LOC110525905 (LOC106585140)


Basic Information

Item Value
gene id LOC110525905
gene name LOC106585140
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 38621959 ~ 38626155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606403.2
TCCAATGAAAAAGATGGTTGGTGACTTTCTCGcagttgtgggtgtgtgtggttgtgagtgCGTGCAATCCAATCAACAAAATGCTTCGACGAGACTGAGACGGGAGTACCTGTATAGGAAGTCCCAAGAGGACAGGGTGCGGACGATTGAGGAGAAGAAACAGAAGCTGAAATCTGCTCTTGATGCCATTCGTCTCATCCCTACTGaggtttgccgagaagctgtacAGTTACAGAAATTGTTGGAGTATGATGATGAGGGAGCAGAAGGTGTCAGCTCTCACATGGATGATGAGTATAAATGGGCTGGAGTGGAGGATCCAAAGGTCATGGTCACAACATCAAGAGACCCCAGCTCTCGACTCAAGATGTTTGTCAAGGAGGTGAAGCTGATCTTCCCTGGGGCTCAGCGTATGAACAGGGGAGGTCATGAAATTAAAGCTCTAGTACAAGCCTGTAAAGCCAACAATGTTACAGACCTGGTCATCGTTCATGAGACTAGAGGACAGCCAGATGGGCTGGTGGTGTGCCACCTACCTTTTGGACCGACTGCGTACTTCACTCTTTACAATGTGGTAATGAGACATGATGTGCCGGACATTGGAACCATGTCTGAAGCCTACCCCAACCTCATCTTTCACAACTTCTCCTCACGACTTGGCCAGAGGGTTTCCAATATCCTCAAGTATTTGTTCCCAGTGCCTAAAGAGGACAGCAGGCGGGTTATCACATTTGCCAACCAGGAGGATTTTATATCTTTCAGACATCACACTTACAAGAAAACGGACCACAGGAACGTTGAGTTGTCAGAAGTTGGGCCCAGATTTGAAATCAAATtGTACATGATCAAGCTTGGTACCCTAGAAAATGAGGCTACAGCGGACGTTGAATGGCGCCaccactcatatacacacactgccAAAAAGAGGAAGTTTCTCAGCATGGAGTAACATTAGCCACGTCTCAGTGTGCCCCTCTCATTGACAGGCCATGGCCAAAGCAGCCTAACCACATAGTAGTCTAATGTTGTGTTTTCAGTTTTACACACCATACCTCAGATTTGTATTTCATGGAAATATGGCATCAGACATTGAATAATTTCATTGAAACAGACTCTACCAGAGAAGTTATGTATACTACGATTTTCCTAACTCCAAATTTGACTATTTTATATAAAATTAACAGaactaaagaaaaaaatattcttCATAACAAGGCTATTGTTGGCTTTGCTATATGTCTGATGTTTTAGTTATTTACCTATTTTCCAGGGGGCTACAAAAATActctacttttttttaaatggctaaAATGTCAATTTTTCCTTTATCAGCCTCACACTATTATAGACCTAGAATTTTGTACTACATTTGCACTGTATCTGAGGTAGTGACTCGCCCAGAGATGAAcaatatgtaaaaataaaaacagtttcTGGTTTTAA
>TU572962
GGTACTGTTAGTGCATCCGAAAGTTTCTGACACCGACTGTAAGTAAATCTCTCTTAATCAGGTTTCCAATATCCTCAAGTATTTGTTCCCAGTGCCTAAAGAGGACAGCAGGCGGGTTATCACATTTGCCAACCAGGAGGATTTTATATCTTTCAGACATCACACTTACAAGAAAACGGACCACAGGAACGTTGAGTTGTCAGAAGTTGGGCCCAGATTTGAAATCAAATtGTACATGATCAAGCTTGGTACCCTAGAAAATGAGGCTACAGCGGACGTTGAATGGCGCCaccactcatatacacacactgccAAAAAGAGGAAGTTTCTCAGCATGGAGTAACATTAGCCACGTCTCAGTGTGCCCCTCTCATTGACAGGCCATGGCCAAAGCAGCCTAACCACATAGTAGTCTAATGTTGTGTTTTCAGTTTTACACACCATACCTCAGATTTGTATTTCATGGAAATATGGCATCAGACATTGAATAATTTCATTGAAACAGACTCTACCAGAGAAGTTATGTATACTACGATTTTCCTAACTCCAAATTTGACTATTTTATATAAAATTAACAGaactaaagaaaaaaatattcttCATAACAAGGCTATTGTTGGCTTTGCTATATGTCTGATGTTTTAGTTATTTACCTATTTTCCAGGGGGCTACAAAAATActctacttttttttaaatggctaaAATGTCAATTTTTCCTTTATCAGCCTCACACTATTATAGACCTAGAATTTTGTACTACATTTGCACTGTATCTGAGGTAGTGACTCGCCCAGAGATGAAc
>TU572964
GGTACTGTTAGTGCATCCGAAAGTTTCTGACACCGACTGTAAGTAAATCTCTCTTAATCAGGTTTCCAATATCCTCAAGTATTTGTTCCCAGTGCCTAAAGAGGACAGCAGGCGGGTTATCACATTTGCCAACCAGGAGGATTTTATATCTTTCAGACATCACACTTACAAGAAAACGGACCACAGGAACGTTGAGTTGTCAGAAGTTGGGCCCAGATTTGAAATCAAATtGTACATGATCAAGCTTGGTACCCTAGAAAATGAGGCTACAGCGGACGTTGAATGGCGCCaccactcatatacacacactgccAAAAAGAGGAAGTTTCTCAGCATGGAGTAACATTAGCCACGTCTCAGTGTGCCCCTCTCATTGACAGGCCATGGCCAAAGCAGCCTAACCACATAGTAGTCTAATGTTGTGTTTTCAGTTTTACACACCATACCTCAGATTTGTATTTCATGGAAATATGGCATCAGACATTGAATAATTTCATTGAAACAGACTCTACCAGAGAAGTTATGTATACTACGATTTTCCTAACTCCAAATTTGACTATTTTATATAAAATTAACAGaactaaagaaaaaaatattcttCATAACAAGGCTATTGTTGGCTTTGCTATATGTCTGATGTTTTAGTTATTTACCTATTTTCCAGGGGGCTACAAAAATActctacttttttttaaatggctaaAATGTCAATTTTTCCTTTATCAGCC

Function

NR:

description
U3 small nucleolar ribonucleoprotein protein IMP4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606403.2 False 1443 mRNA 0.43 9 38621959 38626155
TU572962 False 803 lncRNA 0.38 3 38621993 38623157
TU572964 True 728 lncRNA 0.38 3 38622068 38623157

Neighbor

gene id symbol gene type direction distance location
araf LOC106585138 coding downstream 2098 38590907 ~ 38619861 (-)
tbx3b LOC106584937 coding downstream 90747 38526426 ~ 38531212 (-)
tm2d2 NA coding downstream 101119 38498656 ~ 38520840 (-)
LOC110525897 LOC106585133 coding downstream 386942 38024018 ~ 38235017 (-)
LOC118965104 NA coding downstream 583412 38038495 ~ 38038547 (-)
rabl6b LOC106585139 coding upstream 9271 38635426 ~ 38664625 (-)
nsmfb nsmf coding upstream 300744 38926899 ~ 38967540 (-)
LOC110525916 ccdc183 coding upstream 379056 39005211 ~ 39015501 (-)
pnpla7b LOC106585146 coding upstream 390537 39016692 ~ 39033431 (-)
ercc6l2 ercc6l2 coding upstream 464076 39090231 ~ 39106621 (-)
G504590 NA non-coding downstream 13307 38545005 ~ 38608652 (-)
G504603 NA non-coding downstream 39063 38548483 ~ 38582896 (-)
G504615 NA non-coding downstream 48205 38573331 ~ 38573754 (-)
G504476 LOC106585134 non-coding downstream 131976 38481730 ~ 38489983 (-)
G504658 NA non-coding upstream 53948 38680103 ~ 38683577 (-)
G504971 NA non-coding upstream 143612 38769767 ~ 38770008 (-)
G504974 NA non-coding upstream 147901 38774056 ~ 38774498 (-)
G504975 NA non-coding upstream 148803 38774958 ~ 38775263 (-)
G505019 NA non-coding upstream 229301 38855456 ~ 38857445 (-)
G503159 LOC106580514 other downstream 1285407 37331484 ~ 37336552 (-)
G503064 NA other downstream 1381022 37239844 ~ 37240937 (-)
vamp8 LOC106585118 other downstream 1556970 37050701 ~ 37065030 (-)
hk2 LOC106585103 other downstream 2104691 36507843 ~ 36569143 (-)
G501142 NA other downstream 2854030 35765366 ~ 35767929 (-)
G505472 NA other upstream 579723 39205878 ~ 39206269 (-)
G505493 ptch1 other upstream 606538 39232693 ~ 39233210 (-)
aopep cssa24h9orf3 other upstream 795513 39313471 ~ 39434971 (-)
G506641 NA other upstream 997530 39623685 ~ 39624344 (-)

Expression


Co-expression Network