAAAGAAAGGCATTGAGCCTAGCCCCGTCCCCATCGATCCCAGTGACATTAAAAGAGGGATTCCTAACTACGAGTACAAGGTCGGAAGGATCACCTTCATCAGAAACTCCAGGCCTCAGCCCAGGAAAACAACAGAGGATGAGGATTCAGAATTCATCGCCTTTTCTGGTGAGGGACAGTCACTACGCAAGAAAGGTGGCAGAAAGCCTTGAGGCACTACAGTATTCAACTGCagagactgactgacttactATAGACTCTACATACCCACACATCCATCATAAGAAACCAATAAAAGCAAGTCATGAAAAGAGCTTGGTTGATTTTTCTGTCCCGTAGCAGGAATCAGCAAGGTTTTACTTTCTTTTGATGATATTGTAACGGTCTTGTCCATGGTCAGCATGTTAAAAGCTCTTCTAAAAAATGGAATGCTATTCGGACTGAGGTTAGTCAGTGGAGACTTCTGCGGAGAGAACGGCTCAcaataatggctggagcggagcgaatggaatggcatcaaaccatgtctTTGATACCATTCAACTTGTGCTGTTCTAGCCATTACCGTCGTCCCCAATtatggtgccaccaacctcctgtggttagAGTACAGGGTTGCTGGTCTGAGCCCAGCCAAAGCCAGCTACCCTTTCCTTTTGCTAcaatatgatgaatataaaaaaaATTCTACCTTGTTTTCTCATAATGGGATTACCCTTGTTGATGATGGAGTGGGTTAGATTTTTCTTTGAATATGTATCAAATTAATTAGGAAACGCTTCTGACATTGGAACCTGTTGAACTCGAACTTTGAGAGTGATGAGTGGTGGAGGTGGATAAGAGCCATTCCTTTGTTTATTGATCAACTCTGAAATAAAGTACAGCGTTTTGAATAAAGTGCACTCTGTATAAA

Function

NR:

description
PREDICTED: ubiquitin fusion degradation protein 1 homolog

GO: NA

KEGG:

id description
K14016 UFD1; ubiquitin fusion degradation protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606245.2 True 1803 mRNA 0.44 12 33313355 33317175

Neighbor

gene id symbol gene type direction distance location
LOC110525805 LOC106585050 coding upstream 32407 33279198 ~ 33280948 (+)
LOC110525801 ppc1a coding upstream 136195 33173522 ~ 33177160 (+)
LOC110525799 LOC106585046 coding upstream 148169 33135282 ~ 33165186 (+)
iqgap2 LOC106585041 coding upstream 220613 33008191 ~ 33092742 (+)
sv2ca LOC106585040 coding upstream 309236 32969862 ~ 33004119 (+)
c6h22orf39 cssa24h22orf39 coding downstream 403 33317578 ~ 33320353 (+)
LOC110525808 LOC106585052 coding downstream 4764 33321939 ~ 33326388 (+)
LOC110525811 rpl6 coding downstream 10328 33327503 ~ 33331597 (+)
LOC110525814 LOC106585056 coding downstream 35497 33352672 ~ 33367435 (+)
LOC110525815 LOC106585058 coding downstream 103238 33420413 ~ 33439671 (+)
G497855 NA non-coding upstream 103566 33208850 ~ 33209789 (+)
G497853 NA non-coding upstream 113864 33199265 ~ 33199491 (+)
G497852 NA non-coding upstream 114816 33198142 ~ 33198539 (+)
G497849 NA non-coding upstream 115967 33193078 ~ 33197388 (+)
G497749 NA non-coding upstream 130203 33180315 ~ 33183152 (+)
G497921 LOC103397138 non-coding downstream 15475 33332650 ~ 33336735 (+)
G497925 NA non-coding downstream 29900 33347075 ~ 33347369 (+)
G497933 NA non-coding downstream 51539 33368714 ~ 33368925 (+)
G497939 NA non-coding downstream 61731 33378906 ~ 33379166 (+)
G497944 NA non-coding downstream 67449 33384624 ~ 33384857 (+)
polk polk other upstream 384504 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 2000618 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 2302751 31006547 ~ 31022524 (+)
G495132 NA other upstream 2580465 30732352 ~ 30732890 (+)
LOC110525816 LOC106585060 other downstream 144460 33447246 ~ 33465055 (+)
G499111 NA other downstream 833965 34151140 ~ 34151737 (+)
fancc fancc other downstream 5952784 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 6356837 39673964 ~ 39680031 (+)

Expression


Co-expression Network