LOC110525819 (slc25a1)


Basic Information

Item Value
gene id LOC110525819
gene name slc25a1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33515250 ~ 33568701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606258.2
GATATATACGCGTTCTCTCCTAGCACGACTGCCAGCTGTGTAGTAGCCCACTGTCCACATACAGCGGAGGTCTGAAGGCTACACTCAGCATCACTGGTCAGACAGCATCACAGCAAAATTGATCAGTCCTTAGTCTTGGTGTGCATGCACTGAACGTTATAATAACCATCAACTAGTTTTTTTAGGACAAAATAACAGTTTTGTAGACTTAGTTTTATAGCTAGATAGATATTTGTTAAATTATTTCTTTACAATGGAAGGAAACAGGAAATTAATCAGTCCCTTTCACCGACCACGGTGCCTGGCGGCGGCGGCACCTGGAGGGAAAGCCAAATTAACTCACCCAGGGAAGGCGATTCTAGCAGGTGGTATAGCAGGGGGTATAGAGATCTGTATCACCTTCCCTACTGAGTATGTGAAGACTCAGCTACAGCTGGACGAGAAGGCCAACCCTCCAAAATACAGGGGCATCGGTGACTGTGTAAAGCAGACGGTACAGGGTCACGGGGTGAGAGGACTGTACAGAGGACTCAGCTCACTGCTCTACGGATCCATACCCAAATCAGCTGTCAGgTTTGGCGTGTTTGAGTATCTCAGTAACCATGCCCGTGATGAGGCAGGGAAGTTGAACAGCACCAGGGGTCTGTTATGTGGGCTTGGTGCTGGAGTCATGGAGGCTGTAGTCATAGTCTGTCCCATGGAGACTGTCAAGGTTAAATTCATCCACGACCAGTCTTCAGCCAACCCCAAATACAGAGGCTTCTACCATGGAGTCAGGGAGATCATCAGAACCCAAGGTATTAAGGGGACGTACCAGGGTCTGACGGCCACCGTCCTGAAGCAGGGCTCCAACCAGGCCATCCGCTTCTATGTCATGACCTCCCTCAGGAACTGGTACAAAGGGGATAACCCCAATAAGGCTATTAACCCTGTGGTGACGGGAACGTTTGGAGCCGTCGCAGGAGCAGCCAGCGTGTTTGGGAACACCCCTCTAGATGTCATCAAGACCAGGATGCAGgGTTTGGAGTCTCATAAGTATAAGAGTACGCTGGACTGTGCCTTGAAGATCATGAGACACGAGGGTGTACGAGCGTTCTATAAGGGGACGGTTCCTCGGCTGGGTCGTGTGTGCCTGGATGTGGCCATCGTCTTCATCATCTATGAGGAGGTGGTCAAGGTTCTCAACACGGTCTGGAAGACAGAGTGAGGGGGCAGGGCTGGAGCCTCTTCTGACCTCACTGGGCCAAACACGATGTGACTGGACAACTGAGCCTTCTACCAGTCTGCGTCTCAAacaacaccttattccctatatacagtagtgtgctacttttgacccaTCAGGCTCCCATCAGGACcaccaggctctggtcaaaagtagggcattGTGTAGGGAATGgagtgccatttcagacgcatTCTACCCATAACTGTACTCACCAGCTGAGCTGTAAGCGGAGTGAAAGCTATGAATAATATCTATTTGGACATAGCCTACCTATTTGGATGCAGTGGTCACAAACCCTGGTCCCAGAGAGCTACAAAGTGTACAGGCTTCTGTTCCATccctgcactaacacacctgattcttcCAAACAAGGCCTCcatgagttgaatgaggtgtaGCGCTAAACTGGGACAAAATCCTGCACGTAATGTCACTCTCCAGGACCTGGACTGAAGAACACTGAAatatataatgttttttttttttttatatctacGTAAATTAATTACACTATCATAATGAGTTAACTGTATGGTAGTGGGTACCATATCATCCTGAGTTAAAGCATAGTGGTTCTGCCTTGACCTGAGGGTCTAGCTACAGTAACAGTTACAGTAGCAACTACATGAATTGTAACTTATACCCACCCTCCTTTTGAGAATTTATTACCAACCCTTTTATGCAATCATTTTACTTGTGTGATATGATTTGTATTTTTATAATGCATATTATGGTTGACTATTAATGTTTAATTGCTGAGTATATTGTTTTACTCAGTTCCAGATGCCAAGCCCATCCAGTAGCAAGCCAAGTTGTGACAAATGATACTAATTATTGTCACAGTTCTACTGTAATACCACTCACCCTTTTGGGCTGGCCATGGCTAACGTCTTTTTCCTCAAGTGAAACGTATACATAGAGTAATATATTCTTACCAAGAGAAGAGAAAAATGGGTAAATAATATATATTGATTCATAATATATTGATCAGAGTCTTTTCAATGTACTTATTGAATGTTGAATGTGTAGTAACGAGTCTCTGTTTGAGACACGCTGTTATACTGTGCCGTGTTATGTACAGTTCTAACTTGGAAGCGAATGCTTCATGGTGTtaacattacagtactgtatggattgggtgggtgggtgcaAGAGGTCACAGCATTTTTTTTGTTCCTGTATGGTATatccacagatagaacaatgagacagatatttcactggatgtataaatATGAAGCATCCACTTGGTGTTTCCattcactaccaaatatggtagtgagagaaAGCCCACTGGCGCGCAGTGGTAGAAAATGGAACGAGATGGATTATGGCCTACATTCTGCAAAtgttctcatcgatgaaacatttgatctcaatacagttttctgttcacAAAACTATAACCTGTTATGAATAGAGttgactaagttttgtagactttagcCATTGTCAAAGTTTTTTAAAATCGCGTTGTTTAGAAGGAATGCAAAGTCATATTGGTTATCGCACAGGCGAatttcacagagtaggcgttccctaacagaAATATGCAGATGTTTGCTAGaacgctagctcgtgcttggctctgcccacctccttgcttgttctgcccactatgactcataTGTTCCCATCtgaaacgacaggctgtggtctatcttggtttattTATAAAAAATCTTTGGTATATCACTACTGGTCTCCATTCGGGCTCAACCATACAGTAACTCAGGTTCCCAGCTCAGATTGCCTCCTGCCACAGATGGTTGTTCAGCATTGTTCTAAGATGGAAACTTGAGGGAACCTTCCCATTCCATTCACACACATTCATATCATTCTAGAGGCCTTTGTTGTCAAAATGGCACCACATGTAACATAATCCTTGACATTATGTTACAAATGGTGCCATTTTGGGGGTTGTTTTAGTTTTAACTTCATGAGGAAAACAACAATTTTGAAACcattacacattttttttttatcaatctcATCTGGGTTTTCAGGGTCTTGATCATAAAGTGTATTTTGCCACAATCTTCAATTGCTATGTGTTGTAGTcatggtaacatatgtaagaccATTCTGAATCTGCACAAATATCTGCCCTGACGATTGTAGTCAAATCTATAACAAGAAAATATGGCTTTATTTAGCATCGGTGGAATAGAAAATGAAACGCATTACTTTGCTTTTAGAGCCTTTGTGTTGTCGGTAACAGTATACTGACTGTTTTGACTCTGCTTTTACATAGTGTTGTATATACAACATGTACTGTAAGGTATGGGAGGCCTCAGTCTCCTCCTCACCATATACTGTCTAAAATATCATAATCTCACCATCAAAATTAAATGGATGTCATTACAAATCCCTAGaggaatgcactgtgtttcttaCGTTATTATAACCTCTAAATCTAAGGTGGTATTACACCAAGAACCAATAAATAACCACTGTCCTTTATTTTCAATTTGAAAGTTTTTCCAATTGTAGGAaaatgtgttgtttgtgtgtgtgtgtgtgtatttccctccctcctactcccctTTCATGAGGTCAGGGATATAATCACTGTAGCTGTCCCATCTGGAAATCTGAAAGTGAAAGAAACAATTCATTCATTTTTATAGTTACAGCACCATTATTTTGAGGTGGTTTATGCATTCAAACAAGAGAATGTTACCTGGGGTTCATTCAGTCTGAACTGAATAATGGCTCTGACTATATTTACAAGATAATGTTAGTGAATAGTAGCTGTGGtggccatatacagtgccttcagaaagtattcacacccattgaccttttccacattttgttacaaagtAGCTTAAAATGGAGTTAAATGTCATATTTGTCAACGATTTCCataaaatactctaatgtcaaagtggaagaaaaattctaacgtttataaaaaacaaaacaaaaaaaacacactaatATCTCTTGATTAGATACAGTGTAAGTGTTCAACCCtcagagtcaatacatgttagaatcacctttggcagcaattacagctgtgagcctttctgggtaagtctaagagctttccacacctggattgtgcaacagttgcccattattattttcaaaattcttcaagcttggttaaattggttgttgatcattgctagacaaccattttcagttcTTACCACAGATTTTCATGaacatttaagtcaaaactgtaactcggccactcaggaacattcactgtcttcttggtggtaactccagtgtagatttggcctagttttaggttattgtccttctgtagttgtcacgtcctgaccacaGAGAGCATTTATTTGCTaaggtggagtaggtcagggcgtgactggggggtgttctagtttattatttctatgtggggttctaggtttaattttctatgttggtgatttgtatgattcccaattagaggcagctggtaatcgttgtctctaattggggatcatatttaagtagtgtttattcccacctgtgtttgtgggatattgtattTTGAGTAAGTGTATGTAGCACCGctgtagtcacggttcgttggtcgtttcttgttttgtttaaagtttcacgtttaataaattatgtggaactcaacatccgctgcgccttggtccgtctctacaAACAACCGTGACAgtaagGTGCATTCTCAGACCAACCAGGAGGTGACCGGCCGCAGTGTCCAGCTCCAGCCCAGCAGTAATGGCTCCCCCTACCATTGGTGCTGCTTCTCCCAACCCTCAGGTCAGAGAGAACCCCCCTCCCAGGCAGGGCAGGACTCGCCGGGCCCGTGGAGGAGGAGGCCACAGCCGCCGCAGCCTCCTCCGCTTCAGTGTCATGCTAATGACGCCTGGAACGCATTGCCGTGGCAGCGGAGGGGTACACCACCACCAATACTCGCTCCACCAACGCAAATGCTCCCTTTATTgggtcctcctccactcctcctgcTTCCAGCACCCCAGCCACTGCTAGCAGTGCGCACTCTAACCCAGCCAATCGACCCAGGgcactctcctcctccaccaccaccaccacccagatcCGCAGTCGTACTCGCACAACCGGCACCCGTCGATCTCTCATCCGAGCCCGGACCAACCGCAGAATGGGCCTGTCTCGTATCATTGAGACCCATCTGTCCAGACGAGGCTCCCTCCGTGAGAGGGACAGATGAGAGCACTAAGGAATGAGAGACTCAGATGGGGTTTCTGTTTTCTATGTTGCCTACCTTGTTTTTGGTGACCTGTTCCTTGGTTTGTTTTAATAAATGCCACCTATGAATGTAGATGGGTTTTGTTGACCTGCTAGCATTGCTGGCTGCATGTTCAGTATTATCTGTGCCCAGTGAcgtttattttttgtgaaatgTACAGATTCATTACCCTTACAGTACATTTAATTTTCATGTGGGTTCAAAGAGCTTCTACTCCATTTCCTTTTCCTGGTGATATTTGAATTGATGGTGTTTTTATATTGTTAGCTAAAATCATTGTTTCCCTTAGCCTAATTAGTAATTGCAGACTATTCCTCAATGGTTAATGATGTATCATTGTTTGGTCCAGTGAAAGCACTGACTCTGTATTTGCAGTAATAATATGTACTTCTAAGGCATTGGTTGTTATTAGATGCTGTGGCACCGGTTCTTTACAAATTACATTAGTGCTACTGTGCAAGCCAAGCACTGTCCCTCTAATAGTAATGGAGTTTAATGCAGTGCTCTAAGACTCTGACTCCTCGCTCATGTAGAAACTGCTCTGCCTTCTCATCAGGTTTGGTACCCATCATCTAACTATACCTATAAGGATGGTAACAATCGCTAATGGACAACATCACGTGATTATTTACTGAGCAATAACATTGCAAGAGATTGGGGAAGGTACCACACTGAGAAAGGATGGGCGAGAGCTTTTGTTTGGTGTAATTTTTCTAGCTTAATTTGTTATGCATCTGTCAATGTCAAAATGGGTGTCAATATGATTTATAAACCAAAGAATTTGTATATTTACTACTATTGCATATCATATACTTGATTACTTTTGTTATACGTTTACTTGTTCGTTTCTTTGTTCCTGACTTCAAATAAAGATTTGAATGGA
>XR_002473830.2
TCGACAGTTTAGATCAGACAGGGGCGTGTCTTGTGGTTCTTGAATGGGAATTTTAACCCGTTCACTCAATCAATTTATATCCAAAAACGTGTAACAAGTGCCATCCCACGGTTTAGTTAGTAATGGTGATTTCGTTGAGTGTATCATGATTTAGAGATGCAGACACATGTATTAAGTTCGATTCACTAACAATTACAGCCGAGTACGAATAGCCACAGCGTAAGTTAGCTAACTAACTCAGTTGTTCCATCCTTCAAAGCATCATTCGTTCCATCGAGAGCAGCCGAGTGCATTCTCAGACCAACCAGGAGGTGACCGGCCGCAGTGTCCAGCTCCAGCCCAGCAGTAATGGCTCCCCCTACCATTGGTGCTGCTTCTCCCAACCCTCAGGTCAGAGAGAACCCCCCTCCCAGGCAGGGCAGGACTCGCCGGGCCCGTGGAGGAGGAGGCCACAGCCGCCGCAGCCTCCTCCGCTTCAGTGTCATGCTAATGACGCCTGGAACGCATTGCCGTGGCAGCGGAGGGGTACACCACCACCAATACTCGCTCCACCAACGCAAATGCTCCCTTTATTgggtcctcctccactcctcctgcTTCCAGCACCCCAGCCACTGCTAGCAGTGCGCACTCTAACCCAGCCAATCGACCCAGGgcactctcctcctccaccaccaccaccacccagatcCGCAGTCGTACTCGCACAACCGGCACCCGTCGATCTCTCATCCGAGCCCGGACCAACCGCAGAATGGGCCTGTCTCGTATCATTGAGACCCATCTGTCCAGACGAGGCTCCCTCCGTGAGAGGGACAGATGAGAGCACTAAGGAATGAGAGACTCAGATGGGGTTTCTGTTTTCTATGTTGCCTACCTTGTTTTTGGTGACCTGTTCCTTGGTTTGTTTTAATAAATGCCACCTATGAATGTAGATGGGTTTTGTTGACCTGCTAGCATTGCTGGCTGCATGTTCAGTATTATCTGTGCCCAGTGAcgtttattttttgtgaaatgTACAGATTCATTACCCTTACAGTACATTTAATTTTCATGTGGGTTCAAAGAGCTTCTACTCCATTTCCTTTTCCTGGTGATATTTGAATTGATGGTGTTTTTATATTGTTAGCTAAAATCATTGTTTCCCTTAGCCTAATTAGTAATTGCAGACTATTCCTCAATGGTTAATGATGTATCATTGTTTGGTCCAGTGAAAGCACTGACTCTGTATTTGCAGTAATAATATGTACTTCTAAGGCATTGGTTGTTATTAGATGCTGTGGCACCGGTTCTTTACAAATTACATTAGTGCTACTGTGCAAGCCAAGCACTGTCCCTCTAATAGTAATGGAGTTTAATGCAGTGCTCTAAGACTCTGACTCCTCGCTCATGTAGAAACTGCTCTGCCTTCTCATCAGGTTTGGTACCCATCATCTAACTATACCTATAAGGATGGTAACAATCGCTAATGGACAACATCACGTGATTATTTACTGAGCAATAACATTGCAAGAGATTGGGGAAGGTACCACACTGAGAAAGGATGGGCGAGAGCTTTTGTTTGGTGTAATTTTTCTAGCTTAATTTGTTATGCATCTGTCAATGTCAAAATGGGTGTCAATATGATTTATAAACCAAAGAATTTGTATATTTACTACTATTGCATATCATATACTTGATTACTTTTGTTATACGTTTACTTGTTCGTTTCTTTGTTCCTGACTTCAAATAAAGATTTGAATGGA
>TU565792
TGGTATatccacagatagaacaatgagacagatatttcactggatgtataaatATGAAGCATCCACTTGGTGTTTCCattcactaccaaatatggtagtgagagaaAGCCCACTGGCGCGCAGTGGTAGAAAATGGAACGAGATGGATTATGGCCTACATTCTGCAAAtgttctcatcgatgaaacatttgatctcaatacagttttctgttcacAAAACTATAACCTGTTATGAATAGAGttgactaagttttgtagactttagcCATTGTCAAAGTTTTTTAAAATCGCGTTGTTTAGAAGGAATGCAAAGTCATATTGGTTATCGCACAGGCGAatttcacagagtaggcgttccctaacagaAATATGCAGATGTTTGCTAGaacgctagctcgtgcttggctctgcccacctccttgcttgttctgcccactatgactcataTGTTCCCATCtgaaacgacaggctgtggtctatcttggtttattTATAAAAAATCTTTGGTATATCACTACTGGTCTCCATTCGGGCTCAACCATACAGTAACTCAGGTTCCCAGCTCAGATTGCCTCCTGCCACAGATGGTTGTTCAGCATTGTTCTAAGATGGAAACTTGAGGGAACCTTCCCATTCCATTCACACACATTCATATCATTCTAGAGGCCATTTTGGGGGTTGTTTTAGTTTTAACTTCATGAGGAAAACAACAATTTTGAAACcattacacattttttttttatcaatctcATCTGGGTTTTCAGGGTCTTGATCATAAAGTGTATTTTGCCACAATCTTCAATTGCTATGTGTTGTAGTcatggtaacatatgtaagaccATTCTGAATCTGCACAAATATCTGCCCTGACGATTGTAGTCAAATCTATAACAAGAAAATATGGCTTTATTTAGCATCGGTGGAATAGAAAATGAAACGCATTACTTTGCTTTTAGAGCCTTTGTGTTGTCGGTAACAGTATACTGACTGTTTTGACTCTGCTTTTACATAGTGTTGTATATACAACATGTACTGTAAGGTATGGGAGGCCTCAGTCTCCTCCTCACCATATACTGTCTAAAATATCATAATCTCACCATCAAAATTAAATGGATGTCATTACAAATCCCTAGaggaatgcactgtgtttcttaCGTTATTATAAC

Function

symbol description
slc25a1 Enables citrate secondary active transmembrane transporter activity. Predicted to be involved in mitochondrial citrate transmembrane transport. Located in extracellular exosome and nucleus. Implicated in 2-hydroxyglutaric aciduria; combined D-2- and L-2-hydroxyglutaric aciduria; and congenital myasthenic syndrome.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606258.2 False 6339 mRNA 0.43 11 33515250 33568701
XR_002473830.2 False 1745 mRNA 0.45 3 33564700 33568701
TU565792 True 1166 lncRNA 0.38 2 33544369 33545595

Neighbor

gene id symbol gene type direction distance location
LOC110525817 LOC106585059 coding upstream 6979 33465992 ~ 33508271 (+)
LOC110525816 LOC106585060 coding upstream 50474 33447246 ~ 33465055 (+)
LOC110525815 LOC106585058 coding upstream 75579 33420413 ~ 33439671 (+)
LOC110525814 LOC106585056 coding upstream 147815 33352672 ~ 33367435 (+)
LOC110525811 rpl6 coding upstream 183653 33327503 ~ 33331597 (+)
LOC110525821 LOC106585065 coding downstream 31983 33600684 ~ 33691211 (+)
LOC110525823 LOC106585068 coding downstream 160395 33729096 ~ 33750556 (+)
LOC110525824 LOC106585069 coding downstream 187403 33756104 ~ 33766480 (+)
fahd2a LOC106585073 coding downstream 401702 33970403 ~ 33973787 (+)
LOC110525024 NA coding downstream 708524 34277225 ~ 34278881 (+)
G498010 NA non-coding upstream 1796 33513230 ~ 33513454 (+)
G497958 NA non-coding upstream 113725 33401208 ~ 33401525 (+)
G497948 NA non-coding upstream 126831 33388179 ~ 33388419 (+)
G497946 NA non-coding upstream 128618 33385727 ~ 33386632 (+)
G497945 NA non-coding upstream 129872 33385161 ~ 33385378 (+)
G498174 NA non-coding downstream 209517 33778218 ~ 33779928 (+)
G498191 NA non-coding downstream 242242 33810943 ~ 33887959 (+)
G498249 LOC106584951 non-coding downstream 319315 33888016 ~ 33905923 (+)
G498275 NA non-coding downstream 359478 33928179 ~ 33928412 (+)
c6h22orf39 cssa24h22orf39 other upstream 194902 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 350989 33135282 ~ 33165186 (+)
polk polk other upstream 586399 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 2202513 31294946 ~ 31312737 (+)
G499111 NA other downstream 582439 34151140 ~ 34151737 (+)
fancc fancc other downstream 5701258 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 6105311 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 6166083 39734703 ~ 39750180 (+)
G505988 NA other downstream 6393951 39962652 ~ 39963098 (+)
G498018 NA non-coding upstream 21759 33522321 ~ 33522610 (+)

Expression


Co-expression Network