trnaa-ugc-17


Basic Information

Item Value
gene id trnaa-ugc-17
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39288589 ~ 39288662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaa-ugc-17
gtcccgtgtggctcagttggtagagcatggtgcttgcaatgccagggttgggggttcgattcccacgggggaca

Function

NR:

description
Deoxyribonuclease gamma precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-ugc-17 True 74 mRNA 0.59 1 39288589 39288662

Neighbor

gene id symbol gene type direction distance location
ptch1 ptch1 coding upstream 53715 39155476 ~ 39234874 (+)
hsd17b3 hsd17b3 coding upstream 220199 39042158 ~ 39068390 (+)
LOC110525918 LOC106585148 coding upstream 253395 39033662 ~ 39035194 (+)
zgc:162952 LOC100195200 coding upstream 396358 38865594 ~ 38892231 (+)
b3galt8 LOC106585144 coding upstream 427592 38858009 ~ 38860997 (+)
LOC110525923 NA coding downstream 113875 39402537 ~ 39405261 (+)
cbwd cbwd1 coding downstream 233061 39521723 ~ 39526646 (+)
foxd5 LOC106584956 coding downstream 245274 39533936 ~ 39535789 (+)
pgm5 LOC106585157 coding downstream 247982 39536644 ~ 39583427 (+)
LOC110525927 smim15 coding downstream 385302 39673964 ~ 39680031 (+)
G505255 NA non-coding upstream 58554 39229771 ~ 39230035 (+)
G505253 NA non-coding upstream 61418 39226877 ~ 39227171 (+)
G505251 NA non-coding upstream 65482 39222739 ~ 39223107 (+)
G505250 NA non-coding upstream 66221 39222013 ~ 39222368 (+)
G505249 NA non-coding upstream 67591 39220461 ~ 39220998 (+)
G505206 NA non-coding downstream 24488 39313150 ~ 39315080 (+)
G505314 NA non-coding downstream 81758 39370420 ~ 39370649 (+)
G505316 NA non-coding downstream 82748 39371410 ~ 39371666 (+)
G505329 NA non-coding downstream 100099 39388761 ~ 39389035 (+)
G505347 NA non-coding downstream 128204 39416866 ~ 39417144 (+)
G499111 NA other upstream 5136852 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 5823534 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 5968241 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 6124328 33135282 ~ 33165186 (+)
polk polk other upstream 6359738 32926258 ~ 32936958 (+)
LOC110525928 LOC106585161 other downstream 446122 39734703 ~ 39750180 (+)
G505988 NA other downstream 673990 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 908138 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 968405 40256994 ~ 40259050 (+)

Expression


Co-expression Network