LOC110525841 (LOC100195666)


Basic Information

Item Value
gene id LOC110525841
gene name LOC100195666
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 35234568 ~ 35245606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606294.2
TCAGCTGATGCTTGTAAATACGTTTAGTTGCCAGGAAGTAAACTAGTGTGCGTGCCAAGATGGAAAATGAAGGGACAAAACATCTTCAAGCTAAAATAATCGCGCTTTTGAGAGTATAGTGAATCTATTTTCAAGCTAGAAGATTGGAACGTATCAGCTTTGAACATGGATATTCATGAAAGAAGTCAACCATGGGGGAAGTTAGTAAAAGTGGACACTGAATCGGAAGTATTGCTTGTCAACAGGGAATGCACTGTCGGGCGAAGAAAAGGCTGTGATCTTTCCTTTCCTGCTAGCAAACTGGTCTCGGGGGATCACTGTAAGATAGTCCAGGATGAGAGATCAGGGTTGGTGTGGCTAGAGGACATGAGCACCAATGGTACAGTGATTAACATGTCAAAGCTGGTGAAAAAGCAGGTTCATATGCTGCAGAATGGAGACGTCATCTACTTTGTGTACAGGAAAAACGAGCCAGAGCTAAATATTGCCTACATATATCAGTCCATAAAACCAGAGAGGACATTCTCACAAGACTCAATTTGCGACGCCACCAAATGCTCAGATATGCAGCAGAAAGCCCAACCCTGCACTGTTCCAGCAGCAGTGTCTGTGGAGCCATTCCTGGTAGGACCTCCATGGGAACAGCAGGCCTTAGAGGAGCCccagccctccacctcctcccaccTCTTCCACACATTCTCCCCCTCCACAGCATGTTCCTCTGCAACCTCCCTCCTGCACTCCTCTGCCTCAGGTTCCGAGGGTCCTAAATGTGCTGCATCCTCTGTAGGCAAGGCTGAGGAGCCCAACTCTAACCTCCTCTGCTCAACAGACGTGCGACAGACTGAAGCCCAGAGCAGAGTCCCAATGCTGGAAGAGGGGGACatggagccagagagaaagaggaggaaaactGACGGTGCTGATAAGAACTATGATTTTGGACTGCCACATACTTCCAGTATTGAGGTGGTGGGCCCGGGCCCAGCTAAGGGAACTCTTATCACGGATCTATTGGGAAAAGCTGCCGTGACTGTGGAAGGAGCCACGACTGACAAAATGGAGGAGTCCCTCACCTGTATCATCTGTCAGGACCTACTTCATGACTGTGTCAGCCTGCAGCCCTGTATGCACACCTTCTGTGCTGCGTGTTACTCTGGCTGGATGGAGCGCTCGTCTCTCTGCCCTACCTGTCGCTGCCCCGTAGAGAGGATCCGCAAGAACCACATCCTCAACAACCTGGTGGAGGCCTACCTTATCCAGAAACCAGAGAAGTGTCGCAGTGAGGAGGACCTGAAGAGCATGGACAGCCACAACAAGATAACTCGGGACATGCTGCAGCCAAAGATTGAGCGTTCCTTCTCCGATGAAGAGGGCAGCTCTGATTATCTCTTTGAGCTCTCTGACAATGACAGCGACGCCTCCGATATCAGCCAGCCCTTTGTGATGTGCAGACAGTGTCCAGGCTACAGGAAGGAGATTAGCCAGGTACTGTGGGCCATAGGGCCAGCTCCTCTAGGACCAGCCCCACCAACTCCTGAGGACAGGGCTGGGAAACCCCTTGGAGAGAGGCCATCAACATCATCAACACGCTCTGACTTCTCCACTACAGCACCTCGAGAGTACACGTGTCCTCCTCAGGGCAGCCATGTCATCTGCACCTGCTGCCTGCAGCCCATGCCAGACCGCCGCACCGAACTCTCCTCTCAGCAATGTGTGGCGTGCCAACGGCCCTTCTGCCACATGTACTGGGGCTGCCAGAGGATCGGCTGTCAAGGCTGCCTAGCACGTTTCAATGAACTCAACCTTACAGACAAATGTCTGGACGGTGTTCTGAACAGCAATAACTATGAATCAGAGATCCTCCAGAATTACTTGTCAGCCAGAGGGATGTCGTGGAGGGACATGCTACAGGAGGGTCTTCGGGGCCTGCAACAGGGAACCTTCTATCTCTCTGATTATCGCATCAACAGTAATGCCATAATGTGTTTCTGCTGTGGCCTGCGTGCCTTCAAGGAGCTGGCCTACAAATATAGACAAAACATTCCTGGCTCGGAGCTCCCAGTTGCTGTGACGTCTCGGCCTGACTGTTATTGGGGACGCAACTGCCGGACTCAAGTAAAGGCACACCACGCCACGAAATTCAACCACATATGTGAGCAGACGCGTTTCAAGAACTGAAGAGCCTTGTGGGTGACCTGCTATGCAAGGCTCCTCTCCAATCACTGGAGCAAAGACTGACTTCCAAGGATCTCCTGTattactctctgtctctatacaaaGTGGTCCTATTTTTCCTCCCTCCCTTATTAAGCAGCTCTTTGCCCTGAGGAAAAGTGTCTCTCTCTTAGGTAATAACTTGTAGTTCTCTAACAGGTTCTATAGTCTTTGTATTTGATTATATGCAGGAATTAGAATCAAACTCTTTTGATAAGACTGGCTAGGTAATGATTAGCCCAGTCTTATAGGAATAGTAGGGTGGGATAGTACTATGCACTCCACACAGTAGGACCGGATTCCCCTATATGATGATGGACTAATATCTTATGGGGAATATGATCAGCACCCTTCATTGCAGTATCATGTTCTTTTGGGTACATGATCATATGACTAGTTTGAGGGataattttgttttttttaaatacactgagaacaattaaaaataagaatttgttcttaactgacttgcctagttaaataaatgtgtaCTGTTACACACTGGATGAAATGGCATCTTTTGTGACCGTAGCTTAGAAGGCATAAATATATTGATATTAGTAAGCCGTTGACACTTTTTCTAATTCCGTGTGCCTGAGTAGTTGG
>XM_021606295.2
TCAGCTGATGCTTGTAAATACGTTTAGTTGCCAGGAAGTAAACTAGTGTGCGTGCCAAGATGGAAAATGAAGGGACAAAACATCTTCAAGCTAAAATAATCGCGCTTTTGAGAGTATAGTGAATCTATTTTCAAGCTAGAAGATTGGAACGTATCAGCTTTGAACATGGATATTCATGAAAGAAGTCAACCATGGGGGAAGTTAGTAAAAGTGGACACTGAATCGGAAGTATTGCTTGTCAACAGGGAATGCACTGTCGGGCGAAGAAAAGGCTGTGATCTTTCCTTTCCTGCTAGCAAACTGGTCTCGGGGGATCACTGTAAGATAGTCCAGGATGAGAGATCAGGGTTGGTGTGGCTAGAGGACATGAGCACCAATGGTACAGTGATTAACATGTCAAAGCTGGTGAAAAAGCAGGTTCATATGCTGCAGAATGGAGACGTCATCTACTTTGTGTACAGGAAAAACGAGCCAGAGCTAAATATTGCCTACATATATCAGTCCATAAAACCAGAGAGGACATTCTCACAAGACTCAATTTGCGACGCCACCAAATGCTCAGATATGCAGCAGAAAGCCCAACCCTGCACTGTTCCAGCAGCAGTGTCTGTGGAGCCATTCCTGGTAGGACCTCCATGGGAACAGCAGGCCTTAGAGGAGCCccagccctccacctcctcccaccTCTTCCACACATTCTCCCCCTCCACAGCATGTTCCTCTGCAACCTCCCTCCTGCACTCCTCTGCCTCAGGCAAGGCTGAGGAGCCCAACTCTAACCTCCTCTGCTCAACAGACGTGCGACAGACTGAAGCCCAGAGCAGAGTCCCAATGCTGGAAGAGGGGGACatggagccagagagaaagaggaggaaaactGACGGTGCTGATAAGAACTATGATTTTGGACTGCCACATACTTCCAGTATTGAGGTGGTGGGCCCGGGCCCAGCTAAGGGAACTCTTATCACGGATCTATTGGGAAAAGCTGCCGTGACTGTGGAAGGAGCCACGACTGACAAAATGGAGGAGTCCCTCACCTGTATCATCTGTCAGGACCTACTTCATGACTGTGTCAGCCTGCAGCCCTGTATGCACACCTTCTGTGCTGCGTGTTACTCTGGCTGGATGGAGCGCTCGTCTCTCTGCCCTACCTGTCGCTGCCCCGTAGAGAGGATCCGCAAGAACCACATCCTCAACAACCTGGTGGAGGCCTACCTTATCCAGAAACCAGAGAAGTGTCGCAGTGAGGAGGACCTGAAGAGCATGGACAGCCACAACAAGATAACTCGGGACATGCTGCAGCCAAAGATTGAGCGTTCCTTCTCCGATGAAGAGGGCAGCTCTGATTATCTCTTTGAGCTCTCTGACAATGACAGCGACGCCTCCGATATCAGCCAGCCCTTTGTGATGTGCAGACAGTGTCCAGGCTACAGGAAGGAGATTAGCCAGGTACTGTGGGCCATAGGGCCAGCTCCTCTAGGACCAGCCCCACCAACTCCTGAGGACAGGGCTGGGAAACCCCTTGGAGAGAGGCCATCAACATCATCAACACGCTCTGACTTCTCCACTACAGCACCTCGAGAGTACACGTGTCCTCCTCAGGGCAGCCATGTCATCTGCACCTGCTGCCTGCAGCCCATGCCAGACCGCCGCACCGAACTCTCCTCTCAGCAATGTGTGGCGTGCCAACGGCCCTTCTGCCACATGTACTGGGGCTGCCAGAGGATCGGCTGTCAAGGCTGCCTAGCACGTTTCAATGAACTCAACCTTACAGACAAATGTCTGGACGGTGTTCTGAACAGCAATAACTATGAATCAGAGATCCTCCAGAATTACTTGTCAGCCAGAGGGATGTCGTGGAGGGACATGCTACAGGAGGGTCTTCGGGGCCTGCAACAGGGAACCTTCTATCTCTCTGATTATCGCATCAACAGTAATGCCATAATGTGTTTCTGCTGTGGCCTGCGTGCCTTCAAGGAGCTGGCCTACAAATATAGACAAAACATTCCTGGCTCGGAGCTCCCAGTTGCTGTGACGTCTCGGCCTGACTGTTATTGGGGACGCAACTGCCGGACTCAAGTAAAGGCACACCACGCCACGAAATTCAACCACATATGTGAGCAGACGCGTTTCAAGAACTGAAGAGCCTTGTGGGTGACCTGCTATGCAAGGCTCCTCTCCAATCACTGGAGCAAAGACTGACTTCCAAGGATCTCCTGTattactctctgtctctatacaaaGTGGTCCTATTTTTCCTCCCTCCCTTATTAAGCAGCTCTTTGCCCTGAGGAAAAGTGTCTCTCTCTTAGGTAATAACTTGTAGTTCTCTAACAGGTTCTATAGTCTTTGTATTTGATTATATGCAGGAATTAGAATCAAACTCTTTTGATAAGACTGGCTAGGTAATGATTAGCCCAGTCTTATAGGAATAGTAGGGTGGGATAGTACTATGCACTCCACACAGTAGGACCGGATTCCCCTATATGATGATGGACTAATATCTTATGGGGAATATGATCAGCACCCTTCATTGCAGTATCATGTTCTTTTGGGTACATGATCATATGACTAGTTTGAGGGataattttgttttttttaaatacactgagaacaattaaaaataagaatttgttcttaactgacttgcctagttaaataaatgtgtaCTGTTACACACTGGATGAAATGGCATCTTTTGTGACCGTAGCTTAGAAGGCATAAATATATTGATATTAGTAAGCCGTTGACACTTTTTCTAATTCCGTGTGCCTGAGTAGTTGG
>XM_021606296.2
TCAGCTGATGCTTGTAAATACGTTTAGTTGCCAGGAAGTAAACTAGTGTGCGTGCCAAGATGGAAAATGAAGGGACAAAACATCTTCAAGCTAAAATAATCGCGCTTTTGAGAGTATAGTGAATCTATTTTCAAGCTAGAAGATTGGAACGTATCAGCTTTGAACATGGATATTCATGAAAGAAGTCAACCATGGGGGAAGTTAGTAAAAGTGGACACTGAATCGGAAGTATTGCTTGTCAACAGGGAATGCACTGTCGGGCGAAGAAAAGGCTGTGATCTTTCCTTTCCTGCTAGCAAACTGGTCTCGGGGGATCACTGTAAGATAGTCCAGGATGAGAGATCAGGGTTGGTGTGGCTAGAGGACATGAGCACCAATGGTACAGTGATTAACATGTCAAAGCTGGTGAAAAAGCAGGTTCATATGCTGCAGAATGGAGACGTCATCTACTTTGTGTACAGGAAAAACGAGCCAGAGCTAAATATTGCCTACATATATCAGTCCATAAAACCAGAGAGGACATTCTCACAAGACTCAATTTGCGACGCCACCAAATGCTCAGATATGCAGCAGAAAGCCCAACCCTGCACTGTTCCAGCAGCAGTGTCTGTGGAGCCATTCCTGGTAGGACCTCCATGGGAACAGCAGGCCTTAGAGGAGCCccagccctccacctcctcccaccTCTTCCACACATTCTCCCCCTCCACAGCATGTTCCTCTGCAACCTCCCTCCTGCACTCCTCTGCCTCAGACGTGCGACAGACTGAAGCCCAGAGCAGAGTCCCAATGCTGGAAGAGGGGGACatggagccagagagaaagaggaggaaaactGACGGTGCTGATAAGAACTATGATTTTGGACTGCCACATACTTCCAGTATTGAGGTGGTGGGCCCGGGCCCAGCTAAGGGAACTCTTATCACGGATCTATTGGGAAAAGCTGCCGTGACTGTGGAAGGAGCCACGACTGACAAAATGGAGGAGTCCCTCACCTGTATCATCTGTCAGGACCTACTTCATGACTGTGTCAGCCTGCAGCCCTGTATGCACACCTTCTGTGCTGCGTGTTACTCTGGCTGGATGGAGCGCTCGTCTCTCTGCCCTACCTGTCGCTGCCCCGTAGAGAGGATCCGCAAGAACCACATCCTCAACAACCTGGTGGAGGCCTACCTTATCCAGAAACCAGAGAAGTGTCGCAGTGAGGAGGACCTGAAGAGCATGGACAGCCACAACAAGATAACTCGGGACATGCTGCAGCCAAAGATTGAGCGTTCCTTCTCCGATGAAGAGGGCAGCTCTGATTATCTCTTTGAGCTCTCTGACAATGACAGCGACGCCTCCGATATCAGCCAGCCCTTTGTGATGTGCAGACAGTGTCCAGGCTACAGGAAGGAGATTAGCCAGGTACTGTGGGCCATAGGGCCAGCTCCTCTAGGACCAGCCCCACCAACTCCTGAGGACAGGGCTGGGAAACCCCTTGGAGAGAGGCCATCAACATCATCAACACGCTCTGACTTCTCCACTACAGCACCTCGAGAGTACACGTGTCCTCCTCAGGGCAGCCATGTCATCTGCACCTGCTGCCTGCAGCCCATGCCAGACCGCCGCACCGAACTCTCCTCTCAGCAATGTGTGGCGTGCCAACGGCCCTTCTGCCACATGTACTGGGGCTGCCAGAGGATCGGCTGTCAAGGCTGCCTAGCACGTTTCAATGAACTCAACCTTACAGACAAATGTCTGGACGGTGTTCTGAACAGCAATAACTATGAATCAGAGATCCTCCAGAATTACTTGTCAGCCAGAGGGATGTCGTGGAGGGACATGCTACAGGAGGGTCTTCGGGGCCTGCAACAGGGAACCTTCTATCTCTCTGATTATCGCATCAACAGTAATGCCATAATGTGTTTCTGCTGTGGCCTGCGTGCCTTCAAGGAGCTGGCCTACAAATATAGACAAAACATTCCTGGCTCGGAGCTCCCAGTTGCTGTGACGTCTCGGCCTGACTGTTATTGGGGACGCAACTGCCGGACTCAAGTAAAGGCACACCACGCCACGAAATTCAACCACATATGTGAGCAGACGCGTTTCAAGAACTGAAGAGCCTTGTGGGTGACCTGCTATGCAAGGCTCCTCTCCAATCACTGGAGCAAAGACTGACTTCCAAGGATCTCCTGTattactctctgtctctatacaaaGTGGTCCTATTTTTCCTCCCTCCCTTATTAAGCAGCTCTTTGCCCTGAGGAAAAGTGTCTCTCTCTTAGGTAATAACTTGTAGTTCTCTAACAGGTTCTATAGTCTTTGTATTTGATTATATGCAGGAATTAGAATCAAACTCTTTTGATAAGACTGGCTAGGTAATGATTAGCCCAGTCTTATAGGAATAGTAGGGTGGGATAGTACTATGCACTCCACACAGTAGGACCGGATTCCCCTATATGATGATGGACTAATATCTTATGGGGAATATGATCAGCACCCTTCATTGCAGTATCATGTTCTTTTGGGTACATGATCATATGACTAGTTTGAGGGataattttgttttttttaaatacactgagaacaattaaaaataagaatttgttcttaactgacttgcctagttaaataaatgtgtaCTGTTACACACTGGATGAAATGGCATCTTTTGTGACCGTAGCTTAGAAGGCATAAATATATTGATATTAGTAAGCCGTTGACACTTTTTCTAATTCCGTGTGCCTGAGTAGTTGG

Function

NR:

description
E3 ubiquitin-protein ligase CHFR isoform X3

GO: NA

KEGG:

id description
K10644 CHFR; E3 ubiquitin-protein ligase CHFR

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606294.2 False 2823 mRNA 0.49 18 35234568 35245606
XM_021606295.2 False 2787 mRNA 0.49 18 35234568 35245606
XM_021606296.2 True 2745 mRNA 0.48 18 35234568 35245606

Neighbor

gene id symbol gene type direction distance location
LOC110525840 LOC106585083 coding upstream 33120 34784985 ~ 35201448 (+)
LOC118964863 NA coding upstream 640150 34589543 ~ 34594418 (+)
LOC110525837 LOC106585079 coding upstream 819880 34376151 ~ 34414688 (+)
LOC110525834 LOC106584952 coding upstream 936169 34292777 ~ 34298399 (+)
LOC110525024 NA coding upstream 955687 34277225 ~ 34278881 (+)
LOC110525843 LOC106585086 coding downstream 41460 35287066 ~ 35306444 (+)
LOC110525846 LOC106585087 coding downstream 61260 35306866 ~ 35318995 (+)
LOC110525848 zdhhc8 coding downstream 89275 35334881 ~ 35415036 (+)
LOC110526892 NA coding downstream 183915 35429521 ~ 35435805 (+)
LOC110525852 arvcf coding downstream 260834 35506440 ~ 35740040 (+)
G500091 NA non-coding upstream 25177 35209129 ~ 35209391 (+)
G500086 NA non-coding upstream 32134 35202232 ~ 35202434 (+)
G500021 NA non-coding upstream 155278 35079079 ~ 35079290 (+)
G499996 NA non-coding upstream 200415 35031110 ~ 35034153 (+)
G500121 NA non-coding downstream 170702 35416308 ~ 35417008 (+)
G500126 NA non-coding downstream 171521 35417127 ~ 35418481 (+)
G500127 NA non-coding downstream 173311 35418917 ~ 35420024 (+)
G500220 ranbp1 non-coding downstream 177775 35423381 ~ 35429369 (+)
G500225 dgcr8 non-coding downstream 195809 35441415 ~ 35442199 (+)
G499111 NA other upstream 1082831 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 1769513 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 1914220 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 2070307 33135282 ~ 33165186 (+)
polk polk other upstream 2305717 32926258 ~ 32936958 (+)
fancc fancc other downstream 4024353 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 4428406 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 4489178 39734703 ~ 39750180 (+)
G505988 NA other downstream 4717046 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 4951194 40196800 ~ 40203886 (+)

Expression


Co-expression Network