LOC110525866 (LOC106585105)


Basic Information

Item Value
gene id LOC110525866
gene name LOC106585105
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 36581096 ~ 36644654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606338.2
ATCTCACAGAAGCTTTTTGGCAAAAAATACAGGAGTTAGTTTACCAATATAATTGCGGTCTGTTCAACACTGTTGCAAGGTAGCAGGTTGGCTAGCCGCTCTTTTCAAATATTTTGTTAACTTATTTTTTTGTGTCAGCCTTTGCAGCTCGAGACCGAGCAGCATAGCTAGCCAGCTTGTTACTACAGTATTTGAATTCGACAAGGCTGTTTTGACGTtggatagctagctacattcacTGGTTCGAAATTTCGAATAGACCAGATATCACATTTTAAAACGGGTTAATTTCTTTGCTGTGTCGTTAGATTCACACGCTAGCAAGAAAGCTATACTTTTCCCCCCCTGTGCGGCAAAGTTTATACGTACTTTGTTTTTGAAAGCTATCCTCTAATAACTAACTAGCTACCGGTTGTCATTTTTACTTTGTCAACAACAAGGCGTGACGTTTGGTTCAACACTAATTCTGCCTGCAAGATTTTTGTTGGTGACTTCCACGAACGTTGGCTAGCATTTACGTTAGCTTGCCATCACTGACAGCGATTGTAACTGCGAGCCAGCATCAGTCAAGCGAATTTGACAAAAACAACTTAGCCAATAAATAAGCTATCAAGCTGATCAGAGCAGTATCACAGCGATAACTGACTTCTGTTATCGATAAATTGCCTTGTGGGAGATAGTATAGATCTTGCTTATTTTAATCATTACCAAAAAAACGTAATTGAACGTGAAGTAGTTAACGTTAACCCACAGAAGTAGTTGTGTATCCAAATTCAGACCCGAATTGTCATATTTTTTTCGGTGCTATTGTTGAAAATGGCGGCGATCGAAATGGTGCAGATGTTGATCGAAGCAGCAGAATACCTTGATCGCAGAGAAAGAGAAGCAGAACATGGCTATGCCTCCATGTTACCGTTCACCAGCAGCAAAGAGAAGGACAGCTTGAAACGGAAAAACAAAAGCAAGAAGAACTCCAATAGCAGATCTACACACAACGAGATGGAGAAAAACAGacGCGCACACCTACGGCTGTGTTTAGAGCGACTGAAATCCCTCGTTCCATTGGGACCAGACTCCAACAGGCATACCACGCTCAGCCTGCTGATGAGGGCCAAGAAACACATTGTGAGGTTGGAGGAGAGCGAGCGGAGAGCCCAGCATACCTTAGACCAGCTGCAGAGAGAGCAGAGGCACCTGCAACGGCGTCTGGAGCAGCTGGGGGTTGAGAGAACACGCATGGACAGCACAGGATCCATTGTCTCCTCCGACAATCCTGACTCAGACCAGGAGGAGGagctggatgtggatgtggagGGGACTGACTACCTGCTGGGGGATCTGGAGTGGAGCACCAGCAGTGTCAGTGACTCTGATGAGCGGGGCAGCCTGCGCAGCAGCTGCAGTGACGAGGGCTACTCCAGCGCCAGCCTGCGCCTGCGCATGCAGAACCAAAACACTCAGGAGAAGGCTGAGCAGCTGGGCTGCAGCCTATAAGAGCACAGCCCTTAACCTCTGACCCCCAGCCCCCATCCAATCCCGTCACTCTGTCGTCCAGTTAACTCCCGCCCTCCAACCAGTCTCTACCAATCAGACCTCACTCCCAGCAGGACTGGCCTGTTCTGACCAAGCCCCCTCCTCCTTTCCAGCTATATTCCACCTCTTTCCCCCCTGAAACCCCCAATGCAACACCTCTTAGATACACCCACCGTCCTATCTCAACCGTTGATCCTCCATCTAAAATGGAGGATCAGTCTGTGGCACTGCCCAATCAGAGCTTTTTGATGTGTGGGATTAGGAAGATAAGACACTCCGTCCGTCCCTTTGTGTCCACCAGCCTGCCCCCTtccttctgtccttccttcctgcTCTGCTGTCTGTTTCAGTGCAAGAGCCAAGTAGAGGTGACTGACTTTTCACATCCATGCAGTGTCCCCCTTCCAGCGTCCGAAAACTTAAGACAGCTAGAGAATGTGATTACAACACCACACCTACACCCCACTGCCTCTCTCTTGTTCAGAAGCCATCTGAAGCAATCCAGTCATGATGAGAACCCCTCTCGACCCCCAGTTCTAAATCCCGTCTCGCCCATTTCTCCCATGAGACTGGCCCCTCCATAGGTGGTGGTGATGCAGACAGCAGAGCTGTGCCACCTGACTAACCAGCTGACCAATCACAGCATGGTATTTTGGAATGGAGTATAGGAATGGATGGTCTTGGTCAACGAGCTGTGGCGTGGTCATTTTAAACAATCTACACTGCAGCTATTGTAGTAATGTTATCAGGTGTAGTCTTTCAGTAAGTCTTTATGGTAAATAATCGTCTACCTGCACTGTCCACGTGAAGCCTCACTGGGAGTTCTACGACGCTAAGCACGGCTGTGACGTCATCCATGTTCCACAACCTCTTCGTTGTTGTGGTCGGCAGCAatacatccatccctctcttctctaccaggCTTAGCGGCCGGATACATACCTCCATGTTTATGGCTCTTATGGGGTGGGGGGGTTATTAAGatgtcattttttttgtccacACCTGCCATTTCAGAATTTTtatgatttggggggggggggggggggggggggggtgtaggaaaAAAAACCTTGTGAGGAACAATGTGCAGCATGAGATTAAGGGGTGGGGTGATTGGGGTTAAGGCAACTTGTACCTTCCTCTCTCTGATGACGGTGGCGTCTAGCTTGTGTTTTAATGTACGTGTCTGTGTTGCTGCTGGTCACGCACTGTAGCCAGTGGTAATCACTTAAATGTGTCTGAAGGgaagtcacacagacagacagtacattaaCTGTTGAAATAAACCAGTAAAGAGATTAAAGCACATTCCATGTTAGAGAGAAAGTAAGGTGTGTTAGTAGAGAATTACCTTTGCCCATATTTATGAGGGAGAGCGTTTTGCAGTTTTAATGACAGGAAGGATCTAGCTATCAGTTTCAGGTTACCCACAAGCAGAACACAACAGATTTGCTGACTTGCTTTGCCTTTCAGTCAAAACACAGAACAAGGAAAGTCGACGTCTATTGAATTAGTTCACCTCTGAAAAGGAAAGAGCAGAAAGGTTACTGTACACTAAATATCTGCCTGGCCTATAGAGCTATTTATTATTTTAGCCAAATGTAGTCATGTTTATGTAAATAGTTGACACAGAAAGAGCTCTATGTATattgaataaaaaatatttatattatatCTAAATATCTAGTTAATTAGTTATCGCTTTAGTTATGTTATTCTTGTGAGGTTTGTGTGCTTGGTTTGCACAGCATAGTCAATCCATAGCTTTTTAGAACTGTCTTTTGTGCCTATAGACTTTTGTGTCCTTTCAGAAATTGGCACGGTGCTCCTAGAAATGAATGAAATTGTTTCGTGGTTGattatatttttaaataataataaacatcCTCTGTCAATAGGAAAATAATTTAAATGaatataataatttaaaaaaatggaatataaaaatgtatataatttAAGAGAAGCTGGTGTTGGTGCTTTGGCATTGCTGTGACGGTGGGAAGCTACAGTGAGGTTTCACCCTTCTTTGTGCCTGAGAGCCTGAAACAAAATGGCTCCTTGACCCAAGAGATTATAACATAGTGTAGCGAGAGGAGGAAATGGTGGGTTCAATAACCTGGGGGATAAATTGGAGAGGATTGCAGTAGCGGTTGGATGTAGTTGACTAGCCTGTAATCTATCTCCTGCACTGTTGCAGCACAATGGCGAACCTGGAACCTGTCACATGCAGAATCTCGTTAGAATGGGAAGATGGTCGATACACAGACAAAAAAAATATAGGATTAgggttgtttagtgttgtgtgtgtgtgtgtggaatgctGCACTTCTGTGTCACTTAAAAAAAGCTATCCAAAAGGAGAGGAACGATGTAGCCATGCTAGAAGAGGATTGTTGTGAATTGAGCCCCTGGCTGAAACTGGTGTTATGGGGCAGGTGTGTGTATGTCCCGTCACTGTCTTCAGAGAGAAACTATAAGGCTttggggagagggagggttgtTTTGAATGGGGGATAAAAATGGCACTTATATGGATGTTTTTAGTTGtttacaagtttttttttttaaatcccaccTCTTCAAAGAAGACCTCATGTATTATTAAAAGATCGAATGGGATCTTAAGCACttacaaattcataacatattgtatgaattggaattcgtaacatacgAATTGAGAAGGGGAAAAAAAGGATGACGTGCACAATTTTCTGGGACCCGTTTTGTCTTGAGtgctactttcaaaactactggttGAAAATATACGAAACCTCTGTAGCATCACTTTAACCTAAGCATTGTCTGTTATTCTGGGGCCACACACTTCTCTTTCCCTCCGTCCATGGCCTGTTTTCTGTGTCTTCCACTCCTCGTGTGTGAATGTGGCTCCCATTGAGAAGAGATTTCTATGGTggtcccccacccccctcctcccacATGCTGTGAGCCAGCCACCATGGTGCAGAGGGAGCCTGAGGGAGCAGACTGGGCTGTTTGTACAGTATAGCTGCAGCTCTCCTACCTCCCCGTATTACACTCTGTTAACACCCTTGGTGCTTCAGCATCTGCCTTGAGCAGGTGTGGATTCTTAAAGAACAAGCAGATCACTGCAGTTGGCTTCTGTGTAGTCCTGTGTAAGCTATATGGGATATCACCCTAGgaattcaaaataaatacaaatgtgtgtgtatatttgggTTAGGTTCGTACGAAGTGGCTTAAGCCTTAAAACAGACAACTGTAAGAGAACCATAGTAAAGTATATTATATATGAATGTATATAATGTAAGTATAGACGTGTTATTACAAATGTCATTATTTTCATTGTAGATGTCTCGGGTGTGTTGCTCTCCCTCATACGCGCACACACGTTGTCATACACGCACGTCAGAAAAACGATGGCTTAAAGGGTTGGTTCAACTATTAAAAAGGTTGACGTTTTGTGCACTTCCATTTTAGAATTGGGGAATTTGAATATTGACTTTAAAAGAAAGCACTTAAACATttcggagagagagaaaaaatgggGAAATGTGGAGCAGTAATTTATATTCGCCAGTGACATGAAAGGAATAAAACCTCTCCCAACCTTGTTTACCTA
>TU570099
ctatggtggtccccctcctcccacATGCTGTGAGCCAGCCACCATGGTGCAGAGGGAGCCTGAGGGAGCAGACTGGGCTGTTTGTACAGTATAGCTGCAGCTCTCCTACCTCCCCGTATTACACTCTGTTAACACCCTTGGTGCTTCAGCATCTGCCTTGAGCAGGTGTGGATTCTTAAAGAACAAGCAGATCACTGCAGTTGGCTTCTGTGTAGTCCTGTGTAAGCTATATGGGATATCACCCTAGgaattcaaaataaatacaaatgtgtgtgtatatttgggTTAGGTTCGTACGAAGTGGCTTAAGCCTTAAAACAGACAACTGTAAGAGAACCATAGTAAAGTATATTATATATGAATGTATATAATGTAAGTATAGACGTGTTATTACAAATGTCATTATTTTCATTGTAGATGTCTCGGGTGTGTTGCTCTCCCTCATACGCGCACACACGTTGTCATACACGCACGTCAGAAAAACGATGGCTTAAAGGGTTGGTTCAACTATTAAAAAGGTTGACGTTTTGTGCACTTCCATTTTAGAATTGGGGAATTTGAATATTGACTTTAAAAGAAAGCACTTAAACATttcggagagagagaaaaaatgggGAAATGTGGAGCAGTAATTTATATTCGCCAGTGACATGAAAGGAATAAAACCTCTCCC
>TU570100
ctatggtggtccccctcctcccacATGCTGTGAGCCAGCCACCATGGTGCAGAGGGAGCCTGAGGGAGCAGACTGGGCTGTTTGTACAGTATAGCTGCAGCTCTCCTACCTCCCCGTATTACACTCTGTTAACACCCTTGGTGCTTCAGCATCTGCCTTGAGCAGGTGTGGATTCTTAAAGAACAAGCAGATCACTGCAGTTGGCTTCTGTGTAGTCCTGTGTAAGCTATATGGGATATCACCCTAGgaattcaaaataaatacaaatgtgtgtgtatatttgggTTAGGTTCGTACGAAGTGGCTTAAGCCTTAAAACAGACAACTGTAAGAGAACCATAGTAAAGTATATTATATATGAATGTATATAATGTAAGTATAGACGTGTTATTACAAATGTCATTATTTTCATTGTAGATGTCTCGGGTGTGTTGCTCTCCCTCATACGCGCACACACGTTGTCATACACGCACGTCAGAAAAACGATGGCTTAAAGGGTTGGTTCAACTATTAAAAAGGTTGACGTTTTGTGCACTTCCATTTTAGAATTGGGGAATTTGAATATTGACTTTAAAAGAAAGCACTTAAACATttcggagagagagaaaaaatgggGAAATGTGGAGCAGTAATTTATATTCGCCAGTGACATGAAAGGAATAAAACCTCTCCCAACCTTGTTTACCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606338.2 False 5143 mRNA 0.44 6 36619720 36644654
TU570099 False 673 lncRNA 0.42 2 36581096 36644639
TU570100 True 688 lncRNA 0.42 2 36581096 36644654

Neighbor

gene id symbol gene type direction distance location
LOC110525865 NA coding upstream 1330 36615875 ~ 36618390 (+)
LOC110525864 addb coding upstream 5841 36588372 ~ 36613879 (+)
LOC110525862 LOC106580494 coding upstream 140604 36471094 ~ 36479116 (+)
LOC110525859 LOC106585101 coding upstream 344772 36213903 ~ 36274948 (+)
LOC110525861 LOC106585102 coding upstream 405844 36203892 ~ 36213876 (+)
LOC110525867 LOC106585106 coding downstream 9795 36654449 ~ 36661321 (+)
LOC110525868 LOC106585108 coding downstream 27000 36671654 ~ 36693673 (+)
LOC110525869 LOC106585107 coding downstream 56577 36701231 ~ 36711251 (+)
LOC110525870 LOC106585109 coding downstream 68369 36713023 ~ 36718572 (+)
LOC110525877 LOC106585116 coding downstream 361488 37006142 ~ 37018884 (+)
G501915 LOC106585103 non-coding upstream 99787 36516560 ~ 36519933 (+)
G501908 NA non-coding upstream 117378 36502062 ~ 36502342 (+)
G501903 NA non-coding upstream 122668 36496826 ~ 36497052 (+)
G501894 NA non-coding upstream 130758 36488778 ~ 36488962 (+)
G501896 NA non-coding upstream 133138 36486262 ~ 36486582 (+)
G502074 NA non-coding downstream 162877 36807531 ~ 36827791 (+)
G502084 NA non-coding downstream 195803 36840457 ~ 36840732 (+)
G502341 NA non-coding downstream 211407 36856061 ~ 36856449 (+)
G502353 NA non-coding downstream 223857 36868511 ~ 36869188 (+)
G502365 NA non-coding downstream 237133 36881787 ~ 36882027 (+)
G499111 NA other upstream 2467983 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 3154665 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 3299372 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 3455459 33135282 ~ 33165186 (+)
polk polk other upstream 3690869 32926258 ~ 32936958 (+)
fancc fancc other downstream 2625305 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 3029358 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 3090130 39734703 ~ 39750180 (+)
G505988 NA other downstream 3317998 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 3552146 40196800 ~ 40203886 (+)
LOC110525858 LOC106585100 coding upstream 382346 36160271 ~ 36198750 (+)
LOC110525857 LOC106585098 coding upstream 440778 36127045 ~ 36140318 (+)

Expression


Co-expression Network