LOC110525931 (LOC106585163)


Basic Information

Item Value
gene id LOC110525931
gene name LOC106585163
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39790133 ~ 39805341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606453.2
TACCTTCACTTGCACATGAATAATCAGCCGATATCCTGATTTGTTGTGGAAGGAAGTGGCCTTACAGAAATATGTTTTAATATCCGATCGAGAAAAATAAACGTAAATATTAAAGTGAGATAAGTTAGTGTTTGAGGCCAAACTAAATAATTATTTAATAGCACGTTATTGGAATTACCAAACCGCTTCACATTTGTTTGGAGGGAATGCCAGGTGTTCTGTAGTGTTGTGCTTTACCAAACAGGCCGTAGTACAAACAAGCAGCAGAGATGACTGAGAATTTCGACCGAGCCCCAGGCGCAGGTAGAGCCCGTATAAAGCCAACAAGCCCTGGACTCGCAGATGTAGGAGACGGGGACGCAAACTCTGTTTTCAACCAGCGTGAGCCTCTACGACAGCCTCGGACGTCTCCACCTTTGACTGAGAACAACACAAACACTAGTGAGGCTATCGGCGGAGAAAGCAGAAGACCAAGCAAACCCCACCAGGTCATTCACAACAACAGCACTCCTGCCTCCAAAGTGAAAAGGGTGGACTCTCTGGTGAACACCTCCATTCTGTCAGCCAACGCACCCGAGTTCTACCCTTCCAGCTCCCCCCCCTATGAGGAATCTGTTTCGGAGGATGGCAGTGATGGCTATTATACTGAGACAACATTGGCTGAATTGGTTGAGGAGTTTCTCAGCCACCTAAACTCCTCGCCGGGGTCCTTTGAGAACGACATTGAGCACATAGCAAACATGCTGAACAGCTGGGTCACTACAGAGGAGACGCTGCAGGAATTGGTGGAACTCCTCTACACACAATCTACTGTTATCCCCAATTTCTCTTACACGGGGGCAAGGCTCTGTAACTTTCTGTCTCACAACCTTGCACTCAGCCCAGCAAGTGGCAACTTCCGTCAGCTGTTACTAAAACGGTGTCAGACAGAGTATGAACAGAGGGGTGTAGCGGTGCGGGGGGACGCGGACACTCAGAAGAAGTTCCATGCCTATGTGCTCTTCCTGGGGGAGCTTTACCTCAGACTGGAGCTTAAGAGTGCGAAAGGGCCTCCGTCTCGAGCTGAGATCCTGCTTACTGCCCTGAGGGAATTGATGAATGCCCTCTTCTCCCACCCCGTGGATGGAAACCTCATCTGTGCTGTCAAACTGCTCAAGTTGACAGGCTCGGTTTTGGAGGATACGTGGAAAGAGAGCGGGAAGTCTGACATGGACCAAATAGTCCAGAGGATTGAGAACATTGTGCTGGATGCCCAGTGCagcagAGATGtgaagcagatgttattgcgactGGTGGAGCTGAGGTCTAGTAACTGGGGCAGAgtccatgctgctgctgctgccgacGCTACACCTGACAACGACCCCAACTACTTCATGAATGAGCCTACGTTCTACACTGCAGATGGCACTCCCTTTACAGCAGCCGACCCTGAATATTCTGAAAAATACCAGGAGATCCTGGATCGGGAAGATGACTATTTCCCAGAGGCCTATGAAGAGAATGGAAATGAGTCATCATTCAATGACGAGGATGAGATGGACCCTGAGATCGAGGAAGCTTTTGAGAAGTTCTGCTTAGAGTCTGAGAGAAAAAGACGACCATGACACTAGTATGAGAGCATAGCGGGAGACTGAACTTACACATATGTTTCGTGTTCGACTTGCTGGAGTGTTTTCGACTGGGGAAAAATCAAAGATAACCAGCAATTGATAtgtttcaaaaaatatattttttttctcaaaatAAACTGTGCATAGTTTGCACTTCAGTTACAGGTTATTTTCTGGCTGGAATTTGTGTTGGTTGGAAGATTGGGGACAATCAACTGAATCATTTATTTCCTCTGAGTTGTAGTGACTGTTCTGAGTGGGGGGAGTTAGTTTTCTGCTTCTTTTGATTATTTCATAAATGCTACTTTCCCTCAATCTTCCTCATAACGCCGTTGGAAAAAAAGTGTGTGAGGTGGATTTTAGACTACTAAGTAGCTCAACAGCAGAGTAGCATCATCAAATGTGTGCTTAGTTTGATTTCATACTAACTGTATAAGCAACAACAGAATATGGGGTTCAGCTACAGGGAGTAGTGCAGGGGAGGCAACACTCAGAACATTTACAATACAGGGCTTTTtcggaagaagaaaaaaaatatgctTAGACCACcaagtataaaaaataaataacgttTTCAGGAAATTAGCattaaaactgaaaaaaatgtatCTCCGCTCCATGGAGACTGCATTGTTGCAGGAAATTggataaatatgtttttttttacaatctaTACCGCCAAGATGAGCCCGACGGGCCAACCGTGCTCATTGCCATGCTTCCTGCCACACCATCACCTAAGCCCCTTTTTTGATCTAGAAAAAAAACCTTGCAATAGAAATGCGATGTATAGAACGAACACTGGAATGCGTACAATTTTGCTACATGGGGCTTATAAATACAGTATTCAAGAGAATTGTCTGTTCTATATGGTACTTCTCTGTTTTCAGTGTTCTGAATGTTGCACCCTACTGACCTCCAGGGAAATTTTGTTAAATTGCACATTGAGGATTTGGCCAATTAGTTGGTCAACCACCCTTTAACAAGCTATGCATTTAAGGAGGTGGGTTTGTGAAACTAATAAAAGAGCTAGAAATACTGAATACTGTCAAGTGGCAGCAAACTGTCTGCAAAAGAGAGCTCCAGTTGTTTCCACTTTAGGGgtgtttttgttattttactgGTTCAAATGAGCCTTTTTAGAATTGTAATTTATTGGAAAATTGTTGAGTATAGTACGGGGGTTTATTCATTACGGAAACTGTTTTAAGAACCAAACGGAGCAAAACAAGGACAGGTCCCTCCTGGTCCCTCCTGTTCCATTTGCTTcagtttaagaaacgttttgcaacagaattggcggaatgaatacacccctggctcTGGTATCGTTTTTAATCCAATTTGTCTATTGAACAGGGCTTTAAACCTTTTGTAAGTCCTGCAGTTTGGACCTGTCATTGAGAAACACCACTAAAACAGTAATCTCTCAAAGGATGTACCTGCAAGTTCAAATTTTTCTTCATCAGCAATTAATCAATCCCATACAAAGGAATGTTTGTACATATTAACAGTATTGTTTGCCTGCAATAAATTATTTAAAGTATGAGTATTTCA

Function

NR:

description
polyadenylate-binding protein-interacting protein 1-like

GO: NA

KEGG:

id description
K14322 PAIP1; polyadenylate-binding protein-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606453.2 True 3170 mRNA 0.44 11 39790133 39805341

Neighbor

gene id symbol gene type direction distance location
LOC110525929 LOC106585162 coding downstream 11595 39751726 ~ 39778538 (-)
ndufaf2 ndufaf2 coding downstream 75017 39679494 ~ 39715116 (-)
LOC110525926 zswim6 coding downstream 120057 39619282 ~ 39670076 (-)
dock8 LOC106585156 coding downstream 273010 39440552 ~ 39517123 (-)
aopep cssa24h9orf3 coding downstream 355162 39313471 ~ 39434971 (-)
LOC110525027 LOC106584957 coding upstream 2860 39808201 ~ 39819427 (-)
LOC110525932 LOC106585164 coding upstream 20919 39826260 ~ 39877951 (-)
LOC110525935 LOC106580582 coding upstream 96191 39901532 ~ 39905407 (-)
gk gk coding upstream 101229 39906570 ~ 39911822 (-)
npc1l1 npc1l1 coding upstream 129987 39935328 ~ 39946578 (-)
G506639 NA non-coding downstream 172842 39616938 ~ 39617291 (-)
G505752 NA non-coding downstream 182336 39607572 ~ 39607797 (-)
G505748 NA non-coding downstream 185742 39604097 ~ 39604391 (-)
G505743 NA non-coding downstream 189946 39599927 ~ 39600187 (-)
G505739 NA non-coding downstream 194120 39595797 ~ 39596013 (-)
G506795 NA non-coding upstream 100208 39905549 ~ 39905853 (-)
G506802 NA non-coding upstream 127179 39932520 ~ 39932855 (-)
G506805 NA non-coding upstream 142160 39947501 ~ 39947725 (-)
G506806 NA non-coding upstream 146358 39951699 ~ 39951922 (-)
G506865 NA non-coding upstream 243288 40048629 ~ 40048833 (-)
G506641 NA other downstream 165789 39623685 ~ 39624344 (-)
G505493 ptch1 other downstream 556923 39232693 ~ 39233210 (-)
G505472 NA other downstream 583864 39205878 ~ 39206269 (-)
G506785 NA other upstream 81681 39887022 ~ 39889931 (-)
G507063 NA other upstream 735318 40540659 ~ 40542329 (-)
G507906 selenop other upstream 1615683 41421024 ~ 41461922 (-)
znf131 znf131 other upstream 1629634 41431651 ~ 41459095 (-)

Expression


Co-expression Network