LOC110525867 (LOC106585106)


Basic Information

Item Value
gene id LOC110525867
gene name LOC106585106
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 36654449 ~ 36661321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606339.2
TTGACCAAAGGTCTATCTTGGCTTGTCTGTGCAGCATGGATTAGCCTGAAATACTTACAAGTTGAATTCGTGTTCCCCTGAGAATAGCTCTTTTTGCAGGAGCTTGCAGGTTTCCCTTACCCTGCTCCTGCCCCTGCGTCAAATGATGCTCGAGTTTCATCATTATAAAAGCACCTGTCTTTGCCAGGCATCACTCGtatctcacttcctctctctttctctctcccacacactctcACACGGGGCAGTGAGAAGGGACTCCGCAAGCAGCAAAGGTCAGACTAGCATTCCACTTCTCCACCTGGAAACATGAGTTACTCCGGCGACGTCTACTCCAGCAGTTCCTATCGGAAGATCTTCGGGGATGCGCCCCGGAGCTCCGGCCGCATGTCGGTGGGCAGCAGCCCCTCTCGCCTGTCCGGCGGATACCGCTCCAGCGGCTCACACCGCAACTATGGCTCCCCATCCATGGTCACATCCTCCGGCTACCGCAAGGCGGGTGCCGGGCGCAACTTCCACTCCTCCATGCCCGACTCCATGGACTTGACCCAGTCCACGGCCGTCACCAACGAGATGAAAATCATCCGCACCAACGAGAAGGAGCAGCTCCAGGGCTTGAACGACCGCTTCGTCTCCTTCATTGAGAAGGTCCACAACCTGGAGCAACAGAACAAGGTTCTGGAAGCCGAGGTGACTCTACTGCGCCAGCGCCACACAGAGCCCTCCCGTCTGCACGACTTGTACGAGCAGGAGATCCGGGAGTTGAGGGCGCGGGTCGAGGAGCTGACGCACGAAAAGAGCCAGATGCACCTAGACTGCGTGCAGATGAACGAGATGCTGGACCGCGTGAAAGAGAAGCTGGACGAGGAGACGAGGCTTCGCGAGGAGGCGGAGGGCACCTTGAAGAGCTACCGTAAGGACGTGGATGACGCCACGATGTCCCGACTCGAGCTGGAGAAGAAAGTCGAGTCACTGCTGGATGAGATCGCCTTCCTCAGGAAAGTGCACGAAGAGGAGCAGCAAGAGCTGCAGGCTTCCCTGCAAGCCACACAGGTTTCAGTGGAGATGGACATGAGGGATGATAAACCCGACCTGGCCGTGGCCCTGAAGGACATCCGTGCCCAGTACGAGGTCCTGTCAGCCAAGAATCAGAACCAGGCCGAGGAGTGGTACCGCTCTAAGTTTGCCAGTGTGAACGAGGCGGCCTCCCGCAACCAGGACCAGGCGAAGCATAGCAGGGAGGAGCTAAATGAGTATCGCAGGCAGGTGCAGGCCCGCAGCCTGGAGATCGAGGCTCTCAGGGGCCACAACGAGGCCCTGGAGAGGCAGATGGCTGAGCTGGAGGACCGCCATAGCAACGAgatgggagagatgcagGAGACCATCCAGGAGCTTGAGTCTGCCCTCCGCAGCACCAAGGGGGAGATGTCCCGTCACTTGCGTGAGTACCAGGACCTGTTGAATGTCAAGATGGCCCTGGACATTGAGATCGCTGCTTACAGGAAGCTGCTGGAAGGTGAAGAGTGCCGTCTGAGTACAGTTGGCGGAAATATCTTGCAGTCAGGTTACTCTGGCTTCTCCTATTCGTCCAGCCGCTCCTACGTCCTGGGTTCCTCCGCCCCTTACAGGATGAGGGGAGCCAGGCCTGAGGAAccagagaaggaggaggatgaggaagagaaggaggaagaggagaacgaggaggaaggagaggagggaggggatggagaagAGAATGGAGATGAGAATGCAGTGGAGAATGGAGATggggatgaggaggaagatgaggaagaggaggatgacgttcagaagaagaaggaagagaaggggggTGCTCCCAGCAAGAGCACCAAGAGCTAAACTGCTTGTGTCATTGATCATCAATGCCTTTCGCCCTACTACAGTCCACTCATTCACTCATATGGATCCCTTCCCTGTCACCTCATTTCTGATTCACAAGGACACACACTTACCGTACTCACGCCAGATGCCTCACACACACGTAccttctcctctcgctctctgggTATCAATAATCAGCTGTGTGGTGgaaaacagaaagacagacaacGCAGAGAGGTGCATTACCCTGCCAGAAGATAAACCTGCAGCTACATTTTCTCAGTATTCTATGTCACGGTTTTACTCCATAGATGATGGTTACCACAGGGAGCAGAGGAAAGGTGGTCAACGTTACACTATtaagccagtcagtcagcaaaAGAGAATGCCTTAAAGCAAGTATGATGTCAGATTAAGAAGTCAGGGATGATATCGCCCAGTAAGGTCCCGTCTTTATGTGCCATTAAGGATATGCGATGTGGTTATTAGGAGCAATTCAATTGTAATCTTGAAGGTAATAGTAGGATACTGGTAGTAGCACACAGACTATGCCGACTATATGCACAGAGGTCTAGAGCATAGAGATTTACCAACTTCTACCAGTCCAACATTTAAGGTGCTTTTTGAAGAAATAAGTAAAGATCATGCCCATGGGTGCCATGCCATATTCTTGGCTGAAGATACCAACTGGCACACTGAatgctcctccctcctctctttttcaTTCACAGGAGAAAGATATGGAATGCTCTGTCCATTGAGCCACTTTCTTTTCCATCACTTTTCATCACCAGAAAAGTCAATATTTCCCCACTCACCTTCCCCCCCTCTCACTGTCACTGCGAATGTCATAGCACGGCAAAATGACAACATGGATTCTAGAAAAAAAGTACATGAAACCATAGCGTTTATTTGGGAGGGTTCTAATTTCAAAGGTAGGAGATAAGTGCATTGTGCAACACCTCTTCTGTGTTCAGAAGGACAACATTCAGGACTGAGAAATGTAGAGTTTTAAAATGCTGCTATTTATCACACTATACCCTTATATTTGATGTTGAAATACCCTCTCTTGATTGATTCATTTGTCACTGAATGGATATACCCTCAAAGTAAGATAACTCTCTCTAAACCTGAGGTAAATGTCTCTCCTAGTCCCTTCCTTACCCCAGAGCAGCCTAGGTCTTGTTTGTTTACTATCTGCGGTCGTTTACTGCTCTGTACCCTACGACCTTCTGGCTGGTGGTTTGAGTGGTAGAGTGTGTGTTGTtaagtcccaaatggtaccctattccgtATTttctgcactacttttgatcagagcccatcGGGATGCAGCCTGTGTTTGCTTTTAGCAGTGTGCTCTGCTCCAGACAGTTAACAGGCCTGTGGCTGCTGTGAAGGACAGCTGGAGGTGACAATGAGTGAGAGACAGCCCTCCACTCTGACTGCATCACAGGTGGCCGgccggtggcaccttaattggggagtacggtctcatagtaatggctggaatggaatggtatcaaacacaccaaacacatggtttccatgtggttgataacATTCCATTCACTCAATTCCAGtcattatgagccatcctcccctaaGCAGCCTCATGTGGACAGCAGGACCAAGTGGCAGACGGTGCAGACGCCACTGGGGTCATGGGTGGTCACATGGTGCTGCGCCACAGATAAGGGCTATTATcaccataccccccccccccccccccccccccactaccacAGTCTGAGATGGACAGCAACAGTATGTACACAGGACACCCTAGGCAGACATATCGTAGCTGCACGAGAGGGACCATAATAGCATACTGTAAGTTATATGGCCGGCTAGCTTCCATCAAGGTGCTAAGCTATCGATATCAGGACTATCTGTGGGTCAGGATACAGTGAGTGACTGCAGAGATATGTAAGGTTATAAAGAATGAGTGAAAATGTTAAAGAAGGAGACATTTATGATTTCTAGTGATAAAAGGAAAAGTGTTGCAGGAAGTTTGTTTAGGGAAAGAAAAATACATGGAAAACCCCAAATGGAATGTACTCTAGAATCCTATACTGTAGTAAAATGGAATGTACTCTAGAATCCTATACTGTAGTAAAATGGAATGTACTCTAGAATCCTATACTGTAGTAAAATGGAATGTACTCTAGAATCCTATACTGTAGTAAAATGGAATGTACTCTAGAATCCTATACTGTAGTAAAATGGAATGTACTCTAGAATCCTATACTGTAGTAAAATGGAATGTACTCTAGAATCCTGTACTCTAGAATCCTATAAAATGACCTGTCCTCCAAAATGTTTGTAAACTTACCGTGGGCAAATGTATAGCTTCACAGAATGTTAAATGTTCTGTTTCTGAGACTGGCACACACTGTGGAAGGCCTTATCTTTAACCGTTGTAGATATCACTCCTTCTTCCTTTCCTTGAGAAATGAATCAATTGACAAGCATTGACTGCATGGCCTGATTCTTGGGAGCTTGAAAACTGGGGATGGGATAGAAAAAAGATAATTGCCTTAACCATGTTCAAAACAATAAAACAACCTTTTCACTTGCATTTCCCATGTTTCCCGAGGTGGTTCAGGAGTGTTGACACAGACCATTCATTCTGCTATACTACTGTGACTGTACGTGCTGCTGTCTCATGCTGTGATATTCCTCCCAAAGCCAAATAAAGCGATTTATTAACCAAACACTCACAA

Function

NR:

description
low molecular weight neuronal intermediate filament-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606339.2 True 4568 mRNA 0.49 4 36654449 36661321

Neighbor

gene id symbol gene type direction distance location
LOC110525866 LOC106585105 coding upstream 9795 36581096 ~ 36644654 (+)
LOC110525865 NA coding upstream 36059 36615875 ~ 36618390 (+)
LOC110525864 addb coding upstream 40570 36588372 ~ 36613879 (+)
LOC110525862 LOC106580494 coding upstream 175333 36471094 ~ 36479116 (+)
LOC110525859 LOC106585101 coding upstream 379501 36213903 ~ 36274948 (+)
LOC110525868 LOC106585108 coding downstream 10333 36671654 ~ 36693673 (+)
LOC110525869 LOC106585107 coding downstream 39910 36701231 ~ 36711251 (+)
LOC110525870 LOC106585109 coding downstream 51702 36713023 ~ 36718572 (+)
LOC110525877 LOC106585116 coding downstream 344821 37006142 ~ 37018884 (+)
zgc:110329 LOC106580513 coding downstream 553055 37214376 ~ 37238392 (+)
G501978 NA non-coding upstream 5115 36623337 ~ 36649334 (+)
G501915 LOC106585103 non-coding upstream 134516 36516560 ~ 36519933 (+)
G501908 NA non-coding upstream 152107 36502062 ~ 36502342 (+)
G501903 NA non-coding upstream 157397 36496826 ~ 36497052 (+)
G502074 NA non-coding downstream 146210 36807531 ~ 36827791 (+)
G502084 NA non-coding downstream 179136 36840457 ~ 36840732 (+)
G502341 NA non-coding downstream 194740 36856061 ~ 36856449 (+)
G502353 NA non-coding downstream 207190 36868511 ~ 36869188 (+)
G502365 NA non-coding downstream 220466 36881787 ~ 36882027 (+)
G499111 NA other upstream 2502712 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 3189394 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 3334101 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 3490188 33135282 ~ 33165186 (+)
polk polk other upstream 3725598 32926258 ~ 32936958 (+)
fancc fancc other downstream 2608638 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 3012691 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 3073463 39734703 ~ 39750180 (+)
G505988 NA other downstream 3301331 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 3535479 40196800 ~ 40203886 (+)

Expression


Co-expression Network