LOC110525816 (LOC106585060)


Basic Information

Item Value
gene id LOC110525816
gene name LOC106585060
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33447246 ~ 33465055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979959.1
GGGTGGAATGCAAAtgatcagagagaaagagagagagagagagagagagagagaggcgcatCAGGACTGTTGTAGCTGCTAGCCTAACTGTTCATAGTTCAGTGTTCCTTGTCCCGCTCTTACTCTAATGTGTATTTGCATCTGAGGTCAGCAACAAAGGAATTTCCTcatgagttgagaggagagacTCCAAAATTATGACAATGAGTTTCTTTGGAAAATTGAAGAACCTACACAGTGGGCCTCCAGCTCCACCCAAAAGAATAGAGAACAATGCGGGGTATGGTGGCTGGCCAGAAGATGAGTTTGACGATGAGGATGGGAACACATATGAGGCTCCCCCCTGTGAGCGACCGGCCATGAAGGTTCCTCCCAGACATGTGGAGGAGAACGTCTATTTAGATAGTTCTTCAGAGAGGTCCAATCGTGTTCTTCCCAAAAGGCAGGCAGCACCACCCCCAAGGCCAGCCAAGATGGCGCCCATGGGCAAAGCATCGAAACAGCAGCCTCACCATCAGCCTGACCCTGAGGAGTTCTACATCGACCCCAACACCAAGAAACctcctgaGGTAGACAGGAAGGAGAAGCCAGGGAAAAGGTCTACTCCTAAGAAGTCTGCCCCTCCTCCTTCCCGCCCTGCCTCTGctcccacccctccccctgcAGAGGAAGATGTCTACCTGGATCCTAATGAAGGACAGGCAGACAGTGATGACCTGTATCTGGAGCCCACAGCAGCTTGCCCCCCTGCTCCTCGCGGGCCCATAAGGATGCCCCTCCTACCCAAGACAGCAATTGCCCCTCCCCCCATGCCCATaAAACCTCCAGTACCCAGAGCCAAGTCGAGTTCTCTACTGGTCAGTGAGGCAAAGACAGCTCCTCCGCCTGATGTGAAACGCTCCACGTTCCCTGGCAAGCTGCCCCCACCCACCCCAGGCATCAAACCCCCCCTCCCTGCATCCCTAAAGGAACCCAAACCCAGCCCCCCTCCCCCGCCCATTATAGACACTACCGCAGCAGTTTCTCCCTCTGGTATGCAGACAACCATGCAGGCAGGAAAGGAGGAGAAAGAGTGGTTCGCTGGAAACTGCAATAGAAAGACTGCTGAGGACCTCTTAATGCAGATCAACAAGGATGGGGCATTCCTGATACGTCACAGTTCAGCCCAGAACGCCCGTCAGCCCTACACACTGGCTGTCCTATACAGACAGAAGGTCTATAACATCCCCATCCGCTTTCTGGAGGAGACGCGCGGCTACGCCCTCGGAAAGGAGGGCAAGAAGAACGAGGAGtTTTTCAGTAGTCTCCAGGAGATCATCTCTCACCACAAGAATAACCAACTGCTGCTGATCGATAGCAAGAGTCAGGCCAAGCACACCACGTATCTCACCCATCCAGCCCATCCATAAACAACATTATCCATAACCCACACACAATATATATCACCCACCCAGCCTGacaaactacactacactactatagggtggcaggtagcctagcggttagagcgttgggccagtaactgaaatgtcGCTGATTTGAATACTTGAGTCGATAAGGTGAAAAAtcggtcaatgtgcccttgagcaaggcacctaatttgctccagggccGCCGTGCTACTATTGCTGACCCTGTCCAAAAAAAcacatcactgcacctgtacatttcACTTCgctgtatgtgacaataaatcAAAAATCTTTTCATAACCCACAGAAATGTGTATCTCACCTACACCAGCCCATTCATAAAGTACATTAAATGCTACCATTAATAACTAAATACATTTGATAACTTGGAAATACTACCTTCAATCGTCATGTTCCTCACCACAAGATATCCATTACAAACCCTCgtttttgttttgtgatgaaAATGGCTAGAAGTGTACATATTACCGTAtatctgtgtactgtatgtgtttgtgtgtttaagtATGCTGTAATTATGTCTGTTTGACTTTATTAACCTATTTTTGATTGAAATTAGATTAATTTTAAAATGCTTGCACCTGAATAGAGTAGTGAGTAGTCTATGAAAAGGTATATTCAATACCTCATTCTTGCTCTGAGTCTTTATGCAGTGCTTGTTTCAGTGAGTGATGGGGAATTCAATTTTGTGTCTACACCTGTGTTGTGACTGAATACTGTGTAAGTGGGCCATCTGTAAGTTTCtatttatataataatatagtctgAAATGTTTTGAAA
>TU565715
CCGCCCATTATAGACACTACCGCAGCAGTTTCTCCCTCTGGTATGCAGACAACCATGCAGGCAGGAAAGGAGGAGAAAGAGTGGTTCGCTGGAAACTGCAATAGAAAGACTGCTGAGGACCTCTTAATGCAGATCAACAAGGATGGGGCATTCCTGATACGTCACAGTTCAGCCCAGAACGCCCGTCAGCCCTACACACTGGCTGTCCTATACAGACAGAAGGTCTATAACATCCCCATCCGCTTTCTGGAGGAGACGCGCGGCTACGCCCTCGGAAAGGAGGGCAAGAAGAACGAGGAGtTTTTCAGTAGTCTCCAGGAGATCATCTCTCACCACAAGAATAACCAACTGCTGCTGATCGATAGCAAGAGTCAGGCCAAGCACACCACGTATCTCACCCATCCAGCCCATCCATAAACAACATTATCCATAACCCACACACAATATATATCACCCACCCAGCCTGacaaactacactacactactatagggtggcaggtagcctagcggttagagcgttgggccagtaactgaaatgtcGCTGATTTGAATACTTGAGTCGATAAGGTGAAAAAtcggtcaatgtgcccttgagcaaggcacctaatttgctccagggccGCCGTGCTACTATTGCTGACCCTGTCCAAAAAAAcacatcactgcacctgtacatttcACTTCgctgtatgtgacaataaatcAAAAATCTTTTCATAACCCACAGAAATGTGTATCTCACCTACACCAGCCCATTCATAAAGTACATTAAATGCTACCATTAATAACTAAATACATTTGATAACTTGGAAATACTACCTTCAATCGTCATGTTCCTCACCACAAGATATCCATTACAAACCCTCgtttttgttttgtgatgaaAATGGCTAGAAGTGTACATATTACCGTAtatctgtgtactgtatgtgtttgtgtgtttaagtATGCTGTAATTATGTCTGTTTGACTTTATTAACCTATTTTTGATTGAAATTAGATTAATTTTAAAATGCTTGCACCTGAATAGAGTAGTGAGTAGTCTATGAAAAGGTATATTCAATACCTCATTCTTGCTCTGAGTCTTTATGCAGTGCTTGTTTCAGTGAGTGATGGGGAATTCAATTTTGTGTCTACACCTGTGTTGTGACTGAATACTGTGTAAGTGGGCCATCTGTAAGTTTCtatttatataataatatagtctgAAATGTTTTGAAATCCTGTTTGTGTTTTATAATTTTGTTGTATTTGCAACACAACAGCGTGAATGGCATTTATTTCCCTCAAAGTTGAAGTTGTTAGTTTAGATCTCCATAAATGCAAGGATTCactaattccacaaattaactttcaagaaggcacacctgttaattgaaatgcattccaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgccatcaaggcaaagggtggctatttgaagaatctcaaatataaaatatattttgattgg

Function

NR:

description
B-cell linker protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979959.1 False 2213 mRNA 0.48 19 33447246 33464776
TU565715 True 1500 TUCP 0.41 5 33461635 33465055

Neighbor

gene id symbol gene type direction distance location
LOC110525815 LOC106585058 coding upstream 7575 33420413 ~ 33439671 (+)
LOC110525814 LOC106585056 coding upstream 79811 33352672 ~ 33367435 (+)
LOC110525811 rpl6 coding upstream 115649 33327503 ~ 33331597 (+)
LOC110525808 LOC106585052 coding upstream 120858 33321939 ~ 33326388 (+)
c6h22orf39 cssa24h22orf39 coding upstream 126893 33317578 ~ 33320353 (+)
LOC110525817 LOC106585059 coding downstream 1216 33465992 ~ 33508271 (+)
LOC110525819 slc25a1 coding downstream 50474 33515250 ~ 33568701 (+)
LOC110525821 LOC106585065 coding downstream 135908 33600684 ~ 33691211 (+)
LOC110525823 LOC106585068 coding downstream 264320 33729096 ~ 33750556 (+)
LOC110525824 LOC106585069 coding downstream 291328 33756104 ~ 33766480 (+)
G497958 NA non-coding upstream 45721 33401208 ~ 33401525 (+)
G497948 NA non-coding upstream 58827 33388179 ~ 33388419 (+)
G497946 NA non-coding upstream 60614 33385727 ~ 33386632 (+)
G497945 NA non-coding upstream 61868 33385161 ~ 33385378 (+)
G497944 NA non-coding upstream 62389 33384624 ~ 33384857 (+)
G498010 NA non-coding downstream 48454 33513230 ~ 33513454 (+)
G498018 NA non-coding downstream 57545 33522321 ~ 33522610 (+)
G498174 NA non-coding downstream 313442 33778218 ~ 33779928 (+)
LOC110525799 LOC106585046 other upstream 282985 33135282 ~ 33165186 (+)
polk polk other upstream 518395 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 2134509 31294946 ~ 31312737 (+)
si:ch211-225b11.4 LOC106584980 other upstream 2436642 31006547 ~ 31022524 (+)
G499111 NA other downstream 686364 34151140 ~ 34151737 (+)
fancc fancc other downstream 5805183 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 6209236 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 6270008 39734703 ~ 39750180 (+)
G505988 NA other downstream 6497876 39962652 ~ 39963098 (+)

Expression


Co-expression Network