LOC110525938 (aebp1)


Basic Information

Item Value
gene id LOC110525938
gene name aebp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39958861 ~ 39983075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980095.1
CCTGCCTGTTTGTGGCAGTCTGCAGAGGGGAAAGCAGGCGGAAGAAGTGGAAGAAGTGCTCTGCTGCTGAACTAAACTCTCTTCACCTCTTCAACCAGGAGTTACAGCCTCTATAGAGCCAACCTGGATTCTTCATTCCCTCTCCTGGCTTCtccagtgagctgctctgctcaATCTATGCTGAGATCTCCTTttgatcactgcacctgttgaAACTCGTCAGCCAGGTGAAGGGATTATATCTCTCTCAGCCATAACTTTTTCAGCTGTCGATCCAGGAGAGCTGTGGATCTCGTTTAGTTAAATTGCAGGACAATTGGActgctctccctcgctcttcctccctccctcactattTTCTTCTCTCTGTGTCCAGCCCTGCCTCATGCTCTGAGTGAGTCTGTGTCTGGCTGTGGCTTGGAGCTCCAGAATCTTCCTGACCGTAGAGAAGACATGGAACACTAGAGTAGAAAACTGAGAGGTAGAATTCTGGGGTAGAATTCAGATATAGAACACTTCGGTAGAATTTCTGAGTAGCGTTCTGAGCTGGAACTTTTGGCAAGATTTTGGGAAATCAGAGCTGGAATACTTAATCGGAACACTGAGCTGAAACTTTTCAGTGGAACATTGAGGTAGAATCCTGAGGCAGGTAGAATAAGGAGGATGGGAGGTCATACTGCAGTGGTGTGTTTGGTTCTGCTGGCCATATGCTGTGTGCTACTGCCCAAAGCAGGGGAGAGTGCAGGAGGCATTGTCTCTTTAGGCCAGgctgtagaggagagagggatggaggcccTATATGGAGAGGAGTCCCAGAATGAACCAGCTAAAGAAGAGGAACTCACAGAGACACAAAGCCAAACTAGCAAGGAAAAGAGAGCCACAGAGGAGGATGCCCTACCAGCCAGGGTCAGAAGAGCCGAAGAGGAGGGCAAAGGGAATAAAAAGAAGGCCAAGAAAGACAAGAAAGACAAGAAGAACAAGGAGCCCAAAGTGCCCAAGGCCACCAAGAAGCCTAAAGCAGACAAAAAGCCAAAGAAGGGCAAAGGAAAGGAGCCACGGACAGAAGCACCTACAACAACTCCACCACCTAcaactaccacactaccacccaCAACTACCACACCACCACCTACAACTACCACAGAGGTCTACACAGAAGCAGCTCCCACAGAACCTGACCCATACCCAGACTACCCCTACACAGACAACGAGGATGACTACTGGAAGCCAGATGAGGAGGAGCCCGGAGGCCCAGTGGTCGACCCAGAAGATGACTATTGGAAGGGAGAGAACCCAACGGCCACGCCCCCCACTCTTGTGGTGGATGGAAAGGTGGACAAGGGAGACGAGGACTACTGGGACGCCAGATACGAGGTGCCCGAGAATCTTCCTTTCCCTGATGGTACAGAGGTCGTCCCCAAAGAGAAAGATGACTGGAGCTATGCTGTTACAGAGGAGCTTGTTACACCACCACCCACCTATGAAAGCCCATGGTACGAGGAGTATGACTACGGGCACAGTGGTGGACAGACGAAaaaacaggaggagagagagatccaaaggagagaaaaggagcgAGAGGATAGAGAGAGAGCTcagcagaggagggaggaggaagagagggccaAAGCCAAGAAGAGACCACACGTATTCAAGGAGCCCAAAAAGTGTCCTCCCCTGGGTATGGAGTCTCATAGGATAGAATCAGACCAGCTGCTGGCCTCCTCTATGTCTCACTACCGCTACAGCCAAACCAGGGCACGACTCAACATacaggctTCGGATGATGAGGAGGACATGCATGGTGGGGCGTGGTGTCCTAACCCAGAGGAcaatattcactggtttgagatGGACGCTCGCAGAGCAACAGAGTTTACTGGGATCATAACACAGGGACGAGACTCACGCAACGAGAGTGACTTTGTGACATCGTACTACGTGCAATTCAGTAATGACAGCAGAGAATGGAAAACCATCCATGACGGTTACTCTGACTGGttgTTTTTTGGTAACTCCGATAAGGATACCCCTGTGCTGAATCAGTTAGCTGAGCCCATACTAGCACGCTACATCAGAGTTATCCCTCAGAGCTGGAATGGTAGTTGCTGTATGAGGCTGGAGGTACTAGGATGCCCACTGCCTGACCCCACCAGTGCCTACCAGAGGCTGCAGAACGAGGTGACTCCAGTCCAGTACCTGGACTTCAGACATCACAACTACTCAGACATGGTCACGATGATGAAGTCCGTGTCTGAGGAGTGTCCCAACATCACCAGTATGTACAGCCTGGGTCGCAGCTCCAACGGACTGGACATCCTGGCCATGGTGATATCAGGCAACCCCACAGAACACGAGATAGGTGAGCCGGAGTTCCGCTACACGGCCGGTCTCCATGGAAACGAGGCGACGGGGCGGGAGATGGTTCTTCTTCTGTTGCAGTACCTGTGTAAGGAGTACAATGATGGCAACCCCAGAGTGCGCCGCCTGGTGGAGGAAATACGTATCCACCTGGTGCCCTCACTCAACCCTGATGGGCAGGAGAAGGCCCTGACAGTGGGTTCCGAGCTGAGTGGTTGGACAACAGGCCACTGGACGGAGGACGGCCACGACATCTTCCAGAACTTCCCAGACCTGAACAGTGTTTTGTGGGAGGCTGAGGACAAGGGCATGGTGCCCAAACTGATCCCCAATCACCATGTCAAGATCCCTGCAGATCAAGAGGGGGATGACAGGATTGCTGTGGAGACTCGAGCCATCATCTTGTGGATGGAGAGCCACCCATTCGTACTGGGGGCCAACTTCCAGGGGGGAGAGAGGTTTGTGGCGTACCCATACGACAATCACCACCTAACCAAGACCGCCGGCACCAGCAccagagagggcaagagagagagggcacagAGTCGCAAGAAGAGACAGTACGAGGAGTTTGACGTGACGGCGTGGGGGAGGGACTACGACCGCGAGGAGCCGGAGGAAGACGATAGAAACAGGGGATACCAGCAGCCAGAAGAAGACCAGTGGAACAGGGGATACCAGGAGCCAGAAGAGGACCAGTGGAACAGGGGATACCAGCAGCCAGAAGAAGACCAGTGGAACAGGGGATACCAGCAGCCAGAAGACCAGTGGAACAGGGGATACCAGCAGCCAGAAGAAGACCAGTGGAACAGGGGATACCAGCAGCGAGAAGAAGATCAGTATAACAGAGGATACCAGCAGccggaggaggagtggaggggacaTGGCTATGGCCacagggaagaggaggatgacagagggagaggggaggatgacagagggagaggggggtacgCAGAGCCTGAGGATGAACCCAGGGCCACAGCAGACGCCTCCTTTTTCAGGTGGTTGGCCATCTCTTATGCCTCTACTCACCTGTCGATGACATATACTTCCCACGGCTCCTGTCACGGCAATGACATCACTGGAGGCGTTGGAATCGTCAATCGCGCCAAGTGGCAGCCCGTCACAGGAAgTATGAATGACTTCAGCTACCTGCACACTAACTGTCTGGAGCTGTCAGTGTTCCTTGGCTGTGATAAGTTCCCCCATCAGAGTGAGCTGGTCATTGAGtgggagaagaacagagaggccATGCTCACCTTCATGGAGCagGTGCAGCGTGGGATCAGGGGCGTGGTAAAAGACAATGAGGGGAACCCCATCGCTAATGCTACAGTTTCTGTAGAGGGGGTCAACCATGATGTCTCTACAGCTGTAACAGGGGACTACTGGCGCTTGTTGAACCCAGGTGAGTACCGTGTGACGGTGCGGGCAGAAGGCTTCGCCCCCCTGACCAAGCTGTGTGTGGTGGGCTACGAGGCAGGGGCAACTACCTGCAGCTTTAACCTGGCCAAGTCCAACTGGGACCGCATCAAACAAATCATGGCCCTGCACGGCAACAAGCCCATACGCCTGCTCAGCCACGGCAACGGCGGAACAAGACAGAACACGGTCTCCAATGGCAACAGGGATGTGGGGCATCCCGACGGGGTCTCCGCCATAGATCCTAATGTGCGTCGCAAGCAAAAGCAAAAGCTAGAGTTCGACCGCCGTCGTCGTCTACGGCAACAGAGACTGATGAGATCGACAACAACGTTGCCCCCGACGACCACGCCGGTTCCCATGACAATAGAGGCGGAGCCCACCACTGCTTGGTACGACACGTGGTTCATAGGAGAGGGGCAAACGTCGGCACCGGAAAGTTTCACGGACTCCATCTTGGATTACAAATACGAGTACAAGATCGACGATTACTAAGCTTAAACACCAAGGCCTTGTTCAAATACATTTACAATACATCCTTCCTCCCCACTTCCTTTGCACTCTAAGGTATTTGAACAGGAACAATGTCATAGGCCTGAGCCCAGGCTGTTAACTCAATTCTTAGAGTAGACAACTAAGTGACCCCTTAAAGGGATATTTGGCAATgatgccctttatctacttccccagagtcagaggaACTCgtagataccatttttatgtcgcTGTGTCAAGTATGAAGGAAGTTCGAGTTAGTttcgcaagccaatgctaactagcattaacacaataactagaaagatgctagcagatacccatagacttccagtcattgcgctaaagctagttagcaattgttaagaacttccttcaaactgcacacagatacataaaaatggtatccacgagttcatctgactctggggaagtagataaatcccaaagtatcccctTAAAGAACTGACAGGTTCTTGAAACTCCAATAACTCTGGAAGCCCCCCAGCCATCCATTCTTTCAGATCAACAAAGGGGCCACAAGAAGTGTTTAGGTATATCTGCAAAAACTGATCAAAGGAACAATGCAGTGTTGAATGCAAAAACAGTCAGGCACACAAGCTAATGCCAGTGGTCTGTATAACTGCTCGAGTAGGTATTTTGATACAACgttaacacacacaaaaatgtaAGTTTAGAGTAGAAAAATAGAACCACTGATATCTGGAAAACACATTTTATACCAATTCAATTTGAAAAGTTGTTGCAAAGCTTTCCTGGAGAATGTACTTCAGAGATCATGTAGATCTGGTGGTTGTAGATTACGCACTTGTTTTACTATCACCTCCACCCTTGAAGAGTCAAAACAAAGAATCAAAGTTTCTATTTTTCTTATAAATTGTGGATTCATTTACATTATTTTCACACATTGACAGCAAAGTCATAATATCGACATACAGTAACTTGACAAAATGTTTGTTGAATAGTAAGAGAGAAATCAAAAGAGATTTCCTTAAATGTTCCTCATAATTTAGCTGAGGTAGAGGAAAGACATTTTTTCAATTAATAAAGGCTTGTTTACATACAGCA

Function

symbol description
aebp1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and collagen binding activity. Involved in negative regulation of transcription by RNA polymerase II and regulation of collagen fibril organization. Located in extracellular exosome. Colocalizes with collagen-containing extracellular matrix. Implicated in Ehlers-Danlos syndrome classic-like 2.

NR:

description
inactive carboxypeptidase-like protein X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980095.1 True 5373 mRNA 0.50 23 39958861 39983075

Neighbor

gene id symbol gene type direction distance location
npc1l1 npc1l1 coding downstream 12283 39935328 ~ 39946578 (-)
gk gk coding downstream 47039 39906570 ~ 39911822 (-)
LOC110525935 LOC106580582 coding downstream 53454 39901532 ~ 39905407 (-)
LOC110525932 LOC106585164 coding downstream 80910 39826260 ~ 39877951 (-)
LOC110525027 LOC106584957 coding downstream 139434 39808201 ~ 39819427 (-)
LOC110525939 LOC106585169 coding upstream 38644 40021719 ~ 40033727 (-)
star star coding upstream 53131 40036206 ~ 40040599 (-)
LOC110525940 LOC106585171 coding upstream 72936 40056011 ~ 40132392 (-)
LOC110525941 LOC106585172 coding upstream 153122 40136197 ~ 40139203 (-)
LOC110525946 atp5a1 coding upstream 211490 40194565 ~ 40204986 (-)
G506806 NA non-coding downstream 6939 39951699 ~ 39951922 (-)
G506805 NA non-coding downstream 11136 39947501 ~ 39947725 (-)
G506802 NA non-coding downstream 26006 39932520 ~ 39932855 (-)
G506795 NA non-coding downstream 53008 39905549 ~ 39905853 (-)
G506639 NA non-coding downstream 341570 39616938 ~ 39617291 (-)
G506865 NA non-coding upstream 65554 40048629 ~ 40048833 (-)
G506866 LOC106563826 non-coding upstream 66228 40049303 ~ 40049566 (-)
G506894 NA non-coding upstream 175966 40159041 ~ 40159271 (-)
G506897 NA non-coding upstream 180109 40163184 ~ 40163407 (-)
G506785 NA other downstream 68930 39887022 ~ 39889931 (-)
LOC110525929 LOC106585162 other downstream 194085 39751726 ~ 39778538 (-)
G506641 NA other downstream 334517 39623685 ~ 39624344 (-)
aopep cssa24h9orf3 other downstream 535371 39313471 ~ 39434971 (-)
G507063 NA other upstream 557584 40540659 ~ 40542329 (-)
G507906 selenop other upstream 1437949 41421024 ~ 41461922 (-)
znf131 znf131 other upstream 1451900 41431651 ~ 41459095 (-)
G508303 NA other upstream 1837780 41820855 ~ 41821210 (-)
G508891 NA other upstream 2161022 42144097 ~ 42144885 (-)

Expression


Co-expression Network