LOC110525933 (LOC106585165)


Basic Information

Item Value
gene id LOC110525933
gene name LOC106585165
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39882777 ~ 39901525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606456.2
GTTTATTTTAATTGTTCCAATGGATGGCGCTGTTCTACATGAAGGCGCGCTTTCACTACAGCGGTGGCTTGCCGTCTCACCCTCAGTCACAGTTATTTGTATGAGTTCTACAACAGGGAAGGGCATGGTAGTATGGACTGAAGTTTGAAAGGGTGACAGAGTGAGATCTGTAGCGATGGAGGATTTCTGGGCCATGGTCCTGGCAGGGCTGAAGGTGTGGGTCTGCCTCATTGTGTCTCTTCTCATGGTGCCTGCAATGTTTGGCTTCTCCCTGGGCATCTCCGAGACATACATGAAGATCCTGGTCAAAATCTTGGAGtgGGCCACGTTGAGGATCcaaacagtcaacaaagagcagCGGATAATCCAATCCTCCTCATTCAATAGCCTCGTCCAGAGGGAGGATGGTTCTATGGAGGAGGAGCTGAGGGGGTTAAGGCGCAGTCGCCCCAAACCACCAGTGGGGGGAGACTTCACCCTCAGCGACTGTTTCTACTTCTACAGACGAGGCATTGAGGATATCGTAGAGGATGAGGTGACCCAGCGGTTTTCGTCAGAGGAGCTGGTGTCGTGGAACCTGCTAACTCGGACCAACATCGACTTCCAGTACATCAGCCTCAAACTGACTATGGTCTGGGGCCTGGGCGTGTTCATACGCTACTGCATCCTGACTCCGCTCAGGATCATGCTGGCGTCTATAGGCCTGACCTGGCTGGTGATAGGAACCACTGCTGTAGGATTCCTCCCTAACTGGAGgCTCAAGTCCTGGCTGAGTGAGTGGGTCCATGTGATGTGCTACAGGATCTGTGCTCGAGGCCTCTCCTGCACCATCCACTACCACAACAAAGAAAACAGACCCAGAAAAGGAGGAATCTGTGTGGCCAATCACACCTCCCCGATTGATATTGTCATTCTCTGCAACGATGGGTGTTACGCCATGGTGGGCCAGTCACATGGTGGTCTGATGGGAGTGCTGCAGAGGGCCATGGCGAGGTCCTGTCCTCACATCTGGTTTGAGAGAGCTGATATGAAAGATCGCCACCTAGTGACCAAAAGGTTGAGGGATCACGTGAATGACAAGACTAAGCTTCCTATATTGCTCTTTCCGGAAGGGACCTGTATCAACAACACATCTGTCATGATGTTCAAAAAGGGAAGTTTTGAAATCGGAGGAACGATATACCCGGTAGCCATCAAGtaTGACCCTCAGTTTGGGGATGCGTTCTGGAACAGTGCCAAGTACAACATGGTGAGCTACCTGCTCAGGATGATGACTAGTTGGGCTATAGTCTGTAACGTCTGGTACCTGCCAGCCATGCACCAACAGGAAGGGGAGGATGCTGTCCAGTTTGCCAACAGAGTCAAGTCTGTCATCGCACATCAGGGGGGACTAGTGGACCTGTCCTGGGACGGAGGCCTAAAGAGGGCTAAGGTGAAGGACACGTATAGAGAGGAGCAGCAGAAGAAGTACAGCAGCATGGTGGTGGGTAGCGAGGAGGACCGCAGCGGTAACAGTGACTGACACCCTCCTCTAACCTGTGAAAAGGGCAGCTCGTTCTCGAGCAACCTACATCGCGACCGCTGGAGACGGGAGTTTTACTTTGGCAGTGGTCGCGTCGCATTTCGGTTTCTCCCATGATCACGCAGCGTGAATACATTTAGCTTTCACAGTGTACAGAAGGTGGGCGTAGGCCCATCCAAAAGCTCTTATCTGGGAGTTTGGAAAGGAGCTTGGCCATCACTGCCTGAATACTGCACTGCTGACGACCCCGGACTAGACTGCCATCGAGTGAATGAACCGTTTTAAAGTGCGTTGCGGACTGTAGAATGTTATAACTGATTAGCCAATTGCATTACAATTACTCTCGTCTACTGTGACAACACAGTGAAGCGGAACTGTAAAGGAGATGAGGTGTCAGGTCCAATAGCATCCGTTTGGGATTTTGAATAGCTCTTTCTTGTTCTGCTATAAAACACTGTTCTAATTCTCTGCTGGAAAATTACTATAAAATCCTGTGTTAAGACATGAGAATCAATGGATGACTTTGTGAATAGTGCAATTGTGACTGTAGAGACTTTTTGATCCCAAACTTCTAAATGTCAGTGTTATGCGACGACTATCTGAGGTTATTTTATTTTGTCTTcgtgtttccccccccccccccccccccccccccttttcgtTTATGATTGTATGAGCTGCTGAAACGTTCAGAGCCAGTTGATCAATCCTGTCGATCAATCATTACTGCTAATCGTTTGGAAATAAACATGAGCCCACAGCTGTTCTCTCTTGCTTTAGTGGCGTGTTCATTAGCAAGCTAAGCTACCAGAACAAGGTAGTCAGAATCAGGAAAAACACTTGTCAGTTGACGCTTTGAAATGATTTGCTTACGGTACTGTTGACACGAGTCGTACATAGGTTATGAAAGGGAGCCAAACAGTACAATAATAACAAAAGGCGATTGTTCGGTAGGCAAAGTGACAGGCATGGATTGCAGTTACACAGTCATTCCCCTCAAAACATatattctccctctccctatgtTGTTTCTATGATTCATCACAGTAACAGGCAAGGAAGAGAACTTGGGGTGATCATAACGACTCGATACGATGGGATTATATGGCACTAAGTAGAACGTGGTGTTGGGCATCCCATTCATAGTGCTGTGTCTCTAAAGAAGGGTACATGTTTGGGATTTTTTCGAGCTCTTCTCGTTGGTTTGTTTCCCTGAGGTTTTGCCTTCGTCACTGCCTCCTTTCTTCTGTTGCGTGTTAGGATCTCTGCTCGCACCTGGAAGAGTTGAACCAATTTAAGTCATTCATATTTCGGTAAAAATGTATGTTAACACTAGCATATAAGGTGCAGGAAATTCCCTCTTCCTTACTAACTTACCGGGTGAGAAAGTGTCCATGTTCTCTCCATCTGGACCAGCACGGTGTTGACTGGTATCCTGCTTTTAGATTAAGCAAATGTTATTTAACTACGtgaaaacacacagaacaacatctAACGTGTTGATGTATTGCATCAGTTcatgtaaatgtactgtatatttggcCTGTTATTAACAATGATGACACTTACCCCCAAAATGGTGCTATTGTGCTCTTTCTTCCATGCCTGGCTTTCCAGATGCCTGTTaacatcagatcagatcagatgtAAGTGTACTGTCGCTACCTTGCAGTCCAACCAAGGTGCACAAGTAATTGAAGACAAACTGTGCGAGAGAAATTCTATCATTGTCTGAGGGAAGAGCTTGACCAGTTGAAACATTAAGGAGCCTGTTTAGTGCCTGACGTTCCTACGTCCTGCTGCATAGTTCACATGTAAGAGAGGGTACTATCGGATGGACGGTGAGAGGCAGCACTAAAACAGCTTTTGTTGACCAGCAATAAAATGCCTTCAGATGATAACAGCAAAGTTATTGAAATAGCCTAAAATTATGTGATGCATGAATTCATtgcattttttatatatttttttttactattgttCTTAATGTTAATTGTAGCGGACACATGGACATGAATACAGTATGGTGTGTTTCATGAGGATGCAACATTTGTTTTCAACCAAGATGTCACTTTAATTCAACAGAGTAAAGATCAATCCACCCACCTTCTTAAATAGGAATCAAAGTTCTTGACCGGTTTTGCCTCTTTCTTCACCCCATCTGGTGTCCACGCTATGGATGTATCTATCCCCACATCTACTCTACCCTCAGCTCCAGAAGATATAGGCATCTCTGCTTCTTCTGCAACAACTACATCTCACACGGCAAAAAACGACAAAAATCTTACAAACACCTAACCGTAGGGACTTAGAAGCAGGGACTTAGGTAGCTTGTATCCCCAGCCTGGCTTACAAATTTGGGTGAACCTtgtctctctagctctgtttGACCAATAGATGTGGTGGCTGTTTGGCAGTGGAGTTAACGGGTTTGTTGTTGTATCCACGGCAACCGAGGCCTAAATGACTGGaaccagagccatatatttagaATTGTATTCTAAATGCATAGCTCTGACTGGAACTACACAGGCTCATTGCAGTGTGCCCTTTCTCCTGGATGCACCTTACAGATCACATTTGGggtattaaaggcccagtgcagttaacaatgtgatttttctgtgttttagaTATACTGTAATTCCACCCTGAGGTTGGAATaatctgtgaaattgtgaaaatgatgataattcccttttagtgtaagagcctGACATTTCTGGCTGTTTTGGTGGGATAGAGTTTTTTGatctgcctggtgacatcaaaaGGCAGATCAtcacagctagttttcagttttcccctccccactcagaccactcccagacagtcctagcaaaattcttgcttgagaaattgctcttgcgAAGAAACTATTTTTGTTTCGTTTTGACTATTTTAATTGTTTTCAATCACAGCAAGGTACCTAATTGTgtcccagaaatgatttgacattgatataaaaatggctgcattaaACCTTTAATCTAAATCGTGCTGTGTTTGAGGGGGAGATGgatgatgtggggggggggggggggggggggtaattagGTTTACTTGAACATGTTTTGTAGTGGTTAAGTGTAGTTTGTGAGTGTTCTGGTCCCAGTATCGGCAACAGCTGTCAGAAACAAGAGTTTGTACGACTGTAAAGAGGACAACACTTTCATTCAACTGTGCGATAGTACAAATACTAACTGTACTGTATCTAAATGTAACCACaaataaacataaacattttacaGA
>XM_021606457.2
ATTGTTCCAATGGATGGCGCTGTTCTACATGAAGGCGCGCTTTCACTACAGCGGTGGCTTGCCGTCTCACCCTCAGTCACAGTTATTTGTATGAGTTCTACAACAGGGAAGGGCATGGTAGTATGGACTGAAGTTTGAAAGAGTGAGATCTGTAGCGATGGAGGATTTCTGGGCCATGGTCCTGGCAGGGCTGAAGGTGTGGGTCTGCCTCATTGTGTCTCTTCTCATGGTGCCTGCAATGTTTGGCTTCTCCCTGGGCATCTCCGAGACATACATGAAGATCCTGGTCAAAATCTTGGAGtgGGCCACGTTGAGGATCcaaacagtcaacaaagagcagCGGATAATCCAATCCTCCTCATTCAATAGCCTCGTCCAGAGGGAGGATGGTTCTATGGAGGAGGAGCTGAGGGGGTTAAGGCGCAGTCGCCCCAAACCACCAGTGGGGGGAGACTTCACCCTCAGCGACTGTTTCTACTTCTACAGACGAGGCATTGAGGATATCGTAGAGGATGAGGTGACCCAGCGGTTTTCGTCAGAGGAGCTGGTGTCGTGGAACCTGCTAACTCGGACCAACATCGACTTCCAGTACATCAGCCTCAAACTGACTATGGTCTGGGGCCTGGGCGTGTTCATACGCTACTGCATCCTGACTCCGCTCAGGATCATGCTGGCGTCTATAGGCCTGACCTGGCTGGTGATAGGAACCACTGCTGTAGGATTCCTCCCTAACTGGAGgCTCAAGTCCTGGCTGAGTGAGTGGGTCCATGTGATGTGCTACAGGATCTGTGCTCGAGGCCTCTCCTGCACCATCCACTACCACAACAAAGAAAACAGACCCAGAAAAGGAGGAATCTGTGTGGCCAATCACACCTCCCCGATTGATATTGTCATTCTCTGCAACGATGGGTGTTACGCCATGGTGGGCCAGTCACATGGTGGTCTGATGGGAGTGCTGCAGAGGGCCATGGCGAGGTCCTGTCCTCACATCTGGTTTGAGAGAGCTGATATGAAAGATCGCCACCTAGTGACCAAAAGGTTGAGGGATCACGTGAATGACAAGACTAAGCTTCCTATATTGCTCTTTCCGGAAGGGACCTGTATCAACAACACATCTGTCATGATGTTCAAAAAGGGAAGTTTTGAAATCGGAGGAACGATATACCCGGTAGCCATCAAGtaTGACCCTCAGTTTGGGGATGCGTTCTGGAACAGTGCCAAGTACAACATGGTGAGCTACCTGCTCAGGATGATGACTAGTTGGGCTATAGTCTGTAACGTCTGGTACCTGCCAGCCATGCACCAACAGGAAGGGGAGGATGCTGTCCAGTTTGCCAACAGAGTCAAGTCTGTCATCGCACATCAGGGGGGACTAGTGGACCTGTCCTGGGACGGAGGCCTAAAGAGGGCTAAGGTGAAGGACACGTATAGAGAGGAGCAGCAGAAGAAGTACAGCAGCATGGTGGTGGGTAGCGAGGAGGACCGCAGCGGTAACAGTGACTGACACCCTCCTCTAACCTGTGAAAAGGGCAGCTCGTTCTCGAGCAACCTACATCGCGACCGCTGGAGACGGGAGTTTTACTTTGGCAGTGGTCGCGTCGCATTTCGGTTTCTCCCATGATCACGCAGCGTGAATACATTTAGCTTTCACAGTGTACAGAAGGTGGGCGTAGGCCCATCCAAAAGCTCTTATCTGGGAGTTTGGAAAGGAGCTTGGCCATCACTGCCTGAATACTGCACTGCTGACGACCCCGGACTAGACTGCCATCGAGTGAATGAACCGTTTTAAAGTGCGTTGCGGACTGTAGAATGTTATAACTGATTAGCCAATTGCATTACAATTACTCTCGTCTACTGTGACAACACAGTGAAGCGGAACTGTAAAGGAGATGAGGTGTCAGGTCCAATAGCATCCGTTTGGGATTTTGAATAGCTCTTTCTTGTTCTGCTATAAAACACTGTTCTAATTCTCTGCTGGAAAATTACTATAAAATCCTGTGTTAAGACATGAGAATCAATGGATGACTTTGTGAATAGTGCAATTGTGACTGTAGAGACTTTTTGATCCCAAACTTCTAAATGTCAGTGTTATGCGACGACTATCTGAGGTTATTTTATTTTGTCTTcgtgtttccccccccccccccccccccccccccttttcgtTTATGATTGTATGAGCTGCTGAAACGTTCAGAGCCAGTTGATCAATCCTGTCGATCAATCATTACTGCTAATCGTTTGGAAATAAACATGAGCCCACAGCTGTTCTCTCTTGCTTTAGTGGCGTGTTCATTAGCAAGCTAAGCTACCAGAACAAGGTAGTCAGAATCAGGAAAAACACTTGTCAGTTGACGCTTTGAAATGATTTGCTTACGGTACTGTTGACACGAGTCGTACATAGGTTATGAAAGGGAGCCAAACAGTACAATAATAACAAAAGGCGATTGTTCGGTAGGCAAAGTGACAGGCATGGATTGCAGTTACACAGTCATTCCCCTCAAAACATatattctccctctccctatgtTGTTTCTATGATTCATCACAGTAACAGGCAAGGAAGAGAACTTGGGGTGATCATAACGACTCGATACGATGGGATTATATGGCACTAAGTAGAACGTGGTGTTGGGCATCCCATTCATAGTGCTGTGTCTCTAAAGAAGGGTACATGTTTGGGATTTTTTCGAGCTCTTCTCGTTGGTTTGTTTCCCTGAGGTTTTGCCTTCGTCACTGCCTCCTTTCTTCTGTTGCGTGTTAGGATCTCTGCTCGCACCTGGAAGAGTTGAACCAATTTAAGTCATTCATATTTCGGTAAAAATGTATGTTAACACTAGCATATAAGGTGCAGGAAATTCCCTCTTCCTTACTAACTTACCGGGTGAGAAAGTGTCCATGTTCTCTCCATCTGGACCAGCACGGTGTTGACTGGTATCCTGCTTTTAGATTAAGCAAATGTTATTTAACTACGtgaaaacacacagaacaacatctAACGTGTTGATGTATTGCATCAGTTcatgtaaatgtactgtatatttggcCTGTTATTAACAATGATGACACTTACCCCCAAAATGGTGCTATTGTGCTCTTTCTTCCATGCCTGGCTTTCCAGATGCCTGTTaacatcagatcagatcagatgtAAGTGTACTGTCGCTACCTTGCAGTCCAACCAAGGTGCACAAGTAATTGAAGACAAACTGTGCGAGAGAAATTCTATCATTGTCTGAGGGAAGAGCTTGACCAGTTGAAACATTAAGGAGCCTGTTTAGTGCCTGACGTTCCTACGTCCTGCTGCATAGTTCACATGTAAGAGAGGGTACTATCGGATGGACGGTGAGAGGCAGCACTAAAACAGCTTTTGTTGACCAGCAATAAAATGCCTTCAGATGATAACAGCAAAGTTATTGAAATAGCCTAAAATTATGTGATGCATGAATTCATtgcattttttatatatttttttttactattgttCTTAATGTTAATTGTAGCGGACACATGGACATGAATACAGTATGGTGTGTTTCATGAGGATGCAACATTTGTTTTCAACCAAGATGTCACTTTAATTCAACAGAGTAAAGATCAATCCACCCACCTTCTTAAATAGGAATCAAAGTTCTTGACCGGTTTTGCCTCTTTCTTCACCCCATCTGGTGTCCACGCTATGGATGTATCTATCCCCACATCTACTCTACCCTCAGCTCCAGAAGATATAGGCATCTCTGCTTCTTCTGCAACAACTACATCTCACACGGCAAAAAACGACAAAAATCTTACAAACACCTAACCGTAGGGACTTAGAAGCAGGGACTTAGGTAGCTTGTATCCCCAGCCTGGCTTACAAATTTGGGTGAACCTtgtctctctagctctgtttGACCAATAGATGTGGTGGCTGTTTGGCAGTGGAGTTAACGGGTTTGTTGTTGTATCCACGGCAACCGAGGCCTAAATGACTGGaaccagagccatatatttagaATTGTATTCTAAATGCATAGCTCTGACTGGAACTACACAGGCTCATTGCAGTGTGCCCTTTCTCCTGGATGCACCTTACAGATCACATTTGGggtattaaaggcccagtgcagttaacaatgtgatttttctgtgttttagaTATACTGTAATTCCACCCTGAGGTTGGAATaatctgtgaaattgtgaaaatgatgataattcccttttagtgtaagagcctGACATTTCTGGCTGTTTTGGTGGGATAGAGTTTTTTGatctgcctggtgacatcaaaaGGCAGATCAtcacagctagttttcagttttcccctccccactcagaccactcccagacagtcctagcaaaattcttgcttgagaaattgctcttgcgAAGAAACTATTTTTGTTTCGTTTTGACTATTTTAATTGTTTTCAATCACAGCAAGGTACCTAATTGTgtcccagaaatgatttgacattgatataaaaatggctgcattaaACCTTTAATCTAAATCGTGCTGTGTTTGAGGGGGAGATGgatgatgtggggggggggggggggggggggtaattagGTTTACTTGAACATGTTTTGTAGTGGTTAAGTGTAGTTTGTGAGTGTTCTGGTCCCAGTATCGGCAACAGCTGTCAGAAACAAGAGTTTGTACGACTGTAAAGAGGACAACACTTTCATTCAACTGTGCGATAGTACAAATACTAACTGTACTGTATCTAAATGTAACCACaaataaacataaacattttacaGA

Function

NR:

description
PREDICTED: glycerol-3-phosphate acyltransferase 3-like isoform X1

GO: NA

KEGG:

id description
K13506 GPAT3_4, AGPAT9, AGPAT6; glycerol-3-phosphate O-acyltransferase 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606456.2 False 4774 mRNA 0.45 14 39882777 39901525
XM_021606457.2 True 4756 mRNA 0.45 14 39882787 39901525

Neighbor

gene id symbol gene type direction distance location
LOC110525928 LOC106585161 coding upstream 132597 39734703 ~ 39750180 (+)
LOC110525927 smim15 coding upstream 204512 39673964 ~ 39680031 (+)
pgm5 LOC106585157 coding upstream 299350 39536644 ~ 39583427 (+)
foxd5 LOC106584956 coding upstream 346988 39533936 ~ 39535789 (+)
cbwd cbwd1 coding upstream 356131 39521723 ~ 39526646 (+)
LOC110525934 LOC106580580 coding downstream 14613 39916138 ~ 39921723 (+)
LOC110525942 LOC106585173 coding downstream 245811 40147336 ~ 40154986 (+)
LOC118965025 NA coding downstream 258639 40160164 ~ 40165614 (+)
LOC110525943 NA coding downstream 270795 40172320 ~ 40178096 (+)
LOC110525945 LOC106585174 coding downstream 283646 40185171 ~ 40191808 (+)
G505882 NA non-coding upstream 17902 39790166 ~ 39864875 (+)
G505865 LOC106585162 non-coding upstream 106314 39772813 ~ 39776463 (+)
G505857 NA non-coding upstream 117244 39764968 ~ 39765533 (+)
G505827 NA non-coding upstream 165284 39716391 ~ 39717493 (+)
G505803 NA non-coding upstream 211325 39671153 ~ 39671452 (+)
G505955 gk non-coding downstream 6848 39908373 ~ 39911925 (+)
G505962 NA non-coding downstream 23370 39924895 ~ 39925184 (+)
G505972 npc1l1 non-coding downstream 39638 39941163 ~ 39941755 (+)
G505984 NA non-coding downstream 57343 39958868 ~ 40010338 (+)
G505997 LOC106584939 non-coding downstream 74941 39976466 ~ 39982658 (+)
fancc fancc other upstream 570903 39269915 ~ 39312098 (+)
G499111 NA other upstream 5731040 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 6417722 33447246 ~ 33465055 (+)
G505988 NA other downstream 61127 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 295275 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 355542 40256994 ~ 40259050 (+)
G506281 LOC106585187 other downstream 643338 40544863 ~ 40547513 (+)
G506285 NA other downstream 664542 40566067 ~ 40566429 (+)

Expression


Co-expression Network