ercc6l2 (ercc6l2)


Basic Information

Item Value
gene id ercc6l2
gene name ercc6l2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39090231 ~ 39106621 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606433.2
AACTAGATAAACAGCAGAACGCTTGCTAGCTAGCGACGCTGACAAGTACGGGCAAGATATGTCTCAaagatctagctagctagctatacataTTACTGCCCCGTCAAAATACTAAATAAATTAGTTATCGAGTGTAAATTTAGCTAACTAACTAAACGCTATTTTACTGTCTGAGCAATGTCTTTgccagacagtgaagagacttgTCTTACTAGTTAACGTGAGCTTGTCTGCTTATGCTTTAGCTAGTTACAGCTTGCCACAATGCTTTTGGATGATGGCTTCAACTTCCACAGCTGACATAAAAGTGTGGCATGAGGGCGACAGATGCCTCGCTCCCAGCCTCAGAGATGGCACCCTACTACGAGAGGGGACAATCCAGAAACTCCCTTCCACTTCTCATGGTGAGGACATGGCATTGGTGAAGTTCACAGAGCAACATGatgaagatgaagaagaggaggcagTCTTTCCAGTCTGTAAACTCCAGAGACCAGACGCAAACCAGTCGTCCACCAGTGTAGTGTCTGCCCAGGAGAAGCCTCTATTCCTCTGCAGCCAGACACCCCCCGGGCCATCAGAGCCCTTGGTGTTGTCACAGAGTGGTGTGGCAGTCCCATACACCATCAACAGGTACCTGAGGTACTACCAGAAGGAAGGGATCCAGTTCATCTATGACAACTATGCCCAGTCGAGAGGATGTATCCTGGGAGATGACATGGGTCTGGGCAAGACCATTCAGGTCATTGGTTTCCTGGCTGCTGTGCTGGGTAAAACAGGGACATGGGAAGACATTGAGAACAACAGGCCTCAGTTTCTTCTTACTCAGATCCCCACACAGCGAAGCAAACCCCGAAAGGTGTTCTTGATTGTGGCCCCTCTGTCGGTGCTGTACAACTGGAAAGAGGAGCTGGAGACGTGGGGTCACTTCCTGACCGTTGTAGTCCACGGTctgaggaaagaggaggagctgGCTCGCATCCGGAGGGGACGCTCTGAGATCGCCCTCACCACCTACGAGACCCTACGCCTCTATCTGGAGCAGTTTAACAGCATTGACTGGTCTGCTGTGATAGTGGACGAGGCCCACAAGATCAAGAACCCCAACTCCCAGATCACTGGGGCAATGAAGGATCTGAGGTGTCCGGTCAGAGTTGGCCTCACTGGCACAATCCTGCAGAACAACCTGGACGAGCTCTGGTGTGTCATGGACTGGGCCATCCCTCGTTGCCTTGGCAGCCTGGGTAACTTCAAGAATATGTTTTCGGACCCCATCGAACTGGGGCAGAAGCACAGCGTAACTAAGCGGGCCCTAGCGACGGGCAGGAGGGCGGTCCGGGCCCTGGCTGCGAAGCTCTCCCATTGGTTTCTCCGGAGGACCAAGGCTCTTATTAGAGAGCAGCTGCCCAAAAAAGACGACAGGGTGGTGTACTGTTCGCTGACGTCGTTCCAGCAGACTGTGTACCAGGCGGTACTGGACACGGAGGACGTCACCCTGCTCTTGCGCTCCTCAGAGAAGTGTGACTGTCACAGTGGACACTCCCGCAGGAAGTGCTGCTACAAGGTGAATGCTCGGGGTGTGCGTGTGACAGACCTGTACTTCAGTTACTTGGCCATTCTCAGGAAGGTGGCCAACCACGTGGCTTTGCTGCAATCCAAGTGGAACACCAGCAAAAAGCAGGAGCAGTATGTGAATGAGATCTGTGAGAAGGTGTTCCAGAAGTTTCCTGACTTCACAGAGAAATGCAAGCAGGCAGCATTTGAGGCCATGTCAGACCCCATGTACAGCGGAAAGATGAAGGTTCTCCAGAGGTTGTTGAAACATTACACGCAGAGAAAAGACAAAGTGCTATTATTCTCCCTCTCCACTAAGTTGCTGGACGTGCTGGAGAGCTACTGCATGGCAGATGGGCTGGAGTATAGCAGATTGGATGGCAACACCAAGCCCAGAGAGAGGCTGAAGATCGTCAAAGAGTTCAACAGCTGCCCTGACATTAACCTCTGCCTTGTCTCCACCATGGCAGGGGGTCTGGGCCTGAACTTTGTGGGGGCCAACATTGTGGTCCTGTTTGATCCCACCTGGAACCCTGCCAATGACCTGCAGGCAATTGACAGGGCGTATCGTATAGGCCAGTGCAGGGACGTGAAAGTGTTCAGACTCATCTCTCTGGGAACAGTGGAGGAGGTCATCTACCTGCGCCAGGTCTACAAACAGCAGTTGCAGTCTTCTGTGATGGGTAAGGAGAGTGCCCGGCGGTACTTTGATGCAGTGCAGGGGTCCGACGACCAGAAGGGGGAGCTGTTTGGGATACAGAACCTCTTCAGGCTGCAGACCCAGGGGACCTGCCTCACCAGGAGAATACTGGAGCGGGAGGGACGAGTGGAGGTAGGAGTAATGACGTCCAGCACCCAcacaggggaagaggaggagaggaagagcgagagcGAGGCTGGGGAGGTTTCCGCAAGGGACCACTGTGAACTGGGCAATGGAGGGGCGATTGGCAGTGTAGGGCCCTCGAGGATCCCCAGGGCAACAACCAGGGGGGTGCTGGACTTCAGcagtggcagtgaggaggagggggaacagGGGGGCAGGAGTAAGGTGGAGAAGGCGAACACTACCCTTCCTGGCCGACTCAGTCTCCTTCAGCATGGCTTCTCCAGGTTGCtccagaggtcaggggtcagggctgGATCAGGGTCAGAATCAGGGGAGCATAGCCAGAGTGAGGGGGGAAGGAGTGATTCTGAGGAGGACAGTGATGAAGACACTTCTGCTATGGCACCAAAGGGCCTCAGCACCGCAGGGAGTGGAGGCCCCCAGACCCCTACATTGGCCCCCAAGGGTGGGAACCACTTGGATGCAGCTCCTCTGAAGAACGACTGGGACGTCTCCAGTGgctctgagagagaggaagaaaggaatggAGGGAGATGGGATGGACAGAGGGGGCGAGACCATGATCCTGTTACACTGTCAGGAGAGAGTGATGACATGGGGAGAAAAATACCAAATCTGAAACAAGGaataaggaggaagaggagggtggaggaggacagtgatgATGATTCACCCCCCTCCAGTGGAAGCAAACGATCTAACACTAAAACTCCAGTTTCCAGAATGCACCAGGTGGTGTTTGACTCTGAGTCTGAGGACATAGACATTGAGGAGCTAATCAGACCTTGTGCACAAACTCATGTGCTTAAGAGACCCCCAGCACacctgaggaggagggagatggggagagatggtggtagtaagagagagaccagcaacAGACCAGTAGACCAGAGTAGAAGAACCAGACAAGCAGAGGACATTGAGACTTTTACCTCCTCAGACGAAAACCACACTCCAGTCGAAAGAGTCCGATCTGTTACAGCCCCACAGAACCACAATCATGGCCCAGGCCCACAGACAGACCAACACGGAGCGAGGGCGTTTACAGGTCTGAAAAACCCAAAAGTGAACCAGACTGTCCCTTCTGCCAAAGGACCGCCCTGTGGAACGATTGACAATGTGTTAGgtggTGTACGGGAGGTGGTTTACACCCACTCTAACCAACATATGGTGGGCGGGAGCAAGGCCGAGGAGCGAATCAGCAGAGCCGCTCTCAGAGACGTGTTTGAGCGCAGGAGGTTCTCCCAGCTTCCAGCCAATGAACTCCGGGACACACAGAAGACCCAGCCTGAACACACTCCACCATTCCATACTTCCCATAATGATGTTGGTTGGGTGGGAGCAGTGCACAGACCCAGTGTGGAccacccagtcacacacaccatcaggaGCGTCCACCACCCCACCCAACACACCACCGTCATTATCGGAGAGACCCCCGGAACCATCCGAAGGCAGCAGCTGGAGGAGATGGCGTGTGTACTTGGACCTGTTTCATTGAGACAGTTTGCTGAGGAGGTTCTGAGGAGTACCTCTGCCCAGAGACTGGCTCAGCTACGACAGTACTACACTGACCAGGGCCCTGAGGTGGCTTCCACCATCAGGGAGAACTTCGCTGAACCACACACAGCAAAGCCCAAAGTTGACAGGAcaaccccttcctcctcctctacaacCAAACACAGACCCAACTCCAAAAGGAACCAGAGAGTTGCTCTAGAACCCCAAGCAGAACCTAGAACCCGACATAGGTCCGTTCCAGAACCCCAGAGGGATGTTCCCTCTTCTGAGGAGCAGAGGGTCCGGAACGCCAGAGGAGGGAAGAAGAAGAGTGGTAATAGTGGAATGTCCAGAGCTGCTCAGTGCTCCAGCTCAGACCTGGACAATAGTAGGAGTAGTCCTCTGGGACCAGGGGCCTCTAGAGCTCAACccgtttcctcctcctcctcttcttcagctCTCAGCCATCCCCAGGCTAAGCCCACAGCCAGCCCTCCGAGAGGGAGGAGCAGCCTGCTGTCCTCCCCCAGGAAGAGTGAGGTTGTGGGGAGGCAGCGGTACAGAGCTCAGCCTTCCTCTCCCCCCAGCCAGCAGGTCCTCCTCACAGAGCTGCTAGGAGACACCTCCATCCTGGACGACCTGCTGCGACCCAGAAGCAAGGCCTCCTCAGAGCCTCAGACGGGCTTCCCAAAAACCCCTACTTCACAGGCTGTCTTTACACCCACTTCTCACTCTGCCACACCTGCCTCCTGTCACCCTACAACGCCTCCCAAACCGCCCAGCACACCCCACCCTCGGCCCCTGACAAAATCCGTCCCAGGCCCTTCTTCTAGTACTACTCGTCCCTCTCGATCCATCACCACACCCCTCACACACCCCATTACACCACTTTTCTCTCCAGCCCCTGAGAGGTCAAAGAACAGCCACAGAGacttctgggacattttggaggaGGGTAACGAGGAGAGGATCAACAAACTGACGGACCTGTCGGAGgtagagagggtgtgtgagagtGCTAGCGTCAGGGCCAGAGgaggaacagggggaggagaggagaaagggaacaCGTCACTTTGGAAGAGGAACGACAAGTTCCTGTGGAAGAAGTGATTCTGGGGGAGACATGACGACATGTATTTTGCGTTCGACTTTTATTATTCTTATGCTTTTTTTTAAACGAAAAATGTAATCGTTTTGGTTACTGTAACCTATCCTGAAATTATAGATCGAtaagtacgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
ercc6l2 Predicted to enable ATP binding activity and hydrolase activity. Orthologous to human ERCC6L2 (ERCC excision repair 6 like 2).

NR:

description
DNA excision repair protein ERCC-6-like 2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606433.2 True 5173 mRNA 0.54 20 39090231 39106621

Neighbor

gene id symbol gene type direction distance location
pnpla7b LOC106585146 coding downstream 56800 39016692 ~ 39033431 (-)
LOC110525916 ccdc183 coding downstream 74730 39005211 ~ 39015501 (-)
nsmfb nsmf coding downstream 122691 38926899 ~ 38967540 (-)
rabl6b LOC106585139 coding downstream 425606 38635426 ~ 38664625 (-)
LOC110525905 LOC106585140 coding downstream 464076 38621959 ~ 38626155 (-)
aopep cssa24h9orf3 coding upstream 206850 39313471 ~ 39434971 (-)
dock8 LOC106585156 coding upstream 333931 39440552 ~ 39517123 (-)
LOC110525926 zswim6 coding upstream 512661 39619282 ~ 39670076 (-)
ndufaf2 ndufaf2 coding upstream 572873 39679494 ~ 39715116 (-)
LOC110525929 LOC106585162 coding upstream 645105 39751726 ~ 39778538 (-)
G505102 NA non-coding downstream 112867 38977033 ~ 38977364 (-)
G505070 NA non-coding downstream 165420 38924562 ~ 38924811 (-)
G505069 NA non-coding downstream 165774 38924221 ~ 38924457 (-)
G505053 NA non-coding downstream 185369 38904661 ~ 38904862 (-)
G505050 NA non-coding downstream 189870 38900124 ~ 38900361 (-)
G505429 NA non-coding upstream 34064 39140685 ~ 39140930 (-)
G505458 NA non-coding upstream 76360 39182981 ~ 39183403 (-)
G505459 NA non-coding upstream 77674 39184295 ~ 39184678 (-)
G505460 NA non-coding upstream 79373 39185994 ~ 39186194 (-)
G505462 NA non-coding upstream 81890 39188511 ~ 39188731 (-)
G503159 LOC106580514 other downstream 1753679 37331484 ~ 37336552 (-)
G503064 NA other downstream 1849294 37239844 ~ 37240937 (-)
vamp8 LOC106585118 other downstream 2025242 37050701 ~ 37065030 (-)
hk2 LOC106585103 other downstream 2572963 36507843 ~ 36569143 (-)
G505472 NA other upstream 99257 39205878 ~ 39206269 (-)
G505493 ptch1 other upstream 126072 39232693 ~ 39233210 (-)
G506641 NA other upstream 517064 39623685 ~ 39624344 (-)

Expression


Co-expression Network