cd53 (cd53)


Basic Information

Item Value
gene id cd53
gene name cd53
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 38584458 ~ 38590364 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604963.2
TTTTGTCTTTCCCCTCAGTGCTATTTTGAAATGCACGCCCTGCACAAGTTCTCAGTATAGATTTACCATAATATACCCTAGAATAAGGAAGTAGAATGAATTgagaacaggaagtaccagtacagCCAAGTCAAAGGTGCAGTACATCCTCTACACAACGGATTGTAAAGGGTATCGGGCTTGATTAAAACTTGTATCACTATTTCAACTGACAAGGTCTGGAAGCACTTCTGGGAAATGGCTCAAAATTGCCTCAAGTGTTTGAAATACACCATGTGTATGGTTAACTTCTTGTGCTTTATGTGTGGAACGGCAGTGTTTGGTTTTGGAGTGTTCCTGATGTTGAACACCAAGGTTTCTGCTCTCATCCCCACCCTGTCCACCTTGAATCTGGCCAACACACTCTTCATCACCGGCATCATCATCACTTGCGTGTCCTTCCTGGGGTTCCTGGGGGCTCTTAAAGAGAACCGCTGCCTCCTCATCACTTTTTTCATCCTGCTGTTCATTCTGATGTTGGTGGAACTGACTGTAGCCTGTCTACTGCTGGTATATGAGAAAGAGATTGACAGATTCCTAGAGAAGGATCTCACAGAAAGTCTGGGGAAATCCAGGGAGCTAACTAAAGGTGGGAATTCCACAAAAAACACAGACGACTGGGACGTCATTCAGGTCACGTTCCAGTGCTGTGGGATCCACAACACAAGTGACTGGAAGGACAAAGTGCCTCCGTCCTGCTGCCGAGAGAGCCCATGTGATCCCAAGAAGCCAGTATACTGGAAGGCCGGTTGCTACAATAAGCTGAAGGTGTGGTTTGAGGAGAACTTCCTAGTCACCGGTGTTGGTGTGATTGTGCTCTGCATTATCGAGGTCCTGGGCATGTGTTTCTCCATGACTTTGTTCTGTCACATAAGCCGGTCTGGACTCGGCTACAAATTATAAATTCTGCTTACATGGTTAGGACCTTTCTGTTCTAACTGAAAACATCTGTCTTCAAACTGTTTTACAGATAATTTCCATATACAGAACTATAAACGTACAGGCACCTATGAGATTTTATACACTTAAATTAATGTTTGTTTTCTGTAATATAATGCCATCAGTTCATTTCATGCTGAAAGGCAGGCACTTTATAATGTAAACCCAAATAATGCAATAAACATTGAGCTTTTAAATTAATTTTAACCCCAAA
>NM_001165182.1
GGAAGTAGAATGAATTgagaacaggaagtaccagtacagCCAAGTCAAAGGTGCAGTACATCCTCTACACAACGGATTGTAAAGGGTATCGGGCTTGATTAAAACTTGTATCACTATTTCAACTGACAAGGTCTGGAAGCACTTCTGGGAAATGGCTCAAAATTGCCTCAAGTGTTTGAAATACACCATGTGTATGGTTAACTTCTTGTGCTTTATGTGTGGAACGGCAGTGTTTGGTTTTGGAGTGTTCCTGATGTTGAACACCAAGGTTTCTGCTCTCATCCCCACCCTGTCCACCTTGAATCTGGCCAACACACTCTTCATCACCGGCATCATCATCACTTGCGTGTCCTTCCTGGGGTTCCTGGGGGCTCTTAAAGAGAACCGCTGCCTCCTCATCACTTTTTTCATCCTGCTGTTCATTCTGATGTTGGTGGAACTGACTGTAGCCTGTCTACTGCTGGTATATGAGAAAGAGATTGACAGATTCCTAGAGAAGGATCTCACAGAAAGTCTGGGGAAATCCAGGGAGCTAACTAAAGGTGGGAATTCCACAAAACACAGACGACTGGGACGTCATTCAGGTCACGTTCCAGTGCTGTGGGATCCACAACACAAGTGACTGGAAGGACAAAGTGCCTCCGTCCTGCTGCCGAGAGAGCCCATGTGATCCCAAGAAGCCAGTATACTGGAAGGCCGGTTGCTACAATAAGCTGAAGGTGTGGTTTGAGGAGAACTTCCTAGTCACCGGTGTTGGTGTGATTGTGCTCTGCATTATCGAGGTCCTGGGCATGTGTTTCTCCATGACTTTGTTCTGTCACATAAGCCGGTCTGGACTCGGCTACAAATTATAAATTCTGCTTACATGGTTAGGACCTTTCTGTTCTAACTGAAAACATCTGTCTTCAAACTGTTTTACAGATAATTTCCATATACAGAACTATAAACGTACAGGCACCTATGAGATTTTATACACTTAAATTAATGTTTGTTTTCTGTAATATAATGCCATCAGTTCATTTCATGCTGAAAGGCAGGCACTTTATAATGTAAACCCAAATAATGCAATAAACATTGAGCTTTTAAATTAATTTTAACCCCAAAGATTGACTAAAAGCACTTTTCCCTCCC

Function

symbol description
cd53 Enables identical protein binding activity. Predicted to be involved in positive regulation of myoblast fusion. Located in immunological synapse.

NR:

description
Leukocyte surface antigen CD53

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604963.2 False 1192 mRNA 0.43 8 38584458 38590337
NM_001165182.1 True 1131 mRNA 0.44 9 38584544 38590364

Neighbor

gene id symbol gene type direction distance location
LOC110525902 LOC106585137 coding upstream 1557 38566569 ~ 38582901 (+)
lman2lb LOC106585136 coding upstream 22177 38556641 ~ 38562281 (+)
htra4 LOC106585134 coding upstream 86573 38481640 ~ 38497885 (+)
LOC110525893 LOC106585131 coding upstream 677295 37869319 ~ 37907163 (+)
tcim LOC106585128 coding upstream 1084229 37499196 ~ 37500229 (+)
si:ch211-102c2.4 LOC106585141 coding downstream 38682 38629046 ~ 38637996 (+)
LOC110525907 NA coding downstream 74304 38664668 ~ 38666501 (+)
traf2a LOC106585142 coding downstream 78115 38668479 ~ 38683603 (+)
LOC110525909 LOC100380751 coding downstream 156290 38746654 ~ 38857447 (+)
b3galt8 LOC106585144 coding downstream 267645 38858009 ~ 38860997 (+)
G503936 NA non-coding upstream 236771 38347186 ~ 38347687 (+)
G503757 NA non-coding upstream 486968 38090805 ~ 38097490 (+)
G503629 LOC106585132 non-coding upstream 662904 37916220 ~ 37921554 (+)
G503598 NA non-coding upstream 675432 37907355 ~ 37909026 (+)
G503487 NA non-coding upstream 802067 37782067 ~ 37782391 (+)
G504126 NA non-coding downstream 80942 38671306 ~ 38671690 (+)
G504715 NA non-coding downstream 180103 38770467 ~ 38770724 (+)
G504719 NA non-coding downstream 184109 38774473 ~ 38774817 (+)
G499111 NA other upstream 4432721 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 5119403 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 5264110 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 5420197 33135282 ~ 33165186 (+)
polk polk other upstream 5655607 32926258 ~ 32936958 (+)
fancc fancc other downstream 679595 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 1083648 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 1144420 39734703 ~ 39750180 (+)
G505988 NA other downstream 1372288 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 1606436 40196800 ~ 40203886 (+)

Expression


Co-expression Network