npc1l1 (npc1l1)


Basic Information

Item Value
gene id npc1l1
gene name npc1l1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39935328 ~ 39946578 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606462.2
ACTAGTCATGGGGTGGGGTGGCTGATGTCTTTGCCTTTTCCTGCCCCTGGCTCTCACCCCTGggacttacagacagacaggcaggcagacagacagagaacgagagagaggactAACACACAGAGGCCTCTCTCACTATATCATCCCTTCACtggaaaaaaaaacatctaacTTTTGTTATTTATTCAAGTGATCGTATTGAGATTAGAACTCTCTTTTGAAAGGGGAGACCTGCCATAGTACGACGGCAACTAAACCCGACACTCCATCCTAATCTACCTGGAGTTCCAGGCTCTTTCTAAGCTGTGAGGTGCTGTGGAATAGCAGCATGGGTAGACCCACTATGAGCCGTGCCACTGCCCTGCTCACACTCCTGGCCTGTCTGGTTGTCTTAGAGGCCCGTCATGAGCCAGGATACTGTGCCTTCTACGAGGAGTGTGGTAGAAACCCAACGGTGGCGGGATCCCTCCTCCCCCCCATAATCCCCTGCCTCAACTACAGCCGTGCTCGAGCCCTCGAGGGGGAGCACTACCAGCAACTCAAAAAGGTGTGCCCCATGCTGGACCGTGGAGAGGGCAGCACCACCGCCTGCTGCTCTATAAAGCAGCTCAAGTCCCTGGAAATGAGCCTGATGCTGTCCAAGGCAGTGCTCATGCGCTGCCCCTCCTGTGCTGACAACTTTGCCCACCTCCACTGCATCAACACCTGCAGCCCTGACCAGACCACAACCATTAACGTGACACGCACCATGAACATCACCACCTTGGGGATTGTCAAAGAGGCTGTGGTGGGTTACCAGGCCTACTTGTCCACCTCGTTTGCCGACAAATCCTTTGAGTCCTGCAAGAACGTGAGGATTCCCGCCACGGGGGGGTATGCCATCGCTACCATGTGTGGACGCTATGGCTCAGCACTCTGTACGGCTCAGCGCTGGTATGACTTCCAGGGAGACTCCAGTAATGGACTGGCCCCACTGGACATCGACTTCAGGCTGATCCCAGAAGGGGTCACCGAGGGGATACCCGATGGGGTAGTACCTTACGCTGGGAGGGCGCTGGGGTGTAACGAGATGACCCCAACAGGGGCAGAGGTTTGCTCCTGCCAGGACTGCCAGGCCTCGTGCCCGGTCGtaccctctcccccaccccccgcAGAACCCTTCACCATCGGGGGGGTGGACGGCTACCTGGTGCTATGTGTGATCTTCCTCTGCGTTCTCATTCTAGCCTTCCTGCTCTTTGTGCTCTCCACCTACCTCCTGAGGAAGGAAGAGGGCAAGGACTCtgagaaagggaaaggaaaggggaaaGGGATGGATAAGAATGGGAACAACGTGAGTGAGAGGCTGATTGAACCGTGGGAGGTGACGTGTACAGACAAGAACAGCCTGGCTACTCAGGAGTTCCTGGGTTCTGGGTTCCGGGCATGGGGCACCCTCGTCGCCTCACACCCCCTCAAGGTGTTGCTAGCGTCGGCTGTGGTCACAGCTGCCTTCGCCACAGGACTCATGCACATTGAACTGACCACTGACCCGGTCCAGTTGTGGTCAGCCCCAAACAGCCGTGCCCGTATGGAGAAGGACTTCCATGACAAGCACTTTGACCCATTCTTTAGAACCAACCAGATGATCCTAACAGCGCCGGGCCGACCTGGTCACTTCTACGACTCGTTGCTGTTCGGGAAGCAGAACTTCAGTGGAATCATTGCCAAAGACCTGATCCTGGAACTTCTAAAGCTGCAGAAAAAGATTCAGAACATTGAGTTCTGGTCGAATGATCTGAACCGTATGGCAAGTCTGAAGGATGTGTGCTTCGCGCCCCTCaacccctccaacccctccctgACTGACTGTGCTGTCAACAGCCTGCCCCAGTACTTCCAGAACAGTGTGGACAACCTCAACGCTAAAGTCAACATGACGGAGCTGGGAGTGACCAAGGAGGTGGACTGGAGAGACCACTTCATCTACTGCGTCAACTCTCCCCTGTCGTTCaaagacatcactgacctgcagTTGAGCTGCATGGCTGATTATGGAGCACCAGTCTTCCCCTTCCTCGCAGTGGGAGGATACGAGAATGAAGGCTACACTACAGCAGAAGCTCTCATCCTGACATTCTCCCTCAATAACTACCCTCGAGACAACGTTAAGTTCAAGGTGGCCCTGGAGTGGGAGCAAAGGTTCCTGGACATAGTCCAAGAGTACCAGAAGAGTCCAGGCAACCCGTTCACCTTTGCGTACATGGCTGAGAGGTCACTGGAGGATGAGATTAACAGGACGACAGCGGAGGACATCCCCATCTTCATGATCAGCTATGCTGTTATCTTTGTGTACATCGCTGTGGCTCTGGGGGAGTACACCTCCTTCAGTCGAATACTGGTGGACTCGAAGTTCCTGGTTGGTCTGGGTGGTATCCTGGTGGTGGGCTGCTCTGTCCTGGCCTCCATGGGTTTCTACGCCTGGATCGGTATCCCCTCCTCTCTGATCATCCTCCAGGTTGTCCCCTTCCTGGTGCTGGCCGTAGGAGCTGACAACATCTTTATCTTCGTCCTGGagtaccagAGGGACGCACGGAGGCCAGGCGAAAAGAGGGAGGAGCGGATCGGACGTGTCCTTGGAAATGTAGCTCCCAGCATGCTCCTGTGCTCTCTCTCCGAGTCTGTCTGCTTCTTCCTGGGCGCTCTGAGCACCATGCCTGCTGTCAAGTCCTTTGCTCTGTACGCTGCCCTGGCTGTGCTCATGGACTTCGTGCTGCAGATGACGGCCTTCGTGGCGTTGCTGTCCCTGGACGCCAGACGGCAGGACGGGAACCGCTGCGAGCTGGCCTGCTGCGTCTCCGTCAAGACCACGGCCCCCTCCAAACCCAACGAGGGTTTCCTTCTGCCCGCCATGAGGAAATACTATGCCCCCGTCCTCCTCCACCCCGTCACCAGGGTCATAGTGaTTGTTGTGTTCATCTTTATGTTCATCTCCTCCATCTACCTGATGTTCTATGTGACAGTGGGTCTGGATCAGGAGCTGGCTATGCCCCAGGGTTCCTACATGTTGGAGTATTTCAAGTACCTGTATGCGTACTTTGAGGTGGGCGTCCCAACCTATTTTGTCACGACAAAGGGCTTTAACTTCACCAGCATAGCGGGTATGAATGCAACCTGCTCCAGTGTGGGCTGtgaccccttctctctcactcagaAGATCCAGTACGCCACTGAATACCCTGACCTATCTTACATGGCCATCCCAGCAAATTCGTGGGTGGACGACTTCATTGACTGGCTAAACCCTGGATCCAAATGCTGTCGGCTCTATTCCATCGGTCCTAACAAAGGGAAATTCTGTCCCGCGAGCGAATCGGCCTTCCTGTGTGGGCAGAAGTGTATGAAGACTCCCCTTAACGGGGTACTGAGGCCCGACAAGGAGCAATTCAACCGCTTCCTACCAGACTTCCTAGGCAACAGGCCCGACCTGCAGTGCCCTAAGGGAGGTCTTGGAGCCTATGATAAGGCTGTGATCACAGATGAGAGTGGAGAAATTATAGCCACCAGGTTCATGGCGTACCACACGGCCCTGACCACCTCCAAGGAGTTCACTGCAGCTCTAAAAATAGCCAGAGAGCTGGCCCACAACATCACCCTCAGCATGAGATCCATACCTGGCACATCCCAGGACTTTGAGGTCTTCCCCTACACggTGACCTATGTGTTCTATGAACAGTACCTGACCATTGTGTCTGAGGGACTGTTTAACATCTCCCTGTGCCTACTGCCAACCTTTGTGGTGTGCTGTCTGCTGCTGGGCATGGACCTGCGCTCCGGCGCTCTCAACCTCCTCACCATCATCATGATCACCGTGGATACCGTGGGCGTCATGACACTGTGGGGCATCGACTACAACGCTGTGGCTCTTATCAACCTGGTCACGGCGGTGGGTATCTCTGTGGAGTTTGTATCTCACATGACACGATCCTTTGCCATGAGCATCCAGCCTACACATGTAGAGAGAGCCAAGGAGGCTACTGCTACTATGGGCAGTGCGGTGTTTGCTGGCGTCGCCATGACGAACCTGCCTGGCATAGTTGTGTTGGCATTTGCCAAAGCCCAGCTCATCCAGATATTCTTCTTCCGTTTAAACCTGGTTATCACTCTGCTGGGCATGGCCCATGGCCTCATATTCCTGCCCGTGCTGCTCAGCTACTTTGGTCCTGGAGTGAATAAAGCAGTGTTGCTACGGCTACAACAGGCCAAGGCCCAGGAGCTGGAGCTGAGTAGCAACGCCAAGAACATCTACGACAACATCGGCTACGAAAACCAGGAGAACAGCCCCAACCCCCATCACCCCGTACGAACCCCGCACCACTGAGAACCTCAAAAAGGTTGCGATAGAAGAGACAATaccccaccccctccccacacaGAGACAATCTCTGAGGAACAGCTGGATAAAGTGGTGAGAGTGGGCCATTTCTGAACACCACCACCTAACCAACTGTTTCCAGGTTATCTACATATACCTCCATAACCATAGGAACCGCAAGAGCCCGAAGCAAGGACAATGTATGTGGCAAAGCAGGGTCTAATAGAGATTCTATATATTGAGCCATATGTGCAGATCTTCATCTATGGCACTAGCGGCAATGTCCCATTATTCAGGAAAGGCAGGACTGAAGGCCGCAATAGACACGACCGTGCAATATCTACTACCAGATGAACTGTGTGGAGTGGAGATACATAACCACGCACTGAGCTGAGGGACCTATTGGTCGTTCAACAGAGACATCACTTATAATAAATAGTATACTGTGTAATGTAGACATGTAGTCTCTCATCTCCATATTCTGCATGTGACAGTTTCTGCCTGGGCAGGAGGAACTGGCAGGATGATTTCTGCATTGCAAATTAGGCAGGCACAAAGTGGTTCCTAGTGAGAAATTACATACAAATATGCTaacaaaattatttttttatactATTAGAATTGTTTTATGTGTCAGTTAAATGTAAATGTATGAACAAAATCTGTTCATCAAGTATTCCCACGAATAAAAAAGAGATGTGATCATGTCTGAATGTAATCAAGGTAAGAAAGTAtagttattttcaaatacaatctctttttgattgtggtcaatttgcagtgtacaaattattataattatgtttCGGTTCCCCTTCCATCCACTCCGACAAAATTCGGcctgcagctgaatctagttgcttTCCCCTAAATTACAGTAAGAGAAAACACTCCAGTAAATCATTATTTTCTGTAttgtttgtaaaaaaatattgtGAAATGACTATTAAACTTGTCTGTAAAGTA

Function

symbol description
npc1l1 Is expressed in liver. Orthologous to human NPC1L1 (NPC1 like intracellular cholesterol transporter 1).

NR:

description
Niemann-Pick C1-like protein 1

GO: NA

KEGG:

id description
K14461 NPC1L1; Niemann-Pick C1-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606462.2 True 5320 mRNA 0.52 20 39935328 39946578

Neighbor

gene id symbol gene type direction distance location
gk gk coding downstream 23506 39906570 ~ 39911822 (-)
LOC110525935 LOC106580582 coding downstream 29921 39901532 ~ 39905407 (-)
LOC110525932 LOC106585164 coding downstream 57377 39826260 ~ 39877951 (-)
LOC110525027 LOC106584957 coding downstream 115901 39808201 ~ 39819427 (-)
LOC110525931 LOC106585163 coding downstream 129987 39790133 ~ 39805341 (-)
LOC110525938 aebp1 coding upstream 12283 39958861 ~ 39983075 (-)
LOC110525939 LOC106585169 coding upstream 75141 40021719 ~ 40033727 (-)
star star coding upstream 89628 40036206 ~ 40040599 (-)
LOC110525940 LOC106585171 coding upstream 109433 40056011 ~ 40132392 (-)
LOC110525941 LOC106585172 coding upstream 189619 40136197 ~ 40139203 (-)
G506802 NA non-coding downstream 2473 39932520 ~ 39932855 (-)
G506795 NA non-coding downstream 29475 39905549 ~ 39905853 (-)
G506639 NA non-coding downstream 318037 39616938 ~ 39617291 (-)
G505752 NA non-coding downstream 327531 39607572 ~ 39607797 (-)
G505748 NA non-coding downstream 330937 39604097 ~ 39604391 (-)
G506805 NA non-coding upstream 923 39947501 ~ 39947725 (-)
G506806 NA non-coding upstream 5121 39951699 ~ 39951922 (-)
G506865 NA non-coding upstream 102051 40048629 ~ 40048833 (-)
G506866 LOC106563826 non-coding upstream 102725 40049303 ~ 40049566 (-)
G506785 NA other downstream 45397 39887022 ~ 39889931 (-)
LOC110525929 LOC106585162 other downstream 170552 39751726 ~ 39778538 (-)
G506641 NA other downstream 310984 39623685 ~ 39624344 (-)
aopep cssa24h9orf3 other downstream 511838 39313471 ~ 39434971 (-)
G507063 NA other upstream 594081 40540659 ~ 40542329 (-)
G507906 selenop other upstream 1474446 41421024 ~ 41461922 (-)
znf131 znf131 other upstream 1488397 41431651 ~ 41459095 (-)
G508303 NA other upstream 1874277 41820855 ~ 41821210 (-)
G508891 NA other upstream 2197519 42144097 ~ 42144885 (-)

Expression


Co-expression Network