LOC110525946 (atp5a1)


Basic Information

Item Value
gene id LOC110525946
gene name atp5a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40194565 ~ 40204986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606473.2
TGCGGATGATCCGTTTCAATCTTTCTACATTCAAGCGGATCTAGCAAGCACTGTGCTGGCAGGCAGCTGCTTCGGTGACAAAGCGTCGATGGCTCGGTGTTTTCTGAAGGAACATTTAGGAAATGTACCACAAATAGCCACTAGGTTGCGCCATAACCCCTGTAGAATGTTTTTTCAGCCAGAGTAATTCATAGATAAGTGCACTCCGCTGCAGTAGATGGCGGTAATGCTTTGAAATGACAGCCTGACATCACGGATGacataaaaagaagaagaaggggTTCGTTTTCGGCCATTCGCACACCCTCCAAGTACAGCTAGCTGGTCTTTGCAGGTGGTGGAGGACAAGTCCCATTCGAAATGTTATCTGTGCGAGTTGCAGCGGCTCTGGCCAGGAGCCTGCCCAGACGTGCTGGATTTGTGTCCAAGAATGTTGCCGCCGCCTGCGTAGGAGTGaatcacctccacacacacagaccatgtCTTGCTGCGAAGACCGGCACTGCCGAGGTGTCCTCCATCCTGGAGGAGAAGATCCTGGGTGCTGACACCAGTGctgatctggaagagactggtcgtgTGCTGTCCATTGGTGACGGTATCGCCAGAGTGTATGGTCTCAGGAATGTTCAGGCTGAGGAGATGGTGGAGTTCTCCTCTGGGCTCAAGGGTATGTCTCTGAACTTGGAGCCTGACAATGTTGGTGTTGTGGTGTTTGGTAATGACAAGCTGATCAAAGAGGGTGACATTGTGAAGAGGACTGGTGCCATCGTGGACGTACCAGTGGGTGTGGAGCTGCTGGGTCGTGTGGTGGACGCTCTGGGCAATGCCATCGACGGGAAGGGTCCTCTTGGGTCGAGCATCCGTAGGCGTGTGGGTCTGAAGGCCCCTGGCATCATCCCCCGTATCTCTGTGAAGGAGCCCATGCAGACGGGTATCAAGGCCGTGGACAGCCTGGTGCCCATTGGCCGTGGCCAGCGTGAGCTGATCATCGGTGACCGGCAGACTGGCAAAACTGCTATTGCCATTGACACCATTATCAACCAGAAGCGTTTCAACGAAGGCCAAGATGAGAAGAAGAAGCTGTACTGTATCTACGTTGCCATTGGTCAGAAGAGATCCACTGTGGCCCAGCTGGTGAAGAGGCTGACTGACGCTGATGCTATGAAATACACCATTGTGGTGTCTGCTACAGCCTCTGATGCTGCTCCCCTGCAGTACCTGGCCCCATATTCTGGCTGCTCCATGGGAGAGTTCTTCAGAGACAACGGCAAGCACGGCCTCATCATCTATGATGATTTGTCCAAGCAGGCTGTAGCCTACCGTCAGATGTCCCTGCTGCTGCGTCGTCCCCCTGGTCGCGAGGCCTACCCCGGTGACGTGTTCTACCTACACTCCCGTCTGCTGGAAAGAGCTGCCAAGATGCACGACAACTTCGGAGGCGGCTCCCTGACCGCTCTGCCCGTCATTGAGACCCAGGCTGGAGACGTGTCTGCCTACATCCCTACCAACGTCATCTCCATCACTGACGGGCAGATCTTCTTGGAGACTGAGTTGTTCTACAAAGGTATCCGCCCAGCCAtcaatgtgggtctgtctgtgtcCAGAGTCGGATCGGCTGCCCAGACCAAGGCCATGAAGCAGGTGGCTGGTACCATGAAGCTAGAGTTGGCCCAGTACCGTGAGGTGGCTGCCTTTGCCCAGTTCGGCTCTGACCTGGACGCTGCCACCCAGCAGCTGCTCAACAGGGGTGTCCGCCTCACTGAGTTGCTCAAACAGGGACAGTACTgcCCCATGGCCATTGAGGAGCAGGTGACAGTCATCTACGCTGGTGTCAGAGGTCACTTGGACAAGATGGACCCTTCCAAGATCACCAGGTTTGAGAAGGCCTTCCTTGTACACGTCCTCAGCCAGCACCAGGACCTGCTCACCACCATCAGGACCGATGGTATGATCTCACCGACAGCTGACGCCAAACTGAAGGAGATTGTGTTGACCTTCCTGTCCAGCTTTGAGTAAAGAGCGAAACTGCTCCTGATCCTTCAGTGTGCTTACGGTCTGTCGCATTGTCCTAATATTATATGTATGTGAAACACTGAAGGCCAGAACCTCAATGTACAGATTTCTCCTAAGAAGAAATAAAATTGTACAACCCTAGAGAGCTGTGGTAAAATTTGACTGTTGCCGTGGTAGACTGTGCCGGTCCAGCAGATTATCCAGTTGAAGGGAATAAAATGTCATGTGAAAAATAATTCCTGCGCTCTGTTCTAATGCAGTAACTGTTTCGCCCACTGTGGGTCTTTATTTACTCAAACAACTCTAAATATCTTGTGACTTTGTTCATGAATTTCATGAGTTAAAATAAACAAATTTGGGTGGTCTCAATTACAGGATATCAAAATCGTCACTTTTGCATCACAAGAAATGTAGCACAATCAACCATAAAGCATTTCATTGTTGGAAAGAAATGTATGGCATTGATTGTGTTTAGCAACTGTTGGAATGTCTATTGGGAAATATCTGTCGCCGGCAGAGCTCATGAGTGTCCAGTTTCTGTAAAGCTGGAATGGTGGGTGTAACTCATTTGATATGATGGAAATGAAAGTATCCACACTTATTGTAAAACAGACATGATTACGAGAGGTATATCTAATACAGCCTCTCACCCATACATCTGGACCAATACAGCCCTTTTTCGTATTGAAACAATGGCAACCCCAGTAAGTCGGCACATGATTGTCAAAATGTTATTACTCTTAGTAATACAATTTGATCTTGCATTTCATGTAAGACCGAACTCTGAAAATGATGGGTTATTCATTTTGGAGTTTTACTTGTCAAATCCTTTGCTACAGTCAGACATAAGGTCATTCATTTACCTCCCCGCTGCAATGTTAGTTTGTCCACTAGAGTGTGGTAGTTGATCTGGTTGTCTGCTCGCATGCGGTCAATGTCATCTGAATTACATGTTATTTCTAGTAGTTTCTTTTCACTAAACTGTTATATACAATTAGTGTATTTAACAGCATTTTCCCAGTTGATGCATTTGAACACAGTGCATTGCTTGACAAGCGTGAGCGCAGTGTGTCAAGAGTATTAATGGGGCTTCTGTCAATGAAGGCATGTCTGGGTCAAAAGTCTCTTTCGTAGCCTGGTGAGAGTGGCTAGGATCAGAACAAGCTCAGTGATAAAGATATGGTTACATTTATCAAAGTGAAACACGAGTCTGATCACAAATTGAAACTGAGCGAGTCCAACCTGAACAGAGATGAGATCTTCAAGTTTGAGAACACCAAGTGGAAgttaactggttaaataaaccATATGAATGTG

Function

symbol description
atp5a1 Enables ATP binding activity and proton-transporting ATP synthase activity, rotational mechanism. Acts upstream of or within lipid metabolic process. Located in membrane and mitochondrion. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 22 and mitochondrial complex V (ATP synthase) deficiency nuclear type 4. Orthologous to human ATP5F1A (ATP synthase F1 subunit alpha).

NR:

description
ATP synthase subunit alpha, mitochondrial-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0005524 ATP binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02132 ATPeF1A, ATP5A1, ATP1; F-type H+-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606473.2 True 3333 mRNA 0.48 11 40194565 40204986

Neighbor

gene id symbol gene type direction distance location
LOC110525941 LOC106585172 coding downstream 55362 40136197 ~ 40139203 (-)
LOC110525940 LOC106585171 coding downstream 62173 40056011 ~ 40132392 (-)
star star coding downstream 153966 40036206 ~ 40040599 (-)
LOC110525939 LOC106585169 coding downstream 160838 40021719 ~ 40033727 (-)
LOC110525938 aebp1 coding downstream 211490 39958861 ~ 39983075 (-)
LOC110525948 LOC106585177 coding upstream 11169 40216155 ~ 40257079 (-)
LOC110515628 LOC106584960 coding upstream 64304 40269290 ~ 40272441 (-)
mrps27 mrps27 coding upstream 76645 40281631 ~ 40287046 (-)
LOC110525952 LOC106585180 coding upstream 88974 40293960 ~ 40303383 (-)
LOC110525954 fabpl coding upstream 176197 40381183 ~ 40383687 (-)
G506915 NA non-coding downstream 10457 40183674 ~ 40184108 (-)
G506914 NA non-coding downstream 11237 40183051 ~ 40183328 (-)
G506910 NA non-coding downstream 17138 40177217 ~ 40177427 (-)
G506901 NA non-coding downstream 27922 40166356 ~ 40166643 (-)
G506899 NA non-coding downstream 29439 40164695 ~ 40165126 (-)
G506921 NA non-coding upstream 54343 40259329 ~ 40259529 (-)
G506945 NA non-coding upstream 62758 40267744 ~ 40267953 (-)
G506949 NA non-coding upstream 68937 40273923 ~ 40274246 (-)
G506951 NA non-coding upstream 70075 40275061 ~ 40275325 (-)
G506785 NA other downstream 304634 39887022 ~ 39889931 (-)
LOC110525932 LOC106585164 other downstream 356405 39826260 ~ 39877951 (-)
LOC110525929 LOC106585162 other downstream 429789 39751726 ~ 39778538 (-)
G506641 NA other downstream 570221 39623685 ~ 39624344 (-)
aopep cssa24h9orf3 other downstream 771075 39313471 ~ 39434971 (-)
G507063 NA other upstream 335673 40540659 ~ 40542329 (-)
G507906 selenop other upstream 1216038 41421024 ~ 41461922 (-)
znf131 znf131 other upstream 1229989 41431651 ~ 41459095 (-)
G508303 NA other upstream 1615869 41820855 ~ 41821210 (-)
G508891 NA other upstream 1939111 42144097 ~ 42144885 (-)

Expression


Co-expression Network