si:ch211-102c2.4 (LOC106585141)


Basic Information

Item Value
gene id si:ch211-102c2.4
gene name LOC106585141
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 38629046 ~ 38637996 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980069.1
TTGGCCATTTCCTGACATCTTCCATAGCAGAGCCTGACATACTTTCTTCTGTGTTTTACTTCATATTTTGACTCCAGCAACATTCAGCAACAAAAATGCTTCGACTGACTACATTGGTTTTCTGGCTTGCTGGCATATGTGATGGTGTGCAGAGACTGACCTGTCCTTATGAGCTAAAGGACGAGGACCTCCCTAGGGTGTGGTGTAAGGAGACGTCCCCACAGTGCTGTTCAGGCTTCAGCTTCAGCAGGGAGAGCCAGTCTTTGGATGCAGGAAGGCTGAAGGTGACTCAGGGTGTTGGCTCCTTCATTGTGGATGTCCAGTGCCTGGCCCAGGGAGAGGGAATGTATTGGTGCGGTGTGCTGAGCAGCAATAAAACCATCATCAAACTGGCTGAGGAGTACTTCTACAGTGGTTCCTACGTTTGGGACATTCTTCGCTGGATTCTGATGCCTCTGCTCCCCATGGCGATCATCTTTTCTTACTGTTACTTAAAAAGAAAAGACCAAAACAAGAAGGAGAAGGGAGTATACATGAACATCACTATGATCTCAGATCTGGCACAAAATAATCCACATACTGAAGAAGAGATAACTGAGCTGGAATGATGGACATTGCCAAAGGACACACCAAATGCTAAAGGGGCTTTCAATTCTATGCTACAAAACGAGACAGCCATTACAGCTTTTTACAGTTACACAACCTGAAGTACTGTACCTCAAGAAAAGGTATTAGTCCTCCTGGTGGTTACAAGAGCTAAGTGAAAAGAAGCTAAACCAATAGTTTGTCGTAGCTTTCATGATTTTCATAATGGAAAAAAAAGGTAAATGCCATCTATGAAGAAATACGTTTGCATTTATTAGGACGAGCCAAACACAGGTTCACATCCAGTGAAAATATGGAAACATTTCATGGGATGAAAATAAATATCAATTTACCTTTCTATACATTATTTTCTTATTGTACAACATAAGCTTCATGCGCCAATTGGAAATTTGCTCTTAGCATTATTTTTTGCCTCATGAACCACCCATTGAATGACAACAATAGACAGACAATGCAGCAGTACTTTAGATTAATGCATAGTTTCATATTTTGAAagatacattttacattttaaacCATCGAATGTAATCTAACGTGACAAGTATATAATCCATCTAAAAGTCTGTTGTCTCGTCAGTTAATAAACATACCTTGTAACATTGTCGAAATAAAAGcttcatgtactgtatatcattCCTGAATACCACCTGCATTTATTTTCTTGTCTGATATGAATTCATGCTGCTTTTAATTCAATTGATGGGTGTCTGTCATCATTACAGAATAGCATGGTATCGTTGCAATGTAAACAGATTGCAATGACTGCTTTCATCTGCAGTGATGCAATTACATACTAATTTTGGTGATGCAACTAGTCAACCTGCTTTAGCACACTAACACATGGGACACACGTATACATTGGGAGCGGGCAATATAAACCTTATGTTTAAGTCAAACCAGATGACAATCAACCACATCGTACGCATTAATCAATCCCATTTGTATTTCCTCGTCAGGAAAATATGACTAtgataaataccatagatgagaGTAGTACTAATGAAGCACTATAATAGTCGACAGGTTTCAGTCCAAAAATAGCTGCATTCAATGTTAGTAGGCTGCCATTGAAATATCTCCAAGAACTACAGCTATTGCAAGAAATTGTATTTCAAATGGACATCTGAAGCACAGGTAAAGTTCATGGAACCTCATGAGACAGACATGATAACAGTTATGTAAAGTTAACACACGAACAGTAGGAGCCTTGGAATGCAGCAAAAGATTGagaaagaatatatatatatatatatactagcaGTTCATTATTTAAGTTACCTTATTGTGTAAGCAGTTTATGACTTTAGCAATCATTCATTTCTAAACTGGTATGAGTCCCTTAACAACATAAATCAAGATTATTATCTAAAAGCAAATGTTCACATATATTGTGTAGTGTGCTGCCAAGATTTTGGTACTGGCTTCAGCAATAAACAAAAAAAGACAGTATATGATACATTTCAGAGTGACATAACATTACAGTTCACCAATAGAAGGCACCAGACATATCACATCTGTCTGAAGCTACTACCTGTCAGTTCTGATGCATTACAGTCTTGACTTCCCGTAAGAACACTTGACACATGGTTGATAAGGATTGCAGACATGTACGTGTGTTGTATGTCACTTCCTTTTAAGGCATCTAATTAAAACACACTGAAATGTGTACTGAGGCGGTAGAAAAGGTGACAAaggctacatcccaaatagcaccctattccttatatatatatatatatatatatatattgtgcatagggaataaggtgccaatttgggatgcagacaaacTGAAAACTACAGTCACTGTAAAATGGTGCATTGGGGGACCTGTTCCATTGTGGGAGTGGAGGGGAGTAAATGATCAAATGGAGTGAGATAGTACATTGTCAAAAATAGAAAAAGTCAATTAAAGCAGCAAAACTTTCAACAACCATTACATCACTGAGTCGGAGAAACAAAACCAGTGGATCAAAGTAAGAGGACAATCTTCAATATGTGAAATATGACCATCAAGCATGTATATGCTCCACTATGTAATATCAACACTGTCAAGCAACCATCAACACTGTCAAGCAACCATCACTTTACAGGAATATGCTCTCAAGCAATTCTTACACCAAATAGAGGACATTCAGACAAAAACGTTAGCCCTGCCAAGCCCATTTGGAGTGGTTCACTTCAGGAGAGCATCATTTAAAAagttaaaataaaatagtaaGCAAACACACATTTTAAGTTAAACGtctgaaaataaaaaaagtaaaatCTTTCCTTAGTGGCTCTACTAATTATCATACCCAGTAGTGATCATATAGTTTGTATCACACCACAGTGAGTGTCAGTCATCTCCTTCCTGTTTCTCCTCAAAGGTTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106585141 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980069.1 True 2983 mRNA 0.38 5 38629046 38637996

Neighbor

gene id symbol gene type direction distance location
cd53 cd53 coding upstream 38682 38584458 ~ 38590364 (+)
LOC110525902 LOC106585137 coding upstream 46145 38566569 ~ 38582901 (+)
lman2lb LOC106585136 coding upstream 66765 38556641 ~ 38562281 (+)
htra4 LOC106585134 coding upstream 131161 38481640 ~ 38497885 (+)
LOC110525893 LOC106585131 coding upstream 721883 37869319 ~ 37907163 (+)
LOC110525907 NA coding downstream 26672 38664668 ~ 38666501 (+)
traf2a LOC106585142 coding downstream 30483 38668479 ~ 38683603 (+)
LOC110525909 LOC100380751 coding downstream 108658 38746654 ~ 38857447 (+)
b3galt8 LOC106585144 coding downstream 220013 38858009 ~ 38860997 (+)
zgc:162952 LOC100195200 coding downstream 227598 38865594 ~ 38892231 (+)
G503936 NA non-coding upstream 281359 38347186 ~ 38347687 (+)
G503757 NA non-coding upstream 531556 38090805 ~ 38097490 (+)
G503629 LOC106585132 non-coding upstream 707492 37916220 ~ 37921554 (+)
G503598 NA non-coding upstream 720020 37907355 ~ 37909026 (+)
G503487 NA non-coding upstream 846655 37782067 ~ 37782391 (+)
G504126 NA non-coding downstream 33310 38671306 ~ 38671690 (+)
G504715 NA non-coding downstream 132471 38770467 ~ 38770724 (+)
G504719 NA non-coding downstream 136477 38774473 ~ 38774817 (+)
G499111 NA other upstream 4477309 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 5163991 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 5308698 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 5464785 33135282 ~ 33165186 (+)
polk polk other upstream 5700195 32926258 ~ 32936958 (+)
fancc fancc other downstream 631963 39269915 ~ 39312098 (+)
LOC110525927 smim15 other downstream 1036016 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 other downstream 1096788 39734703 ~ 39750180 (+)
G505988 NA other downstream 1324656 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 1558804 40196800 ~ 40203886 (+)

Expression


Co-expression Network