LOC110525943


Basic Information

Item Value
gene id LOC110525943
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40172320 ~ 40178096 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052103.1
ttCTGTTGACAATGAACTCTGATTTTTAAGCTGAGGGGATGATTGTGTCCGAAGGACAGGAAATACACAGTGTAAGGACTGACATCACTGGAGCAAGGAGAGCAGGGTTCAACATAATGTAAACTACGACACCATGCCCATGGTGAGAGGTTTGGCTACAGAGAGGTTGTTTTAAAAGGAGATCCTAAGAAGTTGAATCTCCATGGGGTAAGAATAGTATATCTTCCGTTTGTTATTGATTGTGAATAGGTATGATGAGGTTTGTCTAAATCTTAATAGAGGGACATAATCAAACATATCTGGTGCCACCTCAACCTCGacacctctcttctctcacccttttttctctctcgctctctctctctctttctctcgctctctgcctcaaCCTATCCTTTTTTCTGTCTCCTCTTTCTTCCCATGCGCCACTCTCTGCCCCtcattctcttgctctctctctctctcttgctttctaaACCTGTCCTATCCTGTCTCTTATCTCCTCTGCCCGTGTCACTCTCACAGCAGACGTGTGCTGTCTGCCTGGAAGACTTCAAAGTCAAAGACGATCTGGGTGTGTTGCCATGCCAACATGCCTTTCACAGGAAGTGTCTGGTGAAATGGCTGGAGGTGCGCTGTGTGTGCCCCATGTGTAACAAACCTATCGCAGGACCCCCAGAAAAGCGCCACAGCATAGGAACACTACTGGACGAACTGGTGTAACCATAGCATCCAGCACGGAGGGGGCTCTGCAAGCCAATGTAATCTAGCTCTAACAGGAAGAGAACACTGTTATCTGGTGTAACCTAGCAACCAACAGAAAGAGGACGCTGTTATCTGGTGTATCCTAGAAACCATCCACAGATTACTGTGAAATGGTGTAACCTAGCTACCACCTGGAGAGGACTATAAGAACTGCTGTTACCTAGCAACCAACACAGAGCTGCAGACAGGAGTCTACACCACACTCTGTCTAATCTCCTTCCCAGACACTTCCGCCTTAATGCACGAAGAGTCTGTTGGACCAAAGCGTCAAACTTGGCTTTTGTTAGCAAATAGAAAGGCCAGGAGAAACTCCCAGCGCATAGGCATTGGCTTAATCTACCAACCAATCATCTCCAACAGCACCTTCCCCCTAACCCTCTCTCGTACATGTCTTCCATACGTGTCTTGCCTCCATTTGGAGTCACGCCTCGCAGTCGTGTGATTCGCTCAAATTAAATGATGACAAATACTTTACTCAGTATGGTCACTGTAGAATTCTATGGTCACTCCCACACCCACTAAAGCCAACTTTGAATCATTGGTATCCCAGGCTTATTTGCGCTGTGCGCAATAGCATGGGGACGAGGTTACACTCTGTCTGACAGAATATCTCCATACCCACAtgtcactctttctttctttctttctttctctttgtctctgactgtctaactcttcctctgtctctctttcccctttcctctcactcaccctctctctgctctTGACTTTCTGCCACTCTCTGtctttatttctccctctcttctgatGTCTCTATGCTCTTTCTCaaccttgtctctttctctcccatacTGCCTCAGAGTTGCACGCTAGTTCCAAAGTCAGAAAGAGGGGAAACCTCCAGACTCTCCAGTTGGGAGAGTGGAGGAACAGGCCGGCTGACATGAAGACGAGTGGCACTATCAGAACCATGGGGTTGAGAAAATACACAGTGATGTTCTAATAATGTGCATCACCCTCTCACAATTTCTTTTTTTTGGTTTAATGACTGAAACGTGTTATTTCTTCAGAATGTAGACGATGTTTTGCACTCTAACACTCTGACAGGTTTTTTTGGAAACTTATTACCATTCTACACTACCGCAAATGTAGTTAAAGACTATTCTCAACAACATATTTGTGACGCGCAGGTGGTTTGGTGAACCATGCTCACATGTTTTAGAACCACCTGAAGACTTGTTTTAGCTCCCAGCATGAGcacctaggctttagctcagtagTCTGTTGTGGACCTGAGATATGCAGACAGCCTGGTTTTGACACCTAGCCAATCACATCGATGGATTGAGACATCTAAGTAATCAAAGGCACTACACCTGCCGTTTTCTTTCGTATTAGTGGTGTAGTAAAACCTGTGACGTGGCTTTCATGAAGCAAAGCGTTCTTCATATTTCAATCAAGTTACAGTAGAGTTTAGAGAGTTTCACTGTTTTTGTGTGATTCTTTCTCAAGAACAACTCAGTCACATTGTATACTTTTTGTATAATATGTTTTTACATTTCTTGACGGTGGCATTCAATGGCTCCTTTTCACACATTTTTGTGGagtaatctgttttttaaaactgTTTTACCAGACGAACACAGACCAAGTAAACACTGCCTATATTGAGCACAAAAGCACATTAACACTCCGCTATAGTCTCTGTATTAAGAATGGACTGAATCATCGCTTTGTTTGATCACACTTATGTAATGTGTGACTGTGCCAATGAAGTACAGCACTGTGTTGACCAGGGGATGAAGAAAATTATAAACCCGGGTAATTTgagtcctggatgctgattggctgaaacagtAGTTCAGCCATGTGCATATCAGACAATATGCCACGGGTATGACGCAAAAATACTTGTTTACtcttctaattatgttggtaaccagttacTAATAGCAGTAAATACCCAAGTCCGTTTGGGATATTAGAACAAGGAAcacttttttcccccctctcGGACATTGCACCCACATTAGAACAGCAGAATATGTACTGCAAAGAAATGTTGCACTCTGTTCGAAGCTCTCACCTCCTTTTCatccacaaaacaaaaacaataacaaagatgCCAGGGCGGACAGTGGCGCTGTTTCCCTGATGCGGATTCCATCTCTAAATATAGCACCCCCTACAGCACCGACAGAGATTAGCTTTTCCCAACACCAGCCACATTCCACGTTTTTGGTGTGCATCAATAAATATGACTTTAACAAATGGAGGGGTTTCCTCTTCATCTCAGTTTGTTACTTTTCAAGTTGTTTGTGTCTGGACTAtgttgtgtgcgtgtgcatttgtgtgtgggaACTGAGCACCACCCTCTGGTAAAACCGAAGAGTAACATCTGAAGTCTTATTTCGGTCGGCCACTTGTGGTGACATGCAGCTCTGCCACTTTCCTATCCTACATGTCATCTCTAAATCTGAATATGTcttgatttgaaaaaaaaaaa

Function

NR:

description
RING finger protein 122-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052103.1 True 3232 mRNA 0.44 3 40172320 40178096

Neighbor

gene id symbol gene type direction distance location
LOC118965025 NA coding upstream 6706 40160164 ~ 40165614 (+)
LOC110525942 LOC106585173 coding upstream 17334 40147336 ~ 40154986 (+)
LOC110525934 LOC106580580 coding upstream 250597 39916138 ~ 39921723 (+)
LOC110525933 LOC106585165 coding upstream 270795 39882777 ~ 39901525 (+)
LOC110525928 LOC106585161 coding upstream 422140 39734703 ~ 39750180 (+)
LOC110525945 LOC106585174 coding downstream 7075 40185171 ~ 40191808 (+)
LOC110525947 LOC106585175 coding downstream 26807 40204903 ~ 40215454 (+)
LOC110525949 LOC106585178 coding downstream 78898 40256994 ~ 40259050 (+)
LOC110525953 LOC106584961 coding downstream 108370 40286466 ~ 40309855 (+)
LOC110525028 fabpl coding downstream 136767 40314863 ~ 40317433 (+)
G506112 NA non-coding upstream 5359 40166344 ~ 40166961 (+)
G506039 LOC108412098 non-coding upstream 109706 40061587 ~ 40062614 (+)
G506038 NA non-coding upstream 115379 40056039 ~ 40056941 (+)
G506035 NA non-coding upstream 119627 40052458 ~ 40052693 (+)
G506033 LOC106584485 non-coding upstream 121835 40050225 ~ 40050485 (+)
G506127 NA non-coding downstream 2275 40180371 ~ 40180617 (+)
G506129 NA non-coding downstream 4074 40182170 ~ 40182387 (+)
G506100 NA non-coding downstream 15736 40193832 ~ 40194236 (+)
G506096 NA non-coding downstream 16492 40194588 ~ 40196747 (+)
G505988 NA other upstream 209222 39962652 ~ 39963098 (+)
LOC110525927 smim15 other upstream 492289 39673964 ~ 39680031 (+)
fancc fancc other upstream 860446 39269915 ~ 39312098 (+)
G499111 NA other upstream 6020583 34151140 ~ 34151737 (+)
G506095 atp5a1 other downstream 18704 40196800 ~ 40203886 (+)
G506281 LOC106585187 other downstream 366767 40544863 ~ 40547513 (+)
G506285 NA other downstream 387971 40566067 ~ 40566429 (+)
fbxl17 fbxl17 other downstream 390630 40568637 ~ 40886427 (+)

Expression


Co-expression Network