LOC110525824 (LOC106585069)


Basic Information

Item Value
gene id LOC110525824
gene name LOC106585069
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33756104 ~ 33766480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606264.2
GTTATCGTTTGTGCTGCTGGCAGAATAATAGTCGCTGTAGGCCTATTCAACTCAAGAAAGGGCGGCGGCAACCTAACGGACAAAACAAGCGTCACCAACGTCGCATTGGCACATTAATAACGtgCAGTAATGATGAAGCTCAGCTCTCCTCTGGCCGTGCTGTGCCTTTCTCTCCTGCTGCTCAATGCCCACCTGTCCCTGGccaagagagggggaggaggctTTGGTGGTAAATCCAGCATAGGCTTTGGGAAGAAACCTTCCTCCACCTCCAACCGTGGAGGCAGCAACACCCAACGCAGACCCAACCAAGGGACCAATAACCAGCCAGGGAACTACCCTCGCCAGCCCCAGAGCCCACAGAACCCCCAAGCAGGGTACCCGCAGCAACCAGGAGGTTATCCACAGCAACCAGGGGGGTACCCTCAACAGCCAGGCAGGGCAGGATACCCTAACCAAGGTGGCTACCCTAACCAAGGTGGCTACCCTAACCAAGGTGGCTACCCTAACCAAGGTGGCTACCCTGCTGGAGGATATCCAGCTGGAGGCTACCCAGGGGGCTACCCGGCAGGAGGCTATCCAAACAGATACCCAGCTGGTGGAGGCTATGGTGGAGGCTATGGTGGAGGCTATGGTGGTGGTTATGGAGGGGGCTACATGAACCAAAACCCCAACAACCGGATCCTTAGCCCTGGCTACGGGGGCAGTTACGGCTATGGGGGGTATGGTGGTGCCGGTGGCTCCCCGTTCTCCCGCTCCGTgcaggggatggggatgggaccCTCGCAGCAGTCCAGGGGGTTTGGGCGTAATGCAGCGATGGCGGCCGGGGCTGGGGTTGTGGCTGGGATGGCTCTGGGTTATGGACTGGGCCGGTTTCCCCGGCCTCACTTCGGCTTTCACAACCCCCAGGAGGAGTACTACTATAACCACTACATGTACAGGAGGTACGGCACCAAATCCACTGATGACAATGACTACAGCAGGGACTACCACTTCAGCCCGCCTCCACAGTCCTATGATAACTACATGAAGAACTGTATGAAGAGGACTGACCTGCTGAGAGGTGGGGAGAAGGGTGGATCGGAAACAGGAGCCAGGGAGAACTCACCACCACAGGGAGCTGCAGACAGCCCCAGCACTCAGGTAGTCGTACCCAGTGGAGGAGGCACTGCAGTCGGGGAGAAGAGTGAAGAGCCAGCCCCTGTTCCTGGAGGTTCCACCAATACTACCGACCCCGGTTCCACCCAAGCACCAGGCAGTGGCCCCAGTAACAGCTCTGCCACAGAGGGCAGTTCCAGTGAGAGTAATGTCACAGCTGAGAGTAACGGTACAGCAGCGACTGAGAAGCCTGTGACCCCTGAACCCTTGAACCCAAACCCTCAAACCCCCCCTCATGCAGCCAAGCCCCTCCCTCCAGCCATAGCTGAGcctgaggatgatgatgaggaaaATATAGTGAGCATCTCTGAGATTGGCTACCCAGCGCTGATAGAGCAGATGAAGGCTCGGAGGTGTGTGGAGCTTTACATGGTGTACGCCGAACACTACCTGGAGAAAAAGAAGGAGGACAAGAAGAACACGCCCCGGGAAAGAcccagaggaggagtggagagactgGGAGGAGGAGGATACCAGGGACTGCTAGCTGTTCTCACCTCTACTGCACTACTGCTGCTGAACAGCAACATGCTACTACTGcactgaggcagagagagagcaagaaacagaaagagagggaaatagagggaaGAAGGAGAAAG

Function

NR:

description
prisilkin-39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606264.2 True 1763 mRNA 0.57 2 33756104 33766480

Neighbor

gene id symbol gene type direction distance location
LOC110525823 LOC106585068 coding upstream 6175 33729096 ~ 33750556 (+)
LOC110525821 LOC106585065 coding upstream 64893 33600684 ~ 33691211 (+)
LOC110525819 slc25a1 coding upstream 187403 33515250 ~ 33568701 (+)
LOC110525817 LOC106585059 coding upstream 247833 33465992 ~ 33508271 (+)
LOC110525816 LOC106585060 coding upstream 291328 33447246 ~ 33465055 (+)
fahd2a LOC106585073 coding downstream 203923 33970403 ~ 33973787 (+)
LOC110525024 NA coding downstream 510745 34277225 ~ 34278881 (+)
LOC110525834 LOC106584952 coding downstream 526297 34292777 ~ 34298399 (+)
LOC110525837 LOC106585079 coding downstream 609671 34376151 ~ 34414688 (+)
LOC118964863 NA coding downstream 823063 34589543 ~ 34594418 (+)
G498018 NA non-coding upstream 233494 33522321 ~ 33522610 (+)
G498010 NA non-coding upstream 242650 33513230 ~ 33513454 (+)
G497958 NA non-coding upstream 354579 33401208 ~ 33401525 (+)
G498174 NA non-coding downstream 11738 33778218 ~ 33779928 (+)
G498191 NA non-coding downstream 44463 33810943 ~ 33887959 (+)
G498249 LOC106584951 non-coding downstream 121536 33888016 ~ 33905923 (+)
G498275 NA non-coding downstream 161699 33928179 ~ 33928412 (+)
G498056 LOC106585071 non-coding downstream 181502 33947982 ~ 33950792 (+)
c6h22orf39 cssa24h22orf39 other upstream 435756 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 591843 33135282 ~ 33165186 (+)
polk polk other upstream 827253 32926258 ~ 32936958 (+)
G495920 LOC106584987 other upstream 2443367 31294946 ~ 31312737 (+)
G499111 NA other downstream 384660 34151140 ~ 34151737 (+)
fancc fancc other downstream 5503479 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 5907532 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 5968304 39734703 ~ 39750180 (+)
G505988 NA other downstream 6196172 39962652 ~ 39963098 (+)

Expression


Co-expression Network