LOC110525923



Basic Information


Item Value
gene id LOC110525923
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39402537 ~ 39405261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_005052100.1
GTATTTGGGGACAAAGAGGAAGCGGCCTACACAAAGGGGGCAGAGAATGGAGTTGGAAGAGTGTGTTATGAAgtgtgagaagagagagaaatacctGTGTGATTACCTGTTGTGACCTGGACTGTCTGATTACCCCACTTGTGTACAGGTTTGGTTGAGGACCCGAGTTTTAGGATTACCCCTGAAGAACGGAACAGACAATGAGAACGGATTGTGGACTGTGAAACGGATCGCAAGGGACCTGGTGGGACCTCTACCCAAGAGCAACCGGGGGCACCAATACATCCTGGTGATTCTGGATTATGCCACCTGGTACCCAGAAGCCATTCCCCTGCGCACCATGGCCACCAAGGGAATTGCACACCGATGGGTTGGTGGAAAGATTCAATCAAAACCTGAAGCAGATGCTAAAGAAGGTGATGGAGGTGGACGGAAGGAATTGGGATCAGCTGCTACCCAACCTGATGTTCTCGATCCGAGAAGTGCCCCAAGCGTCAACAggactctctcccttctctcccacaGATCAGGTGCAGCCCATGGAAATGCCAATGCCCTCTCCAGGAGGGACGCTCTAGGGAGCTGGACCGCCACTCCCTCCCAGTGTGGCAGACAGCAGCGTGAGGTGAGTGGTTATTGAAGGGATATCTTGCAGCCTGCTGGCTCCACCCCCGAGTCTTATATGGACTTCCTGCCCCAATGAGGCGAGCCTGTTGCTCATTAAGCCAGGGAGTACTTGGGGATAAAAGAGGAAGCAGCCTGCACAAAGGGGCAGAGAACGGACAGGGAAGCATgtagagtgagaagagagagaaatatctGTGTGATTACATGTTGTGACTTGGACTGTTTGATTACCCCATTGTGTACCGACTCAGTTTGGCTGAGGACCCGAGTTTTAGGATTACCCCTGGAGAACGGAACGAACAACAAGAACAGATTGTGGACTGTGGGTTGGTGAATTCCCCCTTTTCCCCAGTGTGCAAAACTCCCTAATAAACTCCCCATTTGCA

Function


NR:

description
PREDICTED: uncharacterized protein LOC109102864

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_005052100.1 True 1013 mRNA 0.52 3 39402537 39405261
Loading

Neighbor


gene id symbol gene type direction distance location
fancc fancc coding upstream 90439 39269915 ~ 39312098 (+)
trnaa-ugc-17 NA coding upstream 113875 39288589 ~ 39288662 (+)
ptch1 ptch1 coding upstream 167663 39155476 ~ 39234874 (+)
hsd17b3 hsd17b3 coding upstream 334147 39042158 ~ 39068390 (+)
LOC110525918 LOC106585148 coding upstream 367343 39033662 ~ 39035194 (+)
cbwd cbwd1 coding downstream 116462 39521723 ~ 39526646 (+)
foxd5 LOC106584956 coding downstream 128675 39533936 ~ 39535789 (+)
pgm5 LOC106585157 coding downstream 131383 39536644 ~ 39583427 (+)
LOC110525927 smim15 coding downstream 268703 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 coding downstream 329442 39734703 ~ 39750180 (+)
G505329 NA non-coding upstream 13502 39388761 ~ 39389035 (+)
G505316 NA non-coding upstream 30871 39371410 ~ 39371666 (+)
G505314 NA non-coding upstream 31888 39370420 ~ 39370649 (+)
G505206 NA non-coding upstream 87457 39313150 ~ 39315080 (+)
G505255 NA non-coding upstream 172502 39229771 ~ 39230035 (+)
G505347 NA non-coding downstream 11605 39416866 ~ 39417144 (+)
G505348 NA non-coding downstream 12829 39418090 ~ 39418322 (+)
G505349 NA non-coding downstream 14001 39419262 ~ 39419488 (+)
G505354 NA non-coding downstream 19538 39424799 ~ 39425157 (+)
G505356 NA non-coding downstream 21407 39426668 ~ 39426903 (+)
G499111 NA other upstream 5250800 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 5937482 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 6082189 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 6238276 33135282 ~ 33165186 (+)
G505988 NA other downstream 557391 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 791539 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 851806 40256994 ~ 40259050 (+)

Expression


LOC110525923 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110525923 Expression in each Bioproject

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LOC110525923 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network