zmat4a (zmat4)


Basic Information

Item Value
gene id zmat4a
gene name zmat4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 37628795 ~ 37778250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606382.2
AGCGGGGCGGAGAACAGTCGACGGTTGTACTACAGCATAGTACTGCAAACAGCTGTCTGCTGCTTTGTACACACGTTTCGCTGATCTGGTCAATGGATTACACAGTTTCCCTACAAGTGCAACATCAATTGACGGTGTTCCCGACACACTTGTACCAGGGTTACAGTTTGGAGTTACAGATGAAGTCTACAGAAGTGGACCAAGGGCTTTTCACAGACACCTACTGTAAAGTGTGCAGCGCTCAGCTCATCTCCGAGTCCCAGAGGGTTGCCCACTATGAGAGTCGGAAACATGCCAATAAAGTGCGGCTGTATTACATGCTACATCCCGTGGATGGAGGCTGCCCAGCAAAGAAACTCAGAACAGACAATGGCAGTGAGGAGGGAGACGTGGACAAGAACAAGTGTTGCacactgtgtaacatgtccttcACCTCAGCAGTGGTAGCACAGTCACATTACCAAGGCAAAATCCACGCCAAGAGACTAAAGCTGCTGCTGGGGGAGCAGCCTGCCATCACAGCAAAagAGGCTCCGCCCAGTCCCGTGAAAAGCTCCCCAGAAACGACCCCAGTGACCTCTCCTCGGCAGCGCAGGGACTCGGACCGCTACTGCCAGCTATGCAACGCCTGGTTCAACAATCCGGGCATGGCGCAGCAGCACTATGACGGCAAGAAGCACAAGAAAAACGCAGCTCGTGCCGACCTCCTGGAACAGCTGGGCAAGACCCTGGACATGGGAGAGATGAaagGTCTGAAACGTAGCTATACCTGTGAAGTCTGCAGTGTCACACTCAACTCTGTGGCACAGTACCATGCACATCTGCAGGGCTCAAAGCACCAAAACAACCTGAAGAATCAGATATGTGTCCAGTGAATCTTGAAGAACAAAACAAACCATTTGATTGATGTCAGACAAGCTGTGTTCAGCTTGCCCCAATTTTTCTGCCTCtgccctgctttctctctctaccacacaaacatacacacacacacacacacacacacgcacacgcacacacacacacgcacacgcacacacacacacactctctatcttTGTCCTGCTAGCATACAATAGGAGagcaagttttttttaaaatgcTTCAGCTCCACAGCATCTGTCTCACCTGTCAACTTAAGGCTTCTGCAGAACTCTTGTCATTTTGGCCATGTGATAATCAACATTCCACAGATTCTGCATTTCACACCAACAGATTCTCAGTACTTTTAAAGACGATGGTCGACGAGAATAAATGTGGATCCAGCAAAGGGACAGTCCCCTCAATGCATGAAGAAATTAACGACCTGCAACTTCATGCTAACTATGCTTTTGCTTTAGTTGTAAGTGGTTAGAGAGAGGAAGACTCTCAATGGCATTTTGGCTTGAGTAATAAAGTGTTTTTTGTAATTGATTTACCTGAAATAGAATATGTATAAGAGAACTGATATATAAGTAGTGTATTGTTTTTTAAATCTTATTTATGagtaatttatttttaaaatgtattttgccCTCAGACTGTTTTTTTTCCTTTAGAATAATGTATAATAATGTTTGGGTCTATGCTATATATTCCCATCTAATTTCACAGTAACATAATATCCCTGGTGGACAAGTTGGCAATAATAATGACAGTTTGTACAATGTCATTGAACATAATGGCATGGTGCACAAGTTGCTTTATATATAATACAGTAAAAGGTTTTCATAATGTTTACAATTTGAATCTGAACTGATTTATCTGCAGCTCTAGTAGTCCTAAATAGGggatctacaggtaactgccaaaataaaggaaacacaataaggtatattgaaagcaggtgtatTGAAAGCAGATGCTTCCAAACAGATGTGGTTCATtggttaattaagcaattaaaatcccgtcatgcttagggtcatataTAAAATGCctagttgcccattattttggactAATTAACCCAGGAaccacagtgactttgaaagaggggtctcaaaggagcatagggggtttaaaggtgtgtgtgtttgcatgtgtcagtcaccagatctcaacccaattgaacacgtATGGGAgatgatggaatttctcatggagttgtagaatctatgccaaggcaccttaaagctgttctggcagctcgtggtggcccaacaccccaTTAAAACACTATGTTggagtttcctttattttggcagttacctgtactttGTCAGTGTTCCAGGTATAAACATGTGTTCTCTGTTCCTCCATGCGGATTGAGGTTCAAATGTGGTCTTCGTCTCAGGGAGGTCCCATTGATTACTATTGTCCAGATTTATGATTCAGATTCATGATTCAACAAAACTGTTCAAAAAATGTGTTCACTGAATTCATTCCAATAGAGCCTTTTAGAATGTGTTAGTATTACAGCCAATTACAGTCGATTTGAATCAAACCATGTTATTCTGTAATGGTGTAAAACATTgctgttatgatgatgatgatgatgtcttaTTCAGAAATTGAGAGTATTTAAAAAGCAATCCAACTTTAATATACAACCTTATCTCAACCTTCTGTAGCAACTCTTTCATTCTAATAGTTATAAGAACAATAAAGCTATGTAATGACAGTGGTTGGTGTTGCGATACATTTTACTTAATCAGAGTATGGTGGTTAAAGAGAACTACTAAGCAGGTGTTCTAGTTTGAATTTCTATTTGTTCTTACTGTTGTAGATGAAGCAGTTTATTTGTAATTGGGAAAGCAGATATATCTGTATACAGACATAAGAGTTACTTATTATCCTGCCAGTACAGTGCAGTCAGTGTCTGTCGACAGCAAAAACGTGTTTGATCAATAGCCTTGATAAATGTGTTAAAAAGGGATTGTTGTGTGCTAATTTATAAATAACTGATCTGTTTGTTTTGAAATGAGCAATGTCTGGAATTGTTAAACCAATTGAAACCAACCCTTCTCCTACCTTTTTAATTTGTTTTAGAAGACTTCAGCCATTTTGGATTTACTGCTTACacatacaaaaaaaacacacctAAGCATTTTCATGCATcttagagagatggagtgagaaatTCTAAAACATACTTCCTGAACTGAACACCAACTGAAGCTGGCTCAACTCAGAGCCAACCGCCTTGTGAGATGCCACAGGCAAAAAAAGACAATAATGTATAAAGTGTTTTTAATATTACAAACAACTTAAGATGTGCATGAATGATTTACTAATTAATGAAACTATCCTTATCAGATCCACTGAATTTCTTTGCTCAGACCAAGTCATAACGTTGCATTCTGCCCAACTTTGCATTGGATCTGGTGTCTCTCCCTCGATCTCCAGAGGAACTCCACGTCTCATACACCCCTACTCCCTTTGTGCTCTCTCTAGGTTATGTACTCTACGGTGTCTGAAAAACAATAAAAGACACTTGcaactatactata

Function

symbol description
zmat4 Enables identical protein binding activity. Predicted to be located in nucleus.

NR:

description
zinc finger matrin-type protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606382.2 True 3431 mRNA 0.41 7 37628795 37778250

Neighbor

gene id symbol gene type direction distance location
LOC110525887 LOC106585127 coding downstream 146679 37468758 ~ 37482116 (-)
ogfod2 ogfod2 coding downstream 284711 37340705 ~ 37344084 (-)
LOC110525881 LOC106585120 coding downstream 435643 37160379 ~ 37193152 (-)
LOC110525880 casp3 coding downstream 525801 37097779 ~ 37102994 (-)
ncaph LOC106585119 coding downstream 551080 37068792 ~ 37077715 (-)
sfrp1a LOC106585130 coding upstream 46804 37825054 ~ 37842809 (-)
loxl2b LOC106585132 coding upstream 138180 37916430 ~ 37996902 (-)
hdr LOC106584955 coding upstream 233081 38011331 ~ 38018136 (-)
LOC110525897 LOC106585133 coding upstream 245768 38024018 ~ 38235017 (-)
LOC118965104 NA coding upstream 260245 38038495 ~ 38038547 (-)
G503368 NA non-coding downstream 16959 37611544 ~ 37611836 (-)
G503361 NA non-coding downstream 26907 37601619 ~ 37601888 (-)
G503358 NA non-coding downstream 31066 37597392 ~ 37597729 (-)
G503346 NA non-coding downstream 43579 37584963 ~ 37585216 (-)
G503342 NA non-coding downstream 47363 37581189 ~ 37581432 (-)
G504147 NA non-coding upstream 130240 37908490 ~ 37908848 (-)
G504173 NA non-coding upstream 131534 37909784 ~ 37909990 (-)
G504175 NA non-coding upstream 133736 37911986 ~ 37912237 (-)
G504244 NA non-coding upstream 316412 38094662 ~ 38098524 (-)
G504447 NA non-coding upstream 536931 38315181 ~ 38341619 (-)
G503159 LOC106580514 other downstream 292243 37331484 ~ 37336552 (-)
G503064 NA other downstream 387858 37239844 ~ 37240937 (-)
vamp8 LOC106585118 other downstream 563806 37050701 ~ 37065030 (-)
hk2 LOC106585103 other downstream 1111527 36507843 ~ 36569143 (-)
G501142 NA other downstream 1860866 35765366 ~ 35767929 (-)
nsmfb nsmf other upstream 1176620 38926899 ~ 38967540 (-)
G505472 NA other upstream 1427628 39205878 ~ 39206269 (-)
G505493 ptch1 other upstream 1454443 39232693 ~ 39233210 (-)
aopep cssa24h9orf3 other upstream 1643418 39313471 ~ 39434971 (-)
G506641 NA other upstream 1845435 39623685 ~ 39624344 (-)

Expression


Co-expression Network