c6h22orf39 (cssa24h22orf39)


Basic Information

Item Value
gene id c6h22orf39
gene name cssa24h22orf39
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33317578 ~ 33320353 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606247.2
aaGGAATTACataaataggcggggtttattaATTTTTGGTTtaggtaactagtgacgaccttTTCACAGTGCTTGATTGGCCGTTTTCGTCCTCTTGTCAAAAGTCAAAACAACGGAGGTGATGATGGCAGATTCTGGAGCAATGTGGAGGCCGCCCCGGACCTGTGATGACTACTGGAGTGAATTCAGACACTGCAAAAGCCTGTGGAACCGTTTCCATAACTACTATGCCCATGGCACATCCCCCTCCTGCGGGCAGTGGAAAGAAGACTACTACTCATGTAGAGAGTGGGAGAAGAACCCATGCCCTGAGACCAAGGAGTCTTTACAGCAGAGTGAGAGGAACCGGGAGGCAGAGCAGAGGAAGTTCACCCCTGTGTGGGACCTGAGACGAGATCCGCCCAGAGACTGGCACATGCCCCTGCACCAGGGAAAGTCCCCAGATTCCCAGTCCTAACCATCCCCTGGGTCAATACTGCCATGGCCCTAATCATGGGCAGACCAAGGTCAATGTGGCATCTGAGATCTGTTTCACTACACAAACTTAACCAATTCTTCTAGCTTTAACTGTAGAGATTGTGGCTAGGGAGCCATGGTCCTGGGGTTATTCAGAGCAATCCATTGACATTAGAGCTAGAATTTTAAAGTACAAGTATTTTTGGAACAAGTCATAATTGTTCATGGCAGAATGTATGTTCTACACAATGTATTTTTACTTTATGTTCTTGAACTTTTCTGAATATGCCCCTTGCAGAGGGTGTGAAGGCTTTTGTCCCAGCTAATATGCTCTTAACCACCTGACTCTTATTGGTTCAGTTGAAACCATGTTTAGAAAGGTGTTTTAGTGCTAGGCTTGGTTGGGGAAAAGCCTGCTCTCCAGGAACAAAACCACTCTGGCGTAGATTTTTTTTCCAGAGGTGTCCAATTTTCTTCACTGGTATTAGGGCGGTGTTCTCTACTGCTAGAAAGTTCTACTCTAATCAAAAACAAAATTATTGATAGTGGCAGAGTGTTGTGCATTCTTTCCATACATTATGTGTGTACTGGGAAATAATATTTTGGGGAACAGCTAAAAGAGATACTGGATTAGGAAAAGGGTAGGCACACCATCCAGTATTCTGGCTTCCACCAGTGGTCTGACTGTTTTTGTCTCGTCATTGTGTGGAAAGAGACTCTACCTATTGCAATTGAGGCCAGTGTTTCTGTAACACCGTTACACAGGATCTTTGCCTTTTATTATTTCACATGATACCTTATCTAGTgttacatacatgcatacataaaaatgcatttcaaataaaacaaatgtgaaTCCTT
>TU565692
cttTTCACAGTGCTTGATTGGCCGTTTTCGTCCTCTTGTCAAAAGTCAAAACAACGGAGGTGATGATGGCAGATTCTGGAGCAATGTGGAGGCCGCCCCGGACCTGTGATGACTACTGGAGTGAATTCAGACACTGCAAAAGCCTGTGGAACCGTTTCCATAACTACTATGCCCATGGCACATCCCCCTCCTGCGGGCAGTGGAAAGAAGACTACTACTCATGTAGAGAGTGGGAGAAGAACCCATGCCCTGAGACCAAGGAGTCTTTACAGCAGAGTGAGAGGAACCGGGAGGCAGAGCAGAGGAAGTTCACCCCTGTGTGGGACCTGAGACGAGATCCGCCCAGAGACTGGCACATGCCCCTGCACCAGGGAAAGTCCCCAGATTCCCAGTCCTAACCATCCCCTGGGTCAATACTGCCATGGCCCTAATCATGGGCAGACCAAGGTCAATGTGGCATCTGAGATCTGTTTCACTACACAAACTTAACCAATTCTTCTAGCTTTAACTGTAGAGATTGTGGCTAGGGAGCCATGGTCCTGGGGTTATTCAGAGCAATCCATTGACATTAGAGCTAGAATTTTAAAGTACAAGTATTTTTGGAACAAGTCATAATTGTTCATGGCAGAATGTATGTTCTACACAATGTATTTTTACTTTATGTTCTTGAACTTTTCTGAATATGCCCCTTGCAGAGGGTGTGAAGGCTTTTGTCCCAGCTAATATGCTCTTAACCACCTGACTCTTATTGGTTCAGTTGAAACCATGTTTAGAAAGGTGTTTTAGTGCTAGGCTTGGTTGGGGAAAAGCCTGCTCTCCAGGAACAAAACCACTCTGGCGTAGATTTTTTTTCCAGAGGTGTCCAATTTTCTTCACTGGTATTAGGGCGGTGTTCTCTACTGCTAGAAAGTTCTACTCTAATCAAAAACAAAATTATTGATAGTGGCAGAGTGTTGTGCATTCTTTCCATACATTATGTGTGTACTGGGAAATAATATTTTGGGGAACAGCTAAAAGAGATACTGGATTAGGAAAAGGGTAGGCACACCATCCAGTATTCTGGCTTCCACCAGTGGTCTGACTGTTTTTGTCTCGTCATTGTGTGGAAAGAGACTCTACCTATTGCAATTGAGGCCAGTGTTTCTGTAACACCGTTACACAGGATCTTTGCCTTTTATTATTTCACATGATACCTTATCTAGTgttacatacatgcatacataaaaatgcatttcaaataaaacaaatgtgaa

Function

NR:

description
UPF0545 protein C22orf39 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606247.2 False 1317 mRNA 0.44 3 33317578 33320353
TU565692 True 1253 TUCP 0.44 3 33317637 33320348

Neighbor

gene id symbol gene type direction distance location
LOC110525806 LOC106585051 coding upstream 403 33313355 ~ 33317175 (+)
LOC110525805 LOC106585050 coding upstream 36630 33279198 ~ 33280948 (+)
LOC110525801 ppc1a coding upstream 140418 33173522 ~ 33177160 (+)
LOC110525799 LOC106585046 coding upstream 152392 33135282 ~ 33165186 (+)
iqgap2 LOC106585041 coding upstream 224836 33008191 ~ 33092742 (+)
LOC110525808 LOC106585052 coding downstream 1586 33321939 ~ 33326388 (+)
LOC110525811 rpl6 coding downstream 7150 33327503 ~ 33331597 (+)
LOC110525814 LOC106585056 coding downstream 32319 33352672 ~ 33367435 (+)
LOC110525815 LOC106585058 coding downstream 100060 33420413 ~ 33439671 (+)
LOC110525816 LOC106585060 coding downstream 126893 33447246 ~ 33465055 (+)
G497855 NA non-coding upstream 107789 33208850 ~ 33209789 (+)
G497853 NA non-coding upstream 118087 33199265 ~ 33199491 (+)
G497852 NA non-coding upstream 119039 33198142 ~ 33198539 (+)
G497849 NA non-coding upstream 120190 33193078 ~ 33197388 (+)
G497749 NA non-coding upstream 134426 33180315 ~ 33183152 (+)
G497921 LOC103397138 non-coding downstream 12297 33332650 ~ 33336735 (+)
G497925 NA non-coding downstream 26722 33347075 ~ 33347369 (+)
G497933 NA non-coding downstream 48361 33368714 ~ 33368925 (+)
G497939 NA non-coding downstream 58553 33378906 ~ 33379166 (+)
G497944 NA non-coding downstream 64271 33384624 ~ 33384857 (+)
polk polk other upstream 388727 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 2004841 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 2306974 31006547 ~ 31022524 (+)
G495132 NA other upstream 2584688 30732352 ~ 30732890 (+)
G499111 NA other downstream 830787 34151140 ~ 34151737 (+)
fancc fancc other downstream 5949606 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 6353659 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 6414431 39734703 ~ 39750180 (+)

Expression


Co-expression Network