LOC110525871 (LOC106585111)


Basic Information

Item Value
gene id LOC110525871
gene name LOC106585111
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 36740816 ~ 36746535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606343.2
caatttactGCTTCTGTGGCTCCATTACCCTCCCACCAAACGACAGCCAATCGTGTTCTGTCAACCATTGTGGAagagaaaataagtatttaattAGGCACTCGAGCATAAACTAAATGCGTACCGTCAGCTGGAGAGAGTGAATTGAAGAAACTTCATCATGGACTACGTTATTACAAAGTAGTAGCCAACACACTTGGATAAATGCGGAGAACACTTCATGATGGTATTATGAATATTAGTACTTTTCTAAAACATGGGAACCCAGATGGACTGCTGCTCCAGCCGCTTTGGGATGATCTGCGAGCACAACGGGAGTTCCTCACGTCACCTTTCCTGCCCGCATGCTACGCTTTCCTCATCCACCTTCTCCTCTGCGCACCTTTTCTAGCCTTTGAAGCGCTGGGATGTTTCTGGCCACGGATAAATCTCTACAGGATCTCGAGGACCGCTGAACCGTTGCTGTTGTGTTTGCAGCGATGGGTTGGCTGCTGTTGGAGGATTTTTCAGAAATACCTGACAACTGTTCTCCCAGCCACCGCGCTTTATCAAAGAGTTAGGATTCCAAGATTTCCCGAACTCGCGCCATCATGCAGCCTGCTCATTGGGGAGGTTATCACGTGCCTACTTTTATTTGATGCGCTGTTCTTTATATGGCATTATTCCATGCATCGGGTTCCCTGGCTGTATCGGAGGGTCCACCAGACTCATCACCAGAACCGGATCACCTTCGCCCTGACTGCCCAGGACGCCAGCCCGGCTGAGCTACTCTCCCTGCAGATGCTGGCCCTGAGCAGTGCCTGGGTGGTGGGCTGCCACCCTCTGAGTGAGGCCCTGTTCCACCTCCTCAACACCTGGCTGGCCATAGAGGACCACTGTGGCTACGACCTGCCCTGGGCTATCCATAGACTACTGCCCTGCTTCGGAGGGGCCCCCTTCCACCAGGCACACCACCACATCTACAGGGGGAACTATGCCCCCTACTTCAGGCACTGGGACTGGCTCTGTGGGACCTACCTGGGGGTAAGGGATGAGGCTGGGAGTAAACATGGAGGGAGGACAatcaggagaaggagaagaaagaagagccttggatctgtctgtgtgtgcgcacaAGCTTGCATGTGTTAAAATGAATGTAATCTATGAAGCAAACAAAGAACTGACATCTTAGGTAGCATCATTAGTACAGTGAGTACAGGCTAACACATGGGTTATGTGTACTTGTGTTTGTAAATTACAGGTGGTTATGTTGACTCAAATGGAATATTTTGACAAGCATTAGATATGAAGAGACAATGCTGGTCATTTGGCTAAATGTGAAAATAAAGGacagccgcacactctaggagctcagatgcaaaaatgtaatgtccaacgttttgacagacaagctgtcttcatcagggtataatgacaaacactgcgggatgactagtttatatagtgtcaaaagacacatgCAGGTGTcatggcttgtgaaagtattgtGTATTGTGAAACATATGTGATTAAACATGAAACTTtttgtgaaaagatgtaatgtgatgttacaGTTCTAAACGAGAAAATACGGGTTTTCATGTCAAGTTAACAAAATCATTGGTCACGCCCACGTGAGCATAGACATTAATTCGGTGTCATGGAACCGCCCCTTCTTCCACAGAGTATAAAACCCACTTCCTACAAAATCTACATTAAGTCAGAGAACGCCGGGACAGAGTCCCCACGTTGGAATGGCTACAATTCTATAGATCATTAGACCATACAGCTGTAGTTTATGGCTACACGAttggaaatggttaaactctgagactatcaatcactacagaataagagcaaatcttagacacatacagtgccttgcgaaa

Function

NR:

description
cholesterol 25-hydroxylase-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606343.2 True 1871 mRNA 0.47 2 36740816 36746535

Neighbor

gene id symbol gene type direction distance location
hk2 LOC106585103 coding downstream 171673 36507843 ~ 36569143 (-)
LOC118965023 NA coding downstream 780520 35956499 ~ 35960296 (-)
LOC110525855 LOC106585096 coding downstream 909677 35821517 ~ 35831139 (-)
LOC110525851 LOC106580470 coding downstream 1238353 35448724 ~ 35502463 (-)
LOC110525849 dgcr8 coding downstream 1295045 35435376 ~ 35445771 (-)
LOC110525872 LOC106585112 coding upstream 1984 36748519 ~ 36764097 (-)
LOC110525874 LOC106585113 coding upstream 30336 36776871 ~ 36780823 (-)
LOC118965024 NA coding upstream 107853 36854388 ~ 36858232 (-)
LOC110525875 LOC106585114 coding upstream 204971 36951506 ~ 36969236 (-)
LOC110525876 LOC106585115 coding upstream 223533 36970068 ~ 36987765 (-)
G502219 NA non-coding downstream 29570 36710322 ~ 36711246 (-)
G502230 NA non-coding downstream 79498 36647386 ~ 36661318 (-)
G502204 NA non-coding downstream 86317 36653717 ~ 36654499 (-)
G502192 NA non-coding downstream 96177 36640815 ~ 36644639 (-)
G502176 NA non-coding downstream 126941 36563480 ~ 36613875 (-)
G502327 NA non-coding upstream 82944 36829479 ~ 36829839 (-)
G502364 NA non-coding upstream 134889 36881424 ~ 36881713 (-)
G502372 NA non-coding upstream 139934 36886469 ~ 36886815 (-)
G502374 NA non-coding upstream 141138 36887673 ~ 36887896 (-)
G502376 NA non-coding upstream 144869 36891404 ~ 36891637 (-)
G501142 NA other downstream 972887 35765366 ~ 35767929 (-)
G498960 NA other downstream 2699642 34040359 ~ 34041174 (-)
LOC110525812 LOC103397138 other downstream 3404036 33332650 ~ 33336818 (-)
G498484 rpl6 other downstream 3410312 33327507 ~ 33330504 (-)
vamp8 LOC106585118 other upstream 304168 37050701 ~ 37065030 (-)
G503064 NA other upstream 493309 37239844 ~ 37240937 (-)
G503159 LOC106580514 other upstream 584949 37331484 ~ 37336552 (-)
nsmfb nsmf other upstream 2208335 38926899 ~ 38967540 (-)
G505472 NA other upstream 2459343 39205878 ~ 39206269 (-)

Expression


Co-expression Network