LOC110525821 (LOC106585065)


Basic Information

Item Value
gene id LOC110525821
gene name LOC106585065
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33600684 ~ 33691211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979961.1
TGGCAAGCGACGTTGCTTGTGTCACCATGGTGATGGGGCTGTACTCGGGGAGGTTGTGATGGGTTGACAGGTGCGTGACAATCGGAGCTCTCTGCAAGCATGTACGCCAAAGGCAAGAGTAACAACGTGCCGTCCGACAGCCAAGCCAGAGAAAAGTTAGCTCTCTATGTGTATGAGTACCTGCTGCACGTAGGGGCACAGAAGTCAGCACAGACCTTCCTCTCagagATCCGATGGGAGAAGAACATCACATTAGGAGAGCCCCCAGGGTTCCTCCACTCTTGGTGGTGTGTGTTCTGGGACCTGTACTGTGCagccccagagaggagagaaacatgtgAGCACTCCAGTGAGGCCAAGGCCTTCCATGACTATaGTGCAGCAGCAGCACCCAGTCCCATCCTTGGGAACCTTCCCACAGGAGAGGGAATGCCAGTGGGTCCTGTACCTCCAGGATTCTTCCAGTCGTTCATGTCACCTCGTTATCCTGGTGGGCCCAGACCGCCCCTCAGAATACCTAATCAGGCAATGGGGGTCCATGGTAACCAGCCTATGCTACCCAGCGGAATGGACCCCACAAGACAGCAAGGGCATCCAAATATGGGCGGGCCCATGCAGCGAATGACTCCACCCAGAGGGATGGTCCCTCTTGCGCCACAGAACTACGGTGGAGGGATGAGACCTCCTCTAAATGCACTCGTTGGCCCTGGGATGCCTGGCATGAACATgggaCCTGGTGGGGGTAGACCTTGGCCAAATCCTCAAAACGCCAACTCAATCCCCTACTCCTCTGCGTCTCCAGGAAGTTATGTGGGTCCGCCGGGAGGAGGGGGGCCACCTGGTACTCCAATAATGCCCAGCCCAGCAGACTCGACTAACTCCGGTGACAACATATACACCATGATCAACACAGTCCCCCCTGGTGGAAACAGACCAAATTTTCCAATGGGTGCCGGTGCAGACGGTCCAATGGGAGGGATGGCAGGAATGGAGCCACATCACATGAATGGATCGCTAGGGTCTGGTGACATGGATAGCCTCCCTAAGAACTCTCCTGGTAACCTGAGCATGAGTAACCAGCCGGGGACCCCCAGAGATGACGGCGAGATGGGGGGCAACTTCCTCAACCCCTTTCAGAACGAGAGCtattctccaaacatgacgatgAGTGTGTGAAGGCTCCGCCAGCTGGCCAGTTAGTGGTGTGGATTGGTGGAAGAGACGTGATGTCATCTATGCCCAGTGGTTCTTCCTCTCTATGCCCTCTCTACCAGGACAGTGGACCCAGGCCTCGTTCTCCCCCTGGCCTCTATCTGTGTTTGTTCTCTTCTTCTGTTTCCTCTCACTTTTACACTTGTGACCTTCTGCTTCGTTCATCACCTACCATCAGAGACTGTATGAAAGGAACCTCCATTCTAACAAACCAGGAAATAAAAATCTCTGTATATTTATAAATGTATGTCACTGTGCATACTCTCAGTCATGCTAACACAGAAAGATGTACCATGCTCCACCATCTTGTGGAAAAGACACTGAAAACCCTCAAGTGTAAAGAAATCTGAGCAGGTAGCTTTCTGGCTCCCCACCTGCATTCGTTATGAGTCTTTAGATTTGATGGGCATGATGGCAACCACAGTCTATGATTGGATGAATTGAGATGACAACTTCAGTCTCATTGGATATACAACAACCTGGAATAAAGCCTATTTAATGGTATCCTCCGTCTCTCATTGGATGAAGATTATGACAACCACAGTCTTTGATTGGAGAGGGGCGACAGCTTCAGTGATTTGAGATCTTTGTCCCACAGTGAACATTcaccaatgtttttttgtttttttcacctCCATACACTTGAATCTGATGTGCTATGTTGAGAGAAATCATTCAGTACAGTATGGGCCATGTTTTCAATGTTGTTttttattggttggttgattttgTTTGGCATGGTGACTGGTTTGAGAATATACACCTGCTTGTTGAGCTGTACACTGTGTAAGTGTACTGGCTAGAGAGTACTATAAGGCCACATCTTATCATTTACTGGGAGCAATGTTCATCCTTATATCTATGTCTTGACTACGAGCATCAACACCTAAAAACAAAGAGATTTGCCAATCTTAACGATGACACATctgagatggagagaacagagaaaatgCAAGCAGTTGGTTGTCTGAAAGAACTATTTTCTGCCTTGTCAAAAGGATGCAATGTGTTATGATTTTTCAAAGAATGCAAGACTGTAGATTGAACGAAAAAGGAAACTAAAAGTGCAGCAATTGGTGACAATGGTTGTAGGGATTTTTGTGTGAAGGTATTATTAAAAACATGCATTTAAATCATTCTCTTAATTAATTTATTATTGTCATCCGGAAAAACTGTGATCTTAATGTATTTTGGAGAGTATGTGTAGAGGTAAAATAGCtgtgttttgtattattttaaACCTACTCCTCAGCCCATGTTAGTTTATTACGATAATATTTAGTCCATGACGTTATTATTTAGTCTAGGATTTTACTATTCCCTCCCGTAGATCTAAAACTCATAAATCTAACTCCTCTTCTTTATGTATCTAACACATGGAgggatggacagaaagagagaacgaaagagagaggggaaagatgaACTAGGGGACACCAATACAGAGCTGTTTGTTTTAATGTTAGTTTAAAGTCACAAGTATGAATAATGAAAGATgcatattttttttctttttaaatttGACAATTTACACATTTTTGGATTCCAAATGTTGGTTGTTTGTTTCCATTTGTGATGTGTTCATTTTCTTCCTTTTTCTGTTATTCTTTTATTTTTACCTCTTTATGTTTTGTAAATACACTGAGAAGTACTACATGGGTTTTGAATATGCTGGTATAAAGCTTCTCTTCCCTCATTAA

Function

NR:

description
single-stranded DNA-binding protein 2-like

GO:

id name namespace
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979961.1 True 2912 mRNA 0.45 17 33600684 33691211

Neighbor

gene id symbol gene type direction distance location
LOC110525819 slc25a1 coding upstream 31983 33515250 ~ 33568701 (+)
LOC110525817 LOC106585059 coding upstream 92413 33465992 ~ 33508271 (+)
LOC110525816 LOC106585060 coding upstream 135908 33447246 ~ 33465055 (+)
LOC110525815 LOC106585058 coding upstream 161013 33420413 ~ 33439671 (+)
LOC110525814 LOC106585056 coding upstream 233249 33352672 ~ 33367435 (+)
LOC110525823 LOC106585068 coding downstream 37885 33729096 ~ 33750556 (+)
LOC110525824 LOC106585069 coding downstream 64893 33756104 ~ 33766480 (+)
fahd2a LOC106585073 coding downstream 279192 33970403 ~ 33973787 (+)
LOC110525024 NA coding downstream 586014 34277225 ~ 34278881 (+)
LOC110525834 LOC106584952 coding downstream 601566 34292777 ~ 34298399 (+)
G498018 NA non-coding upstream 78074 33522321 ~ 33522610 (+)
G498010 NA non-coding upstream 87230 33513230 ~ 33513454 (+)
G497958 NA non-coding upstream 199159 33401208 ~ 33401525 (+)
G497948 NA non-coding upstream 212265 33388179 ~ 33388419 (+)
G498174 NA non-coding downstream 87007 33778218 ~ 33779928 (+)
G498191 NA non-coding downstream 119732 33810943 ~ 33887959 (+)
G498249 LOC106584951 non-coding downstream 196805 33888016 ~ 33905923 (+)
G498275 NA non-coding downstream 236968 33928179 ~ 33928412 (+)
c6h22orf39 cssa24h22orf39 other upstream 280336 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 436423 33135282 ~ 33165186 (+)
polk polk other upstream 671833 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 2287947 31294946 ~ 31312737 (+)
G499111 NA other downstream 459929 34151140 ~ 34151737 (+)
fancc fancc other downstream 5578748 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 5982801 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 6043573 39734703 ~ 39750180 (+)
G505988 NA other downstream 6271441 39962652 ~ 39963098 (+)

Expression


Co-expression Network