Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110525811 |
| gene name | rpl6 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 33327503 ~ 33331597 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rpl6 | Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and pancreas development. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; epithelial cell of pancreas; and lens. Orthologous to human RPL6 (ribosomal protein L6). |
| description |
|---|
| 60S ribosomal protein L6-like |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02934 | RP-L6e, RPL6; large subunit ribosomal protein L6e |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021606249.2 | True | 836 | mRNA | 0.53 | 7 | 33327503 | 33331597 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525808 | LOC106585052 | coding | upstream | 1115 | 33321939 ~ 33326388 (+) |
| c6h22orf39 | cssa24h22orf39 | coding | upstream | 7150 | 33317578 ~ 33320353 (+) |
| LOC110525806 | LOC106585051 | coding | upstream | 10328 | 33313355 ~ 33317175 (+) |
| LOC110525805 | LOC106585050 | coding | upstream | 46555 | 33279198 ~ 33280948 (+) |
| LOC110525801 | ppc1a | coding | upstream | 150343 | 33173522 ~ 33177160 (+) |
| LOC110525814 | LOC106585056 | coding | downstream | 21075 | 33352672 ~ 33367435 (+) |
| LOC110525815 | LOC106585058 | coding | downstream | 88816 | 33420413 ~ 33439671 (+) |
| LOC110525816 | LOC106585060 | coding | downstream | 115649 | 33447246 ~ 33465055 (+) |
| LOC110525817 | LOC106585059 | coding | downstream | 134395 | 33465992 ~ 33508271 (+) |
| LOC110525819 | slc25a1 | coding | downstream | 183653 | 33515250 ~ 33568701 (+) |
| G497855 | NA | non-coding | upstream | 117714 | 33208850 ~ 33209789 (+) |
| G497853 | NA | non-coding | upstream | 128012 | 33199265 ~ 33199491 (+) |
| G497852 | NA | non-coding | upstream | 128964 | 33198142 ~ 33198539 (+) |
| G497849 | NA | non-coding | upstream | 130115 | 33193078 ~ 33197388 (+) |
| G497749 | NA | non-coding | upstream | 144351 | 33180315 ~ 33183152 (+) |
| G497921 | LOC103397138 | non-coding | downstream | 1053 | 33332650 ~ 33336735 (+) |
| G497925 | NA | non-coding | downstream | 15478 | 33347075 ~ 33347369 (+) |
| G497933 | NA | non-coding | downstream | 37117 | 33368714 ~ 33368925 (+) |
| G497939 | NA | non-coding | downstream | 47309 | 33378906 ~ 33379166 (+) |
| G497944 | NA | non-coding | downstream | 53027 | 33384624 ~ 33384857 (+) |
| LOC110525799 | LOC106585046 | other | upstream | 163242 | 33135282 ~ 33165186 (+) |
| polk | polk | other | upstream | 398652 | 32926258 ~ 32936958 (+) |
| G495920 | LOC106584987 | other | upstream | 2014766 | 31294946 ~ 31312737 (+) |
| si:ch211-225b11.4 | LOC106584980 | other | upstream | 2316899 | 31006547 ~ 31022524 (+) |
| G499111 | NA | other | downstream | 819543 | 34151140 ~ 34151737 (+) |
| fancc | fancc | other | downstream | 5938362 | 39269915 ~ 39312098 (+) |
| LOC110525927 | smim15 | other | downstream | 6342415 | 39673964 ~ 39680031 (+) |
| LOC110525928 | LOC106585161 | other | downstream | 6403187 | 39734703 ~ 39750180 (+) |
