LOC110525808 (LOC106585052)


Basic Information

Item Value
gene id LOC110525808
gene name LOC106585052
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33321939 ~ 33326388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606246.2
TCTGGTTACGTCAGATATATACCATTGGTAACATTAGAATAGACATAGCTACATCACGGAATAAATATTCTATCAGTAACCATTTAAAAATATCCTTCCAGTACCATCTGAACATGAAACGTTCGTTGTATCGAATGTTGTTGTCTCAATGATTAGTTACACATTATTTAGGTAAAAGGTCAAGATTTGCCAGGGTTTGGCAGAAAGTGCCCTTAAATTCCCACAGATACACTGACCTTCGTGGACGTGAGGAGGAATCAATATTATGTCACTTATCAGAAgTGTGTTTATTGTGTCTGCTAAGCGGACCCCGTTTGGCACCTACGGCGGGGTTCTGAAAGACCACAGTGCAACAGACCTAGCAGAGCATGCCTCCAAGGCTGCTCTCGCCGCCGGGGGAGTGGCACCCGAGCTTGTCAACAGTGTCATCTTTGGAAACGTCATGCAGAGCTCTGCAGATGCTCCATACATCGCCCGTCACGTGGGCCTGAGGTGTGGGGTGCCCATCCCAGTGCCTGCTCTCACCGTAAACCGCCTGTGTGGATCTGGCTTTCAGTCCATCATCAATGGAGCTCAGgaAATCTGTCTGAAGGACTCAGAGGTGGTATTGTGTGGAGGCTCAGAGAGCATGAGCCAGGCGCCGTATGCTGTCCGCAACGTCCGCTTCGGAACGAAGTTCGGACTCGACCTCAAGCTGGAGGACACTCTGTGGGCGGGACTTACTGACCTGCACATTAAGATCCCCATGGGCATCACAGCAGAGAACCTGGCAGTGAAATACGAGATCAGCAGAGACGACTGTGACAAATACGCACACCAGACACAGCAGAGGTGGAAGGCAGCCCACGAGGCGGGCCACTACACGGCAGAGATCGCGCCCATTGATGTGAAGGCTAAGAAGGGCAAGGTACCCATGACCCAGGACGAGCACCCTCGCCCCCAGACCACCCTGGAGCAGATGGCTAGGCTACCTCCTGTCTTCAAGAAGGAAGGAACGGTCACTGCTGCCAATGCATCAGGCGTGTCAGacggagctgctgccttggtgaTAGCCAGTGAGGAAGCTGTGAAAGAGCACAAGCTCACCCCATTGGCAAGAATAGTGGCATATCACGTCTCCGGATGTGACCCAAGCATTATGGGAATCGGCCCAGTTCCAGCCATCACTGAAGCCCTGAAAAAAGCAGGTCTCACCCTCCAAGACATGGATCTGGTGGAGgtGAATGAGGCGTTTGCTGCTCAGTACCTTGCGGTTTCCAAGGTGTTGGGTCTGGACCCAGAGAAGAGTAATGCCGATGGGGGGGCCATTGCCATCGGGCACCCCCTGGGAGCCTCAGGAGCACGCATCACTGCGCACCTGGTCCACAAGCTCAGGGGGATTGGGGGAAAGTATGCTGTGGGATCAGCCTGCATCGGTGGTGGACAGGGCATCGCCATCATCATAGAGAACACTCACTGAGGAAGAGACCAAACCATGCACACTCAGAAGTGTACTTTCAATACCATCCAAACTCGAAATACACCACACCCTACATACCCAATAGAGTACATGCCATATACACACTCGAATGCGACTTAAGATTTTTGTCCAATGTGGAGTTTAAACACCGGATTGCATCGACTTGAAATGTAAGAATATCCACCCCTCAAGATTTTTGTATGTTTGATGCATACTTTGAAACATCCCAAGACTCTACCACCTACACTCGAAGAAATACACAATATCTCGTCAATTACTCCAGAAAATGATTGCTGTTTACCTAAACACAGAAACAAGGGTGTTTTGTAACCCAAATGTCTGTGATAAACTCCCTCGTATACTTCATATTCCTTTTACCTTTTCTAAATGTTTATGTATGGAAACCATACTGTCTGTATCTGCTTAAAGAGGCCTTGTGAATCTGAAGGGctaaatctgtttttttttttgtaagggacTGTCTTTgtctttgccttgataacagtgCTAGCTCATTGGTTGTACTATTTACCTCTCGCTGTAGCATATTAACAATTGAGATGAGAAGTGTGGTTTGAGTTTGGGTGAAGTTGCTTTCTGTGGAAGGAGAGAAGCATCTCTGCCTCTTCCTTACAGCCTCTCTCTTGCCTTGCATTTTAATATGAATTATCACTCCGCAGGGATCTGCAAGGTTGCATTTAAGATTTGTtagatttttcaaaataaaaaaattatcaaTACA

Function

NR:

description
3-ketoacyl-CoA thiolase, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function

KEGG:

id description
K07508 ACAA2; acetyl-CoA acyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606246.2 True 2201 mRNA 0.48 10 33321939 33326388

Neighbor

gene id symbol gene type direction distance location
c6h22orf39 cssa24h22orf39 coding upstream 1586 33317578 ~ 33320353 (+)
LOC110525806 LOC106585051 coding upstream 4764 33313355 ~ 33317175 (+)
LOC110525805 LOC106585050 coding upstream 40991 33279198 ~ 33280948 (+)
LOC110525801 ppc1a coding upstream 144779 33173522 ~ 33177160 (+)
LOC110525799 LOC106585046 coding upstream 156753 33135282 ~ 33165186 (+)
LOC110525811 rpl6 coding downstream 1115 33327503 ~ 33331597 (+)
LOC110525814 LOC106585056 coding downstream 26284 33352672 ~ 33367435 (+)
LOC110525815 LOC106585058 coding downstream 94025 33420413 ~ 33439671 (+)
LOC110525816 LOC106585060 coding downstream 120858 33447246 ~ 33465055 (+)
LOC110525817 LOC106585059 coding downstream 139604 33465992 ~ 33508271 (+)
G497855 NA non-coding upstream 112150 33208850 ~ 33209789 (+)
G497853 NA non-coding upstream 122448 33199265 ~ 33199491 (+)
G497852 NA non-coding upstream 123400 33198142 ~ 33198539 (+)
G497849 NA non-coding upstream 124551 33193078 ~ 33197388 (+)
G497749 NA non-coding upstream 138787 33180315 ~ 33183152 (+)
G497921 LOC103397138 non-coding downstream 6262 33332650 ~ 33336735 (+)
G497925 NA non-coding downstream 20687 33347075 ~ 33347369 (+)
G497933 NA non-coding downstream 42326 33368714 ~ 33368925 (+)
G497939 NA non-coding downstream 52518 33378906 ~ 33379166 (+)
G497944 NA non-coding downstream 58236 33384624 ~ 33384857 (+)
polk polk other upstream 393088 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 2009202 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 2311335 31006547 ~ 31022524 (+)
G499111 NA other downstream 824752 34151140 ~ 34151737 (+)
fancc fancc other downstream 5943571 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 6347624 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 6408396 39734703 ~ 39750180 (+)

Expression


Co-expression Network