LOC110525949 (LOC106585178)



Basic Information


Item Value
gene id LOC110525949
gene name LOC106585178
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40256994 ~ 40259050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021606478.2
TAGTTACGTTCCGTGCTAGTGAAAGGAACACATTATTGGCAGCTCTTGTTTTGCTACAGCATACCGGTACGGACTGAATTTAGTGCAACACAAAACCTTTTTCCGGTCTCTATCGTGCGAACTTCGGCAAGAAGATGACTAAGGGAACGTCGTCATTTGGTAAACGTCGCAACAAGACGCACGCCCTGTGTCGTCGGTGCGGCTCCAAGGCATACCACCTCCAGAAGTCCTCCTGCGGAAAGTGTGGCTACCCCGAAAAGCGCAAGAGAAAGTATAACTGGAGTGCCAAGGCCAAGCGACGCAACACTACCGGAACTGGCCGTATCAGACACCTGAGGGTCGTCTACCGCAGATTCAGGAATGGATTCCGTGAGGGAACTGTCCCTAAGCCTAAGAGGGCAGCAGTGGCTGCCTCTAGCGCTTCCTAGGCTGAGTTTGAAATAAATTCATCATAAAACAA
>TU574667
CTGAATTTAGTGCAACACAAAACCTTTTTCCGGTCTCTATCGTGCGAACTTCGGCAAGAAGATGACTAAGGGAACGTCGTCATTTGGTAAACGTCGCAACAAGACGCACGCCCTGTGTCGTCGGTGCGGCTCCAAGGCATACCACCTCCAGAAGTCCTCCTGCGGAAAGTGTGGCTACCCCGAAAAGCGCAAGAGAAAGTATAACTGGAGTGCCAAGGCCAAGCGACGCAACACTACCGGAACTGGCCGTATCAGACACCTGAGGGTCGTCTACCGCAGATTCAGGAATGGATTCCGTGAGGGAACTGTCCCTAAGCCTAAGAGGGCAGCAGTGGCTGCCTCTAGCGCTTCCTAGGCTGAGTTTGAAATAAATTCATCATAAAACAA

Function


NR:

description
60S ribosomal protein L37-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021606478.2 False 460 mRNA 0.51 4 40256994 40259050
TU574667 True 387 TUCP 0.52 4 40257067 40259050

Neighbor


gene id symbol gene type direction distance location
LOC110525947 LOC106585175 coding upstream 41540 40204903 ~ 40215454 (+)
LOC110525945 LOC106585174 coding upstream 65186 40185171 ~ 40191808 (+)
LOC110525943 NA coding upstream 78898 40172320 ~ 40178096 (+)
LOC118965025 NA coding upstream 91380 40160164 ~ 40165614 (+)
LOC110525942 LOC106585173 coding upstream 102008 40147336 ~ 40154986 (+)
LOC110525953 LOC106584961 coding downstream 27416 40286466 ~ 40309855 (+)
LOC110525028 fabpl coding downstream 55813 40314863 ~ 40317433 (+)
LOC118965077 NA coding downstream 75289 40334257 ~ 40335548 (+)
LOC118964866 fabpl coding downstream 92362 40351412 ~ 40354009 (+)
LOC110525029 fabpl coding downstream 111115 40370165 ~ 40372761 (+)
G506096 NA non-coding upstream 60247 40194588 ~ 40196747 (+)
G506100 NA non-coding upstream 62758 40193832 ~ 40194236 (+)
G506129 NA non-coding upstream 74607 40182170 ~ 40182387 (+)
G506127 NA non-coding upstream 76377 40180371 ~ 40180617 (+)
G506157 NA non-coding downstream 120 40259170 ~ 40260881 (+)
G506164 LOC106584960 non-coding downstream 10235 40269285 ~ 40271231 (+)
G506165 LOC106584960 non-coding downstream 12274 40271324 ~ 40272651 (+)
G506167 NA non-coding downstream 15002 40274052 ~ 40274270 (+)
G506169 NA non-coding downstream 19972 40279022 ~ 40279306 (+)
G506095 atp5a1 other upstream 53108 40196800 ~ 40203886 (+)
G505988 NA other upstream 293896 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 508514 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 576963 39673964 ~ 39680031 (+)
fancc fancc other upstream 945120 39269915 ~ 39312098 (+)
G506281 LOC106585187 other downstream 285813 40544863 ~ 40547513 (+)
G506285 NA other downstream 307017 40566067 ~ 40566429 (+)
fbxl17 fbxl17 other downstream 309676 40568637 ~ 40886427 (+)
G507768 LOC105030512 other downstream 1210501 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1870175 42129225 ~ 42131940 (+)

Expression



Co-expression Network