ndufaf2 (ndufaf2)


Basic Information

Item Value
gene id ndufaf2
gene name ndufaf2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39679494 ~ 39715116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980091.1
TGGACAGCTCTCTTCATGGACGTCATGTGCTGGGCGGGCGAAGCAACATACAGCTCAGAGCGAGAAACAGGGAGGATTGTTCGGGCCAAGCGGATGGTGGTGGCTGTTAACCCTACAGAGTTTGAGTACCTGGAAGGCAACATACCCTCAGAGTGGGATGCTTGGATCCGAGGCAGACGGAAGCAGCCCCCCTCCATTGAGGAGCTGGTGAAAAACCAGCACTACAGGGAGCACATCAAAGGAAAGGCGAGGGAGGTGGATGAGAGAGAGCTGGCTCTGCAGGCTAAGGAGTACGAGGAGGGCCTGGTGGCTCGGCCTGCTCAGACCATAGCCAAGGGCCACGCCGCCGCCACTAGCTTCGGCCAGCCAGAGACCAGTGAGGAGCCTGTCAGTACAGCCAACACATTCCAGCCTGGTTCCTGGATACCCGCAGCCAAGaaatagccacacacacacgctcactggGTCATGATACCAGTACTGCGATACTGGATTTTccatggtaaaaaaataaaaacatgaagcAAACTGAACTCCTGCAGTTGTGTGATTATAGTTTGGAAAATAAACAATTACTCTGGGTAACAACAGAAGGCTGTGTGTTTACAAGATTAGAACTGTTTTTCTGCTTCATGTTTTGTTCCCTTGCCATGGTACTTCTgagtatcgcgatactggtaCCTAACACACAATGACACGATGCT
>XM_036980090.1
ACAAGCATCCTTCAAACCTACGTATAAAAGGGAATCCATCAAAGAAACAATGGAATAGTGTTCTGATGGGATGATAATTTGGCCAACTTTCCCCCTCATTGTTGACTCTGTCCGTCTCAGGCAAAGTGTGTCGTCGAGTCCAGCCTGTCTTGCTGTTAGAAACCCCAACAACTTCCCTCAATATATGTATATTTaaataatttagctagctagcatgactGTTTGTTATGGTTGTTCTAAAGCTAGCAGAGCATAACTAGCTTGGCTAACCATGTACAAATTCAATGTCGTTAGCTACTAAACCAGTTTTGCAAACTTTTTTGTGTACAATAAATCTCTGTGATCTGAATTTTATAAAAGTAAATGAAATCATTTGAATCAGCCAAATTTCACGCTGTCTGTTTTATTTAAACTCATTTAGCAAGCTAGTATAGCTCCAGCCAACAAGGGGTGTGCGCGGCCATGTTGTTACGTCAGGATTTTTGAGACCTCGCTGGCATAACAAGTGCACTGATTGGTTCCTCTGATTCTGCCATCCAATTAAAACATATCTTACTGTTGTCTGTTTTTAGATACGGGAGATTGCATTAACAACAAATCCAATTGAACATGCGTTGATAGGGGAGGTTGTGTGGTGAAAAATACGAGCCCGATAGCTATATCATATTCAATATGAGCAGGATCGGGGGTCTATTACGCCGGAGCTTTGGGGTGATAAAAGAACATGTGGGCACCGACCATTTCGGAAATAAATACTACTGGCAGCCCGAGCAAAAAACTTGGACGGGGAGGATTGTTCGGGCCAAGCGGATGGTGGTGGCTGTTAACCCTACAGAGTTTGAGTACCTGGAAGGCAACATACCCTCAGAGTGGGATGCTTGGATCCGAGGCAGACGGAAGCAGCCCCCCTCCATTGAGGAGCTGGTGAAAAACCAGCACTACAGGGAGCACATCAAAGGAAAGGCGAGGGAGGTGGATGAGAGAGAGCTGGCTCTGCAGGCTAAGGAGTACGAGGAGGGCCTGGTGGCTCGGCCTGCTCAGACCATAGCCAAGGGCCACGCCGCCGCCACTAGCTTCGGCCAGCCAGAGACCAGTGAGGAGCCTGTCAGTACAGCCAACACATTCCAGCCTGGTTCCTGGATACCCGCAGCCAAGaaatagccacacacacacgctcactggGTCATGATACCAGTACTGCGATACTGGATTTTccatggtaaaaaaataaaaacatgaagcAAACTGAACTCCTGCAGTTGTGTGATTATAGTTTGGAAAATAAACAATTACTCTGGGTAACAACAGAAGGCTGTGTGTTTACAAGATTAGAACTGTTTTTCTGCTTCATGTTTTGTTCCCTTGCCATGGTACTTCTgagtatcgcgatactggtaCCTAACACACAATGACACGATGCT

Function

symbol description
ndufaf2 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 10. Orthologous to human NDUFAF2 (NADH:ubiquinone oxidoreductase complex assembly factor 2).

NR:

description
mimitin, mitochondrial

GO: NA

KEGG:

id description
K18160 NDUFAF2; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980091.1 False 704 mRNA 0.52 4 39679494 39697830
XM_036980090.1 True 1421 mRNA 0.45 4 39679494 39715116

Neighbor

gene id symbol gene type direction distance location
LOC110525926 zswim6 coding downstream 9418 39619282 ~ 39670076 (-)
dock8 LOC106585156 coding downstream 162371 39440552 ~ 39517123 (-)
aopep cssa24h9orf3 coding downstream 244523 39313471 ~ 39434971 (-)
ercc6l2 ercc6l2 coding downstream 572873 39090231 ~ 39106621 (-)
pnpla7b LOC106585146 coding downstream 646063 39016692 ~ 39033431 (-)
LOC110525929 LOC106585162 coding upstream 36610 39751726 ~ 39778538 (-)
LOC110525931 LOC106585163 coding upstream 75017 39790133 ~ 39805341 (-)
LOC110525027 LOC106584957 coding upstream 93085 39808201 ~ 39819427 (-)
LOC110525932 LOC106585164 coding upstream 111144 39826260 ~ 39877951 (-)
LOC110525935 LOC106580582 coding upstream 186416 39901532 ~ 39905407 (-)
G506639 NA non-coding downstream 62203 39616938 ~ 39617291 (-)
G505752 NA non-coding downstream 71697 39607572 ~ 39607797 (-)
G505748 NA non-coding downstream 75103 39604097 ~ 39604391 (-)
G505743 NA non-coding downstream 79307 39599927 ~ 39600187 (-)
G505739 NA non-coding downstream 83481 39595797 ~ 39596013 (-)
G506795 NA non-coding upstream 190433 39905549 ~ 39905853 (-)
G506802 NA non-coding upstream 217404 39932520 ~ 39932855 (-)
G506805 NA non-coding upstream 232385 39947501 ~ 39947725 (-)
G506806 NA non-coding upstream 236583 39951699 ~ 39951922 (-)
G506865 NA non-coding upstream 333513 40048629 ~ 40048833 (-)
G506641 NA other downstream 55150 39623685 ~ 39624344 (-)
G505493 ptch1 other downstream 446284 39232693 ~ 39233210 (-)
G505472 NA other downstream 473225 39205878 ~ 39206269 (-)
nsmfb nsmf other downstream 712091 38926899 ~ 38967540 (-)
G506785 NA other upstream 171906 39887022 ~ 39889931 (-)
G507063 NA other upstream 825543 40540659 ~ 40542329 (-)
G507906 selenop other upstream 1705908 41421024 ~ 41461922 (-)

Expression


Co-expression Network