LOC110525815 (LOC106585058)


Basic Information

Item Value
gene id LOC110525815
gene name LOC106585058
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33420413 ~ 33439671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979958.1
ACCCTCCCTCTTCCGCAAAAAAAACTAGAGGCTCGGATAAAAACCGAGAGAAGCAGAGCAGCGATCACACTTCATCGTCAACCCGCCGTGGACCCCCGAAACCAACTGTCACTAGAGGGATATTGAGGACTAGGAACATACCATACACAAGGACAAGCAGAAAAGATCCAGACACAACCATGGCCAGAATATTGGGACTGCTGCTCTTCCTGTCAGCTCTCTGCTGCGCCCTAGCGGACAAAATTGAGCTCCGTCGCGCGAAGAGAGGAACACGCTACTATAGAGCCTGCTATCAGTCAAGGTGCTACAACGGGGGAACCTGTAAGGAGGCGGTCTACTCCTCTgacttcctgtgccagtgtccaCCAGGCTTCACAGGAGCCCAGTGTGAGATCAacaccAATGAGAAGTGCGTGGTGGGCCAGGGTAAAGGGTACCGTGGTACGTGGAGTATCAGTCGGATCGGCTCAGAGTGTATCAACTGGAACTCTACCACCCTCAGAGGGAAGAAGTTCACCGCCAAGAAACCAGAGGCTAACAGCCTGGGGCTAGGCAACCACAACttctgcagaaatcCAGACAATGATACTAAGCCATGGTGTTATGTCTACAAGGGAAACCAAATAGTCTGGGAGTTCTGTACTCTCTCCAGCTGCCCAGCAGACCAGAGGTCAGTGGAGTGTGTGCAGGCCTCGGGGCAGACGTACAGGGGGACGAAGGCCGTCACTAAGAGGGGCTCCAGCTGTCTTCCCTGGGACTCACCCCTCATCACCCGCAAGTTCTACAACGCATGGAGGTCTGACGCCAGACAGCTGGGGCTGGGGAGTCACAACTTCTGCAGGAACCCAGACGGGGATCTCAGCCCCTGGTGTCACGTCTACAAGAACATGAAGCTGACCTGGGAACTCTGCGATATCACCAAATGCACGAGGAGACCAACCACCATTACTACTCTAGGCCCCAGGGCTCccaccagcaacaacaacaacagagGTACCTGTGGCCAGCGTGCTGACAACAATCTCCCCTCCTTCCGTATCCTGGGAGGAGCCCGGAAGAGTGACATCACAGAGCAGCCATGGCAGGCAGCCATAAACGTGTACCGGCCCAGAAACAAAGCACACTTCTTCCAGTGTGGAGGGGTCCTTATAGACTCCTGCTGGGTCCTCTCTGCTGCACACTGCTTCGACGACGGGTTTAAACCAGAGCGGCTGCAGGTGGTTCTAGGCAGAACGTTTCGTAAGAACTCCTCCGGCAGTGAGCAGATCTTTGAGGTGGAGAAGTACTGGAGTCACGAGAAGTACAACAAGACAACCTTTGACAACGACATTGtcTTGATGAAGTTGAAGAGTGATATTGGCCTGTGTGCTGTGAACGCGCCTGAGGTCCTACCCGCCTGTCTGCCTGACCCAGGCCTGGTACTGCCCGACTGGACCGAGTGTGAGATCTCTGGCTACGGCAAGGAGAAAGAGTTTGATGCGATATACTCTGAGCGGGTGAAGAGGGGTCACGTGAGGTTGTGGCCTCAGGACCGCTGTGTCCCTCATGTCTTATCTGAACGTGTGGTCACCTCCAACATGCTGTGTGCCGGGGACACCCGGGGTCTGGACGACGCCTGCAAGGGGGACTCTGGTGGTCCTCTTGTCTGTCCCAAGGATGGGAGGATGACTCTGATGGGGCTGATCAGCTGGGGAGATGGCTGTGGGAAGAAAGACAAGCCTGGGGTGTACACACGTGTTACACAATACACTGACTGGATCAGCAGCAAGAAACAGGAAACTAGccagtaaacaaacacacaaacacatgcacatacacacacctggaGAGAACTTGTGAGAGAATTCATCTGACTCCATCATCAGAGAATTCATCAGACTCCTGTCCATCAATCGCAATGAATGCCTTAACCAAGGAACAGACAACCACTTAACGCACGACAGGAACTGCCAGTACTCCAGTACATTCTGTGTAAGCATTGTTTAACTCTTGTGCTTAGAGGTAGGATGCAGTAAGGTCAGAAAAAACTAAGAAAACAATGTCTCCAAagtgaatagactgttaatcagtcCAGCTCAGTGCCTTCCAGCTGATTCCTGTTCTACCCAGAGCTATATATCTCCATATGCAGCTCACAGAATGTTGGACATTTACTTTGCACACAAGGTTCCATAGGAATGTAAATAGCCACTCCAATTAACATTTTTCAGTTCATTTAGAGGGAATTTTACATTGGTGGCTTGCTGTCTGAATGTTGCCATGTTACATCAGTGCATATATTACCCAATCCCACTATAACATTAACCACAAGACAATCTGCTGGATCAGAGTCAATGTAAGACAGCGGCTGCATTCCAAACTGATCCTTGAACTGCATGAACAAAGGGGTTGAGTTGTCAAATTGGAATAAAGCCAGAGCCTGAACACAGCCACCATTATCTGTCTCCATTCCATAAGCGTTGGGTTGAGCCCAGCGATCAGCATGTACAGTATTTTAATGTTGGTTTTATGTTGAAAAGGACTGGGAGGTGTTTGCAATGACTGggtgtatgtactgtatctaacATAAGCTCTTTGCTTGCAAAGCACTTGGACTCCACTTCCCTCCCATAGTATAGTATTTGGTTATGTTTGAGTGGGTGTTCATATTATGTAGTATCTCATAAACATACACTCTCTCAAGGACAGTAATGTTTTACTTGTGTGTATTAAGTTAATATTTATGTCTATtaatattacactttttttcCTACTGTAATAGTTTATGTTTTTTTAGTAGTTCAATGTGTTGTGTTTTGGAATTGCTGTTTATGTTGATCATTTATTTCTGGGGCTATCATAAGAATGACATACACCCGTctctttaaataaaaaaaacatttaagtgAAGT
>XM_036979956.1
CCCTCCCTCTTCCGCAAAAAAAACTAGAGGCTCGGATAAAAACCGAGAGAAGCAGAGCAGCGATCACACTTCATCGTCAACCCGCCGTGGACCCCCGAAACCAACTGTCACTAGAGGGATATTGAGGACTAGGAACATACCATACACAAGGACAAGCAGAAAAGATCCAGACACAACCATGGCCAGAATATTGGGACTGCTGCTCTTCCTGTCAGCTCTCTGCTGCGCCCTAGCGGACAAAATTGAGCTCCGTCGCGCGAAGAGAGGAACACGCTACTATAGAGcgcGTTGTGTGGATGGCCAGTCAGCTGCGGTGCGTGGTTATGGGGACACATGGATGAGATGGAGGGGCCAGCGTGTGGAGTACTGCCGCTGTGCATCACAAGGACGAGAGCGCTGTCACTACGTGCCCGTCATCACCTGCTATCAGTCAAGGTGCTACAACGGGGGAACCTGTAAGGAGGCGGTCTACTCCTCTgacttcctgtgccagtgtccaCCAGGCTTCACAGGAGCCCAGTGTGAGATCAacaccAATGAGAAGTGCGTGGTGGGCCAGGGTAAAGGGTACCGTGGTACGTGGAGTATCAGTCGGATCGGCTCAGAGTGTATCAACTGGAACTCTACCACCCTCAGAGGGAAGAAGTTCACCGCCAAGAAACCAGAGGCTAACAGCCTGGGGCTAGGCAACCACAACttctgcagaaatcCAGACAATGATACTAAGCCATGGTGTTATGTCTACAAGGGAAACCAAATAGTCTGGGAGTTCTGTACTCTCTCCAGCTGCCCAGCAGACCAGAGGTCAGTGGAGTGTGTGCAGGCCTCGGGGCAGACGTACAGGGGGACGAAGGCCGTCACTAAGAGGGGCTCCAGCTGTCTTCCCTGGGACTCACCCCTCATCACCCGCAAGTTCTACAACGCATGGAGGTCTGACGCCAGACAGCTGGGGCTGGGGAGTCACAACTTCTGCAGGAACCCAGACGGGGATCTCAGCCCCTGGTGTCACGTCTACAAGAACATGAAGCTGACCTGGGAACTCTGCGATATCACCAAATGCACGAGGAGACCAACCACCATTACTACTCTAGGCCCCAGGGCTCccaccagcaacaacaacaacagagGTACCTGTGGCCAGCGTGCTGACAACAATCTCCCCTCCTTCCGTATCCTGGGAGGAGCCCGGAAGAGTGACATCACAGAGCAGCCATGGCAGGCAGCCATAAACGTGTACCGGCCCAGAAACAAAGCACACTTCTTCCAGTGTGGAGGGGTCCTTATAGACTCCTGCTGGGTCCTCTCTGCTGCACACTGCTTCGACGACGGGTTTAAACCAGAGCGGCTGCAGGTGGTTCTAGGCAGAACGTTTCGTAAGAACTCCTCCGGCAGTGAGCAGATCTTTGAGGTGGAGAAGTACTGGAGTCACGAGAAGTACAACAAGACAACCTTTGACAACGACATTGtcTTGATGAAGTTGAAGAGTGATATTGGCCTGTGTGCTGTGAACGCGCCTGAGGTCCTACCCGCCTGTCTGCCTGACCCAGGCCTGGTACTGCCCGACTGGACCGAGTGTGAGATCTCTGGCTACGGCAAGGAGAAAGAGTTTGATGCGATATACTCTGAGCGGGTGAAGAGGGGTCACGTGAGGTTGTGGCCTCAGGACCGCTGTGTCCCTCATGTCTTATCTGAACGTGTGGTCACCTCCAACATGCTGTGTGCCGGGGACACCCGGGGTCTGGACGACGCCTGCAAGGGGGACTCTGGTGGTCCTCTTGTCTGTCCCAAGGATGGGAGGATGACTCTGATGGGGCTGATCAGCTGGGGAGATGGCTGTGGGAAGAAAGACAAGCCTGGGGTGTACACACGTGTTACACAATACACTGACTGGATCAGCAGCAAGAAACAGGAAACTAGccagtaaacaaacacacaaacacatgcacatacacacacctggaGAGAACTTGTGAGAGAATTCATCTGACTCCATCATCAGAGAATTCATCAGACTCCTGTCCATCAATCGCAATGAATGCCTTAACCAAGGAACAGACAACCACTTAACGCACGACAGGAACTGCCAGTACTCCAGTACATTCTGTGTAAGCATTGTTTAACTCTTGTGCTTAGAGGTAGGATGCAGTAAGGTCAGAAAAAACTAAGAAAACAATGTCTCCAAagtgaatagactgttaatcagtcCAGCTCAGTGCCTTCCAGCTGATTCCTGTTCTACCCAGAGCTATATATCTCCATATGCAGCTCACAGAATGTTGGACATTTACTTTGCACACAAGGTTCCATAGGAATGTAAATAGCCACTCCAATTAACATTTTTCAGTTCATTTAGAGGGAATTTTACATTGGTGGCTTGCTGTCTGAATGTTGCCATGTTACATCAGTGCATATATTACCCAATCCCACTATAACATTAACCACAAGACAATCTGCTGGATCAGAGTCAATGTAAGACAGCGGCTGCATTCCAAACTGATCCTTGAACTGCATGAACAAAGGGGTTGAGTTGTCAAATTGGAATAAAGCCAGAGCCTGAACACAGCCACCATTATCTGTCTCCATTCCATAAGCGTTGGGTTGAGCCCAGCGATCAGCATGTACAGTATTTTAATGTTGGTTTTATGTTGAAAAGGACTGGGAGGTGTTTGCAATGACTGggtgtatgtactgtatctaacATAAGCTCTTTGCTTGCAAAGCACTTGGACTCCACTTCCCTCCCATAGTATAGTATTTGGTTATGTTTGAGTGGGTGTTCATATTATGTAGTATCTCATAAACATACACTCTCTCAAGGACAGTAATGTTTTACTTGTGTGTATTAAGTTAATATTTATGTCTATtaatattacactttttttcCTACTGTAATAGTTTATGTTTTTTTAGTAGTTCAATGTGTTGTGTTTTGGAATTGCTGTTTATGTTGATCATTTATTTCTGGGGCTATCATAAGAATGACATACACCCGTctctttaaataaaaaaaacatttaagtgAAGT
>XM_036979957.1
CTAGAGGCTCGGATAAAAACCGAGAGAAGCAGAGCAGCGATCACACTTCATCGTCAACCCGCCGTGGACCCCCGAAACCAACTGTCACTAGAGGGATATTGAGGACTAGGAACATACCATACACAAGGACAAGAAAAGATCCAGACACAACCATGGCCAGAATATTGGGACTGCTGCTCTTCCTGTCAGCTCTCTGCTGCGCCCTAGCGGACAAAATTGAGCTCCGTCGCGCGAAGAGAGGAACACGCTACTATAGAGcgcGTTGTGTGGATGGCCAGTCAGCTGCGGTGCGTGGTTATGGGGACACATGGATGAGATGGAGGGGCCAGCGTGTGGAGTACTGCCGCTGTGCATCACAAGGACGAGAGCGCTGTCACTACGTGCCCGTCATCACCTGCTATCAGTCAAGGTGCTACAACGGGGGAACCTGTAAGGAGGCGGTCTACTCCTCTgacttcctgtgccagtgtccaCCAGGCTTCACAGGAGCCCAGTGTGAGATCAacaccAATGAGAAGTGCGTGGTGGGCCAGGGTAAAGGGTACCGTGGTACGTGGAGTATCAGTCGGATCGGCTCAGAGTGTATCAACTGGAACTCTACCACCCTCAGAGGGAAGAAGTTCACCGCCAAGAAACCAGAGGCTAACAGCCTGGGGCTAGGCAACCACAACttctgcagaaatcCAGACAATGATACTAAGCCATGGTGTTATGTCTACAAGGGAAACCAAATAGTCTGGGAGTTCTGTACTCTCTCCAGCTGCCCAGCAGACCAGAGGTCAGTGGAGTGTGTGCAGGCCTCGGGGCAGACGTACAGGGGGACGAAGGCCGTCACTAAGAGGGGCTCCAGCTGTCTTCCCTGGGACTCACCCCTCATCACCCGCAAGTTCTACAACGCATGGAGGTCTGACGCCAGACAGCTGGGGCTGGGGAGTCACAACTTCTGCAGGAACCCAGACGGGGATCTCAGCCCCTGGTGTCACGTCTACAAGAACATGAAGCTGACCTGGGAACTCTGCGATATCACCAAATGCACGAGGAGACCAACCACCATTACTACTCTAGGCCCCAGGGCTCccaccagcaacaacaacaacagagGTACCTGTGGCCAGCGTGCTGACAACAATCTCCCCTCCTTCCGTATCCTGGGAGGAGCCCGGAAGAGTGACATCACAGAGCAGCCATGGCAGGCAGCCATAAACGTGTACCGGCCCAGAAACAAAGCACACTTCTTCCAGTGTGGAGGGGTCCTTATAGACTCCTGCTGGGTCCTCTCTGCTGCACACTGCTTCGACGACGGGTTTAAACCAGAGCGGCTGCAGGTGGTTCTAGGCAGAACGTTTCGTAAGAACTCCTCCGGCAGTGAGCAGATCTTTGAGGTGGAGAAGTACTGGAGTCACGAGAAGTACAACAAGACAACCTTTGACAACGACATTGtcTTGATGAAGTTGAAGAGTGATATTGGCCTGTGTGCTGTGAACGCGCCTGAGGTCCTACCCGCCTGTCTGCCTGACCCAGGCCTGGTACTGCCCGACTGGACCGAGTGTGAGATCTCTGGCTACGGCAAGGAGAAAGAGTTTGATGCGATATACTCTGAGCGGGTGAAGAGGGGTCACGTGAGGTTGTGGCCTCAGGACCGCTGTGTCCCTCATGTCTTATCTGAACGTGTGGTCACCTCCAACATGCTGTGTGCCGGGGACACCCGGGGTCTGGACGACGCCTGCAAGGGGGACTCTGGTGGTCCTCTTGTCTGTCCCAAGGATGGGAGGATGACTCTGATGGGGCTGATCAGCTGGGGAGATGGCTGTGGGAAGAAAGACAAGCCTGGGGTGTACACACGTGTTACACAATACACTGACTGGATCAGCAGCAAGAAACAGGAAACTAGccagtaaacaaacacacaaacacatgcacatacacacacctggaGAGAACTTGTGAGAGAATTCATCTGACTCCATCATCAGAGAATTCATCAGACTCCTGTCCATCAATCGCAATGAATGCCTTAACCAAGGAACAGACAACCACTTAACGCACGACAGGAACTGCCAGTACTCCAGTACATTCTGTGTAAGCATTGTTTAACTCTTGTGCTTAGAGGTAGGATGCAGTAAGGTCAGAAAAAACTAAGAAAACAATGTCTCCAAagtgaatagactgttaatcagtcCAGCTCAGTGCCTTCCAGCTGATTCCTGTTCTACCCAGAGCTATATATCTCCATATGCAGCTCACAGAATGTTGGACATTTACTTTGCACACAAGGTTCCATAGGAATGTAAATAGCCACTCCAATTAACATTTTTCAGTTCATTTAGAGGGAATTTTACATTGGTGGCTTGCTGTCTGAATGTTGCCATGTTACATCAGTGCATATATTACCCAATCCCACTATAACATTAACCACAAGACAATCTGCTGGATCAGAGTCAATGTAAGACAGCGGCTGCATTCCAAACTGATCCTTGAACTGCATGAACAAAGGGGTTGAGTTGTCAAATTGGAATAAAGCCAGAGCCTGAACACAGCCACCATTATCTGTCTCCATTCCATAAGCGTTGGGTTGAGCCCAGCGATCAGCATGTACAGTATTTTAATGTTGGTTTTATGTTGAAAAGGACTGGGAGGTGTTTGCAATGACTGggtgtatgtactgtatctaacATAAGCTCTTTGCTTGCAAAGCACTTGGACTCCACTTCCCTCCCATAGTATAGTATTTGGTTATGTTTGAGTGGGTGTTCATATTATGTAGTATCTCATAAACATACACTCTCTCAAGGACAGTAATGTTTTACTTGTGTGTATTAAGTTAATATTTATGTCTATtaatattacactttttttcCTACTGTAATAGTTTATGTTTTTTTAGTAGTTCAATGTGTTGTGTTTTGGAATTGCTGTTTATGTTGATCATTTATTTCTGGGGCTATCATAAGAATGACATACACCCGTctctttaaataaaaaaaacatttaagtgAAGT

Function

NR:

description
tissue-type plasminogen activator-like

GO: NA

KEGG:

id description
K01343 PLAT; tissue plasminogen activator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979958.1 False 2891 mRNA 0.49 14 33420413 33439671
XM_036979956.1 False 3025 mRNA 0.49 15 33420414 33439671
XM_036979957.1 True 2999 mRNA 0.49 15 33420437 33439671

Neighbor

gene id symbol gene type direction distance location
LOC110525814 LOC106585056 coding upstream 52978 33352672 ~ 33367435 (+)
LOC110525811 rpl6 coding upstream 88816 33327503 ~ 33331597 (+)
LOC110525808 LOC106585052 coding upstream 94025 33321939 ~ 33326388 (+)
c6h22orf39 cssa24h22orf39 coding upstream 100060 33317578 ~ 33320353 (+)
LOC110525806 LOC106585051 coding upstream 103238 33313355 ~ 33317175 (+)
LOC110525816 LOC106585060 coding downstream 7575 33447246 ~ 33465055 (+)
LOC110525817 LOC106585059 coding downstream 26321 33465992 ~ 33508271 (+)
LOC110525819 slc25a1 coding downstream 75579 33515250 ~ 33568701 (+)
LOC110525821 LOC106585065 coding downstream 161013 33600684 ~ 33691211 (+)
LOC110525823 LOC106585068 coding downstream 289425 33729096 ~ 33750556 (+)
G497958 NA non-coding upstream 18888 33401208 ~ 33401525 (+)
G497948 NA non-coding upstream 31994 33388179 ~ 33388419 (+)
G497946 NA non-coding upstream 33781 33385727 ~ 33386632 (+)
G497945 NA non-coding upstream 35035 33385161 ~ 33385378 (+)
G497944 NA non-coding upstream 35556 33384624 ~ 33384857 (+)
G498010 NA non-coding downstream 73559 33513230 ~ 33513454 (+)
G498018 NA non-coding downstream 82650 33522321 ~ 33522610 (+)
G498174 NA non-coding downstream 338547 33778218 ~ 33779928 (+)
LOC110525799 LOC106585046 other upstream 256152 33135282 ~ 33165186 (+)
polk polk other upstream 491562 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 2107676 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 2409809 31006547 ~ 31022524 (+)
G499111 NA other downstream 711469 34151140 ~ 34151737 (+)
fancc fancc other downstream 5830288 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 6234341 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 6295113 39734703 ~ 39750180 (+)

Expression


Co-expression Network