sfrp1a (LOC106585130)


Basic Information

Item Value
gene id sfrp1a
gene name LOC106585130
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 37825054 ~ 37842809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606385.2
GACAGTTATCTTTGCAGGCGCTTGTGTGAGTCAGTAGCAGCAGAAGGGAACAGAACAGCGGGGCTGCAACAAGAAGGCAGGAGTGGAGTTACACTGAAACCTGAAACTTTCAACTCAGAGAGCATTTATCAACTGGACTCTTTGCGCTTTTCTCCATTTTATTTTTCTCTTGAAGcaggtctgttctattctacagtgAAAGCTTCATTGTGAGCTGCATTTTACTTTTATTCTGCAGACTCTCCTCTGTTGTGAACAATGAAGTCCATTGAACCATTGTGCCGTTGGAGAATCATCCCTCTGGCTTTGACCATGGCACTGGTGTCTGTGAGCAAAGCCTCTGAGTATGAATACCTGAGCTGGAAATCGGACATGTACAATGGTGGCCGCAGCTATGGCAAGCCTCCTCAGTGTGTGGAtatcccagaggacctgaggctGTGTCACAACGTGGGCTACAACCAGATGCTGCTGCCTAACCTACTGGAGCATGAGACTATGGCTGAGGTGAAGCAGCAGGCGGGCAGCTGGGTGCCCCTGGTGCATAAGAGCTGCCACCCGGGTACCCAGGTGTTCCTCTGCTCCCTGTTTGCCCCAGTGTGCCTGGAGCGCCCCATATACCCCTGCCGCTGGCTGTGTGAGGCTGTACGGGACGGCTGCACCCCTATCATGGAGTCGTTCGGCTTCCCCTGGCCTGAGATGCTCACCTGCGACAAGTTTCCTCAGGACGAAGTCTGCATTGCCATGACTGCACCCAATGCCACTGAAGCCACAAAACCCACAGGTTACTCCCCCATCTGTCCCCCATGTGACAACGAAATGAAAACAGACATCATTCTAGAGCACATGTGTGCCAGCGAGTTTGCCATCAAGACCAAGATCAAGGAGGTGAGACGGGAAGGAACGGACCGCAAGGTGATTCTGCAGAAAAGGAAGAAGCCGTTGAAACTGGGCCACCTGAAGAAGAAAGACCTAAAGAATCTGGTTCTGTACCTGAAGAACGGAGCCGACTGCCCCTGCCAGCAGCTGGACAACCTGGGCAACACCTACCTGATCATGGGCCGCAAGGTGGACAAGCAGTTCCTCCTGACGGGCATCCACAAGTGGGACAAGTCCAGCAAAGAGTTCAAAAAGGCCATCAAGAAACTCAAGACCCACAAGTGTCCAGCTTTCGAGAATGTCTTCAAATAATCAGACCAAGCCTTTCTAGAAGCATCTCATCATCATGCTACAGAAGAACTTGCACAACCAAACAACCCACCTTTGTTTAgctttttattgtttttgtttatacatctatatatatctctttgTATATTTACAGACCTGCTTTGAATTTCCTGTCGTCCATTTTCCAGTTAAGCAGTGTGATCATTGAGACCCGGTGGGTTTCCAGTTATCTGAAAAAGTAAATGACACTGCACCCCCCTCCTCCTGTACTGAAAGCGTTTCCACTTTTGTATGTAGATATTTGTGTTACACACTCCCTGAATGTGCAGTAAAAAGACCACAATTCAGTGAGTTCTGCTGAAATGGATGGACTTGCTCCTATTGCTCTGAACATGTATTAGTAGATCATAGATTTTACAATTAGATCAGATTGAATCGATCATACAGAATCAACAATTACTTGTATTTTAGCTTTAAAAGCCACATCATAGATAAGGTCATTGAATAACTTGTTGACAATAGTATGATAGTGTGTTTTCACCGGATTGTCTCATCCAAATAATGACTGCACTACAGTTGATTTTAAGAATTTCATCCTCTCTTCAGTTGCCTCTTTTGTTTCACATTTTCTTTGACTTGAAAAAGATATATACATATGTTAATCCAATCAATTCCAGTACATCAACTGCATCATCTGAGTCAAAATAACTTTTGCCTAATGGTACAAGTGTATGGAATGTACTTTGATGCAGTATGCATTGTtcagtatttcaattaaaatgcaaatcatttTCTTGAGTGGTTGCTCCGGTATatagtagaatagtagaataaTGAAATCCCTTGCATTTGTATATGATGTCAGATAATATTTGACcaaagttttgtttgtttttcgtTAATGCAGTCTTAAATTGCTACCCCTCTAGATTGACGTTCATTAAGTTTGTGACAACTTTGTGTAGCCTCACATTTTGAAAGTGCTAACAGTGGATTGACAAATCTGTATTTTGATTGTTTCGTTCAGTATTGCTGATCCATCTTAGCACTATCACGTTCAATGACTGAAAATGTGAATTCCTGCAGTGTATTTCTGCCCCTTGTTAtgtacatacacattttacataaaTATAGAAAACAATGAAGA

Function

NR:

description
secreted frizzled-related protein 1-like isoform X1

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K02166 SFRP1; secreted frizzled-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606385.2 True 2317 mRNA 0.44 3 37825054 37842809

Neighbor

gene id symbol gene type direction distance location
zmat4a zmat4 coding downstream 46804 37628795 ~ 37778250 (-)
LOC110525887 LOC106585127 coding downstream 342938 37468758 ~ 37482116 (-)
ogfod2 ogfod2 coding downstream 480970 37340705 ~ 37344084 (-)
LOC110525881 LOC106585120 coding downstream 631902 37160379 ~ 37193152 (-)
LOC110525880 casp3 coding downstream 722060 37097779 ~ 37102994 (-)
loxl2b LOC106585132 coding upstream 73621 37916430 ~ 37996902 (-)
hdr LOC106584955 coding upstream 168522 38011331 ~ 38018136 (-)
LOC110525897 LOC106585133 coding upstream 181209 38024018 ~ 38235017 (-)
LOC118965104 NA coding upstream 195686 38038495 ~ 38038547 (-)
tm2d2 NA coding upstream 657163 38498656 ~ 38520840 (-)
G503416 NA non-coding downstream 142322 37680246 ~ 37682732 (-)
G503368 NA non-coding downstream 213218 37611544 ~ 37611836 (-)
G503361 NA non-coding downstream 223166 37601619 ~ 37601888 (-)
G503358 NA non-coding downstream 227325 37597392 ~ 37597729 (-)
G503346 NA non-coding downstream 239838 37584963 ~ 37585216 (-)
G504147 NA non-coding upstream 65681 37908490 ~ 37908848 (-)
G504173 NA non-coding upstream 66975 37909784 ~ 37909990 (-)
G504175 NA non-coding upstream 69177 37911986 ~ 37912237 (-)
G504244 NA non-coding upstream 251853 38094662 ~ 38098524 (-)
G504447 NA non-coding upstream 472372 38315181 ~ 38341619 (-)
G503159 LOC106580514 other downstream 488502 37331484 ~ 37336552 (-)
G503064 NA other downstream 584117 37239844 ~ 37240937 (-)
vamp8 LOC106585118 other downstream 760065 37050701 ~ 37065030 (-)
hk2 LOC106585103 other downstream 1307786 36507843 ~ 36569143 (-)
G501142 NA other downstream 2057125 35765366 ~ 35767929 (-)
nsmfb nsmf other upstream 1112061 38926899 ~ 38967540 (-)
G505472 NA other upstream 1363069 39205878 ~ 39206269 (-)
G505493 ptch1 other upstream 1389884 39232693 ~ 39233210 (-)
aopep cssa24h9orf3 other upstream 1578859 39313471 ~ 39434971 (-)
G506641 NA other upstream 1780876 39623685 ~ 39624344 (-)

Expression


Co-expression Network