LOC110525928 (LOC106585161)


Basic Information

Item Value
gene id LOC110525928
gene name LOC106585161
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39734703 ~ 39750180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606448.2
ACGGCAGTTACACAGGGAGGGGACTATGAGACTCTTTTTGCAAATTGCTTGAGTTTGACACCCCATTCGTCAAACGCTCACAGCTGACCCACCGGCAAAAGCACTGGAGGAGAAGTAACGTAGGACGGAGTAGTAGGATGCTCTCACAAAATTGGAGGACGGCTACAGGAgctcagagagacatggagtTCAGGGATCTAACGGCCAGGGCCGGACTCTGGTATGAAAACTTCATGAAGAATGCAGACCCCAGGACAGAGGACTGGTTTCTCATGTCATCGCCGCTCCCCCAAACCATAATAATCGTGGCGTACATCTACTTTGTCACCCGGCTGGGGCCCAGACTCATGGAGAACCGCAAGGCTTTCCAACTCAAAGAAATTCTCATTTTCTACAACTTCAGCGTGGTCGCCTTGTCCCTCTACATGTGCTATGAGTATGTGATGTCGGGCTGGGGGACGGGCTACACGTTCCACTGCGACCTAGTGGACTACTCGGACTCGCCGCAGGCATTGAGGATGGCTGGGACGTGTTGGCTCTACTACTTCTCAAAGTTCATAGAGATGTTGGACACAATCTTCTTTGTTCTGAGGAAGAAGAACAGTCAGGTTACGTTCCTCCATGTCTATCATCACTCTATCATGCCCTTTACCTGGTGGTTTGGGGTCCGGTTCGCTCCAGGTGGCCAGGGGACATTCCATGCCCTGTTGAACTGTGTGGTCCATGTCATCATGTACTCCTACTACGGCCTGTCTGCCCTGGGCCCCGCCTACCAGAAGTACCTCTGGTGGAAGAAGTACCTCACCACCATTCAGCTGatcCAGTTTGTGATCGTTACCACCCACATCTGGCAGTACTTCTTCATGAAGGACTGTCCCTACCAGTTCCCCATCTTCATCTACATCATTGGCCTCTATGGCctggtcttcctcctcctcttcctcaactTCTGGTACCACGCCTACACCAAGGGCAAGAGGCTTCCCAAGGTACTTCAGGCCAAAACCTGGGCCCACCCCTACAACAAAACCAACGGCGAAATAACCAACGGGAATGGTTTCCACTGTGACAAGGATAAGTGACAGGAGATCAGTCAATCAGGCTCAGGATCAAGGGTCGATCTCATTTGAATATGAGCCTATTCATGAACTGAAATGGAATTATAAACATGGAATTTATAATTTAGAGtactggggtgtattcactaggaaccaaacggaTAGGTACCTACGTGAATTTGTCTAATAGAAACGGTATTTTTCCATTTGGCGTAAACGGTTTCCATTGCAACAATTTTTGGACTAATGATTTCATCCCAGGTTAGGTATGCAGGAGTTTGGTTTTCCAATATAAAAGTCAGTGCACTATTGAACTCAAAGAGAATTGACCCCTCACCTCTGGACCTTCTGATATTGTtcttttctctctgctacagcaatCTCTAAGAGTTATGAACCGAGGCTCTACTGGACTTTTTGTATTAGATATTTTAAACTTTTATACCTGTGCTTTTCTTTCCTGTTCAGGATGAAAGCACAAGTTcagtgtttttacattttttataaacagATAGTTGATGTTAGACGTGTGTTAGGTTAGCCAATGTTGGGGCAGTTCAGTAGCTTTGTCCCCACCAGCCCAAATTACCTTTGCCGTTTAGAGTTGGTGCTGAACCTCTCTAGCTTAGGCTGTAGAATTCAGCTTTATAATGTGACCTTGATTTCAGCTGGTTTCTATATTTCAATACCTgtactttaaaaaataattttaatacattttctatgCATTTAATTGTAAACAATTTGTATATTCTGCTACTGAAAGTGTAGCAGGATTTTGTCTGTCTTGAGTATGTGAGCCATCCTCCATAGTTGAGGCCTGATGTATTTCCTGGGTCTGGTCACATGGCtgggaaaaactctgggccctaccCATAGTATACCTGTAATGGTGGAAGGATACAGGATAACAATTTTGCCAGTAAGAACCGATGTTTACATGTATACTGAGTGGAGTGTATTggtgttgacccccccccccccccccccccaccttttcATCAATTCTGCACCCATTTCTCTCTGGTTTGAGTCACAGCCTCTACTGGTGCTGAGAAACTTTGGAAGCCAACCTGCTCCTACTGTTAAAGAGCTGTAGGCCTACTTGAATCTCATTGAAATCTGTCTGTATTATGTCCAACAGAAGTGACGGTGTGACATTTGAAGCCAGAGAGAAAAGTGTAGCACTGTTCTTGCAGGGACCGGAGCAGAGTGCACATTTCGCTTTAGCTCTGTCGCAAGCAAAGaacgacacatttaaaaaatatataaaaaaaactgtagCCATTGTTTACCACTGCATGCATATTCGTTTTATATCCACTCTTCCAAATTGAGTTCAGTCCTTATGCCATGCGAATGACAGTTAGTATGCTTTCTCACTGGGTGTGTTCACATTTGTTTTTCGCCTTCGAGCTCTGCTCAACTGAGGACACAGCATTAGCTAAGTGTAGGATGGGCCTCCACAGGTGTAGTATAACCCCAGTGCCTGGGGTGTAGGCTGAGTCCAATAAGCAACAGCGATCTAGCTGATTTGAAATGTATTTGCTGATGTTAGCTCTAGTGTGAGCGTGTTATCCACCATGGGTTACTGTTCAGTGCCTTTGTCTAAGCCCCTCCAGCCATGATGCCGCTAATTTTGTATAAAAACAGTAATGTGTAAAgtaattatttttgtatttatataaaaataaatgctGTTTTATACATCA
>XM_036980093.1
tggacacaccagatactgactggtttcctgGATTTCCCCTCATTGTCTATACGATTTAAAGATGTGGGTCAAAAAGAAAATACAAGTATTATCAGAGTCTTTTGGGGGTAAAGGACAGTCTACCGGTGTCCTAGCTAGCACACAATGTCCTTCGCTAACACCTGCCGAACATCTGGCCTCACCGTCGTTTACAGAACCGTGGGAAAGTAGTACGCAGCAGGCGGGGGTTGAAGGAAACAGTTTACCGTgtcctagctagctacctatccTGCCTGCTGTGTACCGACGCACACAATGTCTTTTGCTCCTGCCTGCCAAACACCTGCCGTCGTTGACAGACCTGCAGGAAAGCAATGCCCAACAGGACGGCTACAGGAgctcagagagacatggagtTCAGGGATCTAACGGCCAGGGCCGGACTCTGGTATGAAAACTTCATGAAGAATGCAGACCCCAGGACAGAGGACTGGTTTCTCATGTCATCGCCGCTCCCCCAAACCATAATAATCGTGGCGTACATCTACTTTGTCACCCGGCTGGGGCCCAGACTCATGGAGAACCGCAAGGCTTTCCAACTCAAAGAAATTCTCATTTTCTACAACTTCAGCGTGGTCGCCTTGTCCCTCTACATGTGCTATGAGTATGTGATGTCGGGCTGGGGGACGGGCTACACGTTCCACTGCGACCTAGTGGACTACTCGGACTCGCCGCAGGCATTGAGGATGGCTGGGACGTGTTGGCTCTACTACTTCTCAAAGTTCATAGAGATGTTGGACACAATCTTCTTTGTTCTGAGGAAGAAGAACAGTCAGGTTACGTTCCTCCATGTCTATCATCACTCTATCATGCCCTTTACCTGGTGGTTTGGGGTCCGGTTCGCTCCAGGTGGCCAGGGGACATTCCATGCCCTGTTGAACTGTGTGGTCCATGTCATCATGTACTCCTACTACGGCCTGTCTGCCCTGGGCCCCGCCTACCAGAAGTACCTCTGGTGGAAGAAGTACCTCACCACCATTCAGCTGatcCAGTTTGTGATCGTTACCACCCACATCTGGCAGTACTTCTTCATGAAGGACTGTCCCTACCAGTTCCCCATCTTCATCTACATCATTGGCCTCTATGGCctggtcttcctcctcctcttcctcaactTCTGGTACCACGCCTACACCAAGGGCAAGAGGCTTCCCAAGGTACTTCAGGCCAAAACCTGGGCCCACCCCTACAACAAAACCAACGGCGAAATAACCAACGGGAATGGTTTCCACTGTGACAAGGATAAGTGACAGGAGATCAGTCAATCAGGCTCAGGATCAAGGGTCGATCTCATTTGAATATGAGCCTATTCATGAACTGAAATGGAATTATAAACATGGAATTTATAATTTAGAGtactggggtgtattcactaggaaccaaacggaTAGGTACCTACGTGAATTTGTCTAATAGAAACGGTATTTTTCCATTTGGCGTAAACGGTTTCCATTGCAACAATTTTTGGACTAATGATTTCATCCCAGGTTAGGTATGCAGGAGTTTGGTTTTCCAATATAAAAGTCAGTGCACTATTGAACTCAAAGAGAATTGACCCCTCACCTCTGGACCTTCTGATATTGTtcttttctctctgctacagcaatCTCTAAGAGTTATGAACCGAGGCTCTACTGGACTTTTTGTATTAGATATTTTAAACTTTTATACCTGTGCTTTTCTTTCCTGTTCAGGATGAAAGCACAAGTTcagtgtttttacattttttataaacagATAGTTGATGTTAGACGTGTGTTAGGTTAGCCAATGTTGGGGCAGTTCAGTAGCTTTGTCCCCACCAGCCCAAATTACCTTTGCCGTTTAGAGTTGGTGCTGAACCTCTCTAGCTTAGGCTGTAGAATTCAGCTTTATAATGTGACCTTGATTTCAGCTGGTTTCTATATTTCAATACCTgtactttaaaaaataattttaatacattttctatgCATTTAATTGTAAACAATTTGTATATTCTGCTACTGAAAGTGTAGCAGGATTTTGTCTGTCTTGAGTATGTGAGCCATCCTCCATAGTTGAGGCCTGATGTATTTCCTGGGTCTGGTCACATGGCtgggaaaaactctgggccctaccCATAGTATACCTGTAATGGTGGAAGGATACAGGATAACAATTTTGCCAGTAAGAACCGATGTTTACATGTATACTGAGTGGAGTGTATTggtgttgacccccccccccccccccccccaccttttcATCAATTCTGCACCCATTTCTCTCTGGTTTGAGTCACAGCCTCTACTGGTGCTGAGAAACTTTGGAAGCCAACCTGCTCCTACTGTTAAAGAGCTGTAGGCCTACTTGAATCTCATTGAAATCTGTCTGTATTATGTCCAACAGAAGTGACGGTGTGACATTTGAAGCCAGAGAGAAAAGTGTAGCACTGTTCTTGCAGGGACCGGAGCAGAGTGCACATTTCGCTTTAGCTCTGTCGCAAGCAAAGaacgacacatttaaaaaatatataaaaaaaactgtagCCATTGTTTACCACTGCATGCATATTCGTTTTATATCCACTCTTCCAAATTGAGTTCAGTCCTTATGCCATGCGAATGACAGTTAGTATGCTTTCTCACTGGGTGTGTTCACATTTGTTTTTCGCCTTCGAGCTCTGCTCAACTGAGGACACAGCATTAGCTAAGTGTAGGATGGGCCTCCACAGGTGTAGTATAACCCCAGTGCCTGGGGTGTAGGCTGAGTCCAATAAGCAACAGCGATCTAGCTGATTTGAAATGTATTTGCTGATGTTAGCTCTAGTGTGAGCGTGTTATCCACCATGGGTTACTGTTCAGTGCCTTTGTCTAAGCCCCTCCAGCCATGATGCCGCTAATTTTGTATAAAAACAGTAATGTGTAAAgtaattatttttgtatttatataaaaataaatgctGTTTTATACATCA
>TU574282
AGCTGACCCACCGGCAAAAGCACTGGAGGAGAAGTAACGTAGGACGGAGTAGTAGGATGCTCTCACAAAATTGGAGGACGGCTACAGGAgctcagagagacatggagtTCAGGGATCTAACGGCCAGGGCCGGACTCTGGTATGAAAACTTCATGAAGAATGCAGACCCCAGGACAGAGGACTGGTTTCTCATGTCATCGCCGCTCCCCCAAACCATAATAATCGTGGCGTACATCTACTTTGTCACCCGGCTGGGGCCCAGACTCATGGAGAACCGCAAGGCTTTCCAACTCAAAGAAATTCTCATTTTCTACAACTTCAGCGTGGTCGCCTTGTCCCTCTACATGTGCTATGAGTATGTGATGTCGGGCTGGGGGACGGGCTACACGTTCCACTGCGACCTAGTGGACTACTCGGACTCGCCGCAGGCATTGAGGATGGCTGGGACGTGTTGGCTCTACTACTTCTCAAAGTTCATAGAGATGTTGGACACAATCTTCTTTGTTCTGAGGAAGAAGAACAGTCAGGTTACGTTCCTCCATGTCTATCATCACTCTATCATGCCCTTTACCTGGTGGTTTGGGGTCCGGTTCGCTCCAGGTGGCCAGGGGACATTCCATGCCCTGTTGAACTGTGTGGTCCATGTCATCATGTACTCCTACTACGGCCTGTCTGCCCTGGGCCCCGCCTACCAGAAGTACCTCTGGTGGAAGAAGTACCTCACCACCATTCAGCTGatcCAGTTTGTGATCGTTACCACCCACATCTGGCAGTACTTCTTCATGAAGGACTGTCCCTACCAGTTCCCCATCTTCATCTACATCATTGGCCTCTATGGCctggtcttcctcctcctcttcctcaactTCTGGTACCACGCCTACACCAAGGGCAAGAGGCTTCCCAAGGTACTTCAGGCCAAAACCTGGGCCCACCCCTACAACAAAACCAACGGCGAAATAACCAACGGGAATGGTTTCCACTGTGAC

Function

NR:

description
elongation of very long chain fatty acids protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606448.2 False 2770 mRNA 0.45 8 39734703 39750180
XM_036980093.1 False 2977 mRNA 0.45 8 39736927 39750180
TU574282 True 989 TUCP 0.52 8 39734784 39748480

Neighbor

gene id symbol gene type direction distance location
LOC110525927 smim15 coding upstream 56438 39673964 ~ 39680031 (+)
pgm5 LOC106585157 coding upstream 151276 39536644 ~ 39583427 (+)
foxd5 LOC106584956 coding upstream 198914 39533936 ~ 39535789 (+)
cbwd cbwd1 coding upstream 208057 39521723 ~ 39526646 (+)
LOC110525923 NA coding upstream 329442 39402537 ~ 39405261 (+)
LOC110525933 LOC106585165 coding downstream 132597 39882777 ~ 39901525 (+)
LOC110525934 LOC106580580 coding downstream 165958 39916138 ~ 39921723 (+)
LOC110525942 LOC106585173 coding downstream 397156 40147336 ~ 40154986 (+)
LOC118965025 NA coding downstream 409984 40160164 ~ 40165614 (+)
LOC110525943 NA coding downstream 422140 40172320 ~ 40178096 (+)
G505827 NA non-coding upstream 17210 39716391 ~ 39717493 (+)
G505803 NA non-coding upstream 63251 39671153 ~ 39671452 (+)
G505795 NA non-coding upstream 66898 39667254 ~ 39667805 (+)
G505697 NA non-coding upstream 146933 39582011 ~ 39587770 (+)
G505333 NA non-coding upstream 203512 39435988 ~ 39531191 (+)
G505857 NA non-coding downstream 14788 39764968 ~ 39765533 (+)
G505865 LOC106585162 non-coding downstream 22633 39772813 ~ 39776463 (+)
G505882 NA non-coding downstream 39986 39790166 ~ 39864875 (+)
G505955 gk non-coding downstream 158193 39908373 ~ 39911925 (+)
G505962 NA non-coding downstream 174715 39924895 ~ 39925184 (+)
fancc fancc other upstream 422829 39269915 ~ 39312098 (+)
G499111 NA other upstream 5582966 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 6269648 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 6414355 33317578 ~ 33320353 (+)
G505988 NA other downstream 212472 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 446620 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 506887 40256994 ~ 40259050 (+)
G506281 LOC106585187 other downstream 794683 40544863 ~ 40547513 (+)
G506285 NA other downstream 815887 40566067 ~ 40566429 (+)

Expression


Co-expression Network