LOC110525953 (LOC106584961)


Basic Information

Item Value
gene id LOC110525953
gene name LOC106584961
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40286466 ~ 40309855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980104.1
TGCGCTGGGTAGGGACAAAGAGAATAGTTAGCGATGAGTTTCTTTGGATAGCTGTCTTACCCAGATTTTGATGATCTTTCTCTCTTGCGTCCCATAATTTGGTGTCTGTGTATGGTGTGGAAAGTAGACATCTTCTAGCTGTAGGACATAAACAAGAATGACCACACGTTACATAGAGTAGACAATGGACTCTGAAGGTACTGTGGCTGCGGATGAGCTGAAGAAACAGCAGGCTGTCCTCCCATAGATCTCAGCTGCCCTGGCAAGACTCTTTTGCTTCCCCTGCAAAAAAGGAGCCAAAAGTAGAGATGACTGGAGCCGTTGTGTCCGTGTGTCTACTTtacgtcctgtctgtctgttcagccTGCTACATCTCCAACTGTCCCATCGGGGGCAAGAGGTCCATAATGGACGCTCCACAGCGCAAGTGCATGTCTTGTGGGCCAGGGGAGCAGGGCCGCTGCTTTGGCCCCAGTATCTGCTGTGGGGAGGATGTGGGCTGCTGGATGGGCTCCCCGGAGACGGCACACTGCATGGAGGAGAACTACCTGCCCACCCCCTGCCAGGTGGGAGGGAGACCCTGTGGATCTGATACAGCACGCTGTGCCTCACCGGGAGTCTGCTGTGACTCAGAGGGCTGCAGTGCGGATCAATCTTGTTTCGCTGAGGAGGAAGGCGACAATCAAATCGGCCAATCAGAGGGCAGCAACTCTGCAGACGTCATCCTCAGGCTCCTGCACTTGGCTGACCACACGCCTCCTCATAGAGTCCACCAATGAGCTGCAAGTGACACCAGGGTTCCACCGGGGTCACTTGAGAGATTGGTTGATAGGATTTGTAGTTCAAAGTTAGGATTTATAGTTCAAAGTTACCTAGATGTAGTTCATAGTTCACCCACCCATTTACTGACCTTCTTCAGTATATATTGGCAACCTCACTGGATGGGACCTAGCTAAGAATTTAACTCTGTGTTTGACATTTAATGTGTATCAAAACACTGGAGTTAAATTCTTAGCTAGGACCCTGAGCACTCCTCTGTAGATTGCCTTTATATTGCATACTTAAATATTGtagctatatactgtatgtacagaaaTAGCTGTAACAATTCTAATACGTGTAAAGAGTCCAAATGTGTATGTTAATAAAGCTTGTGCGAGTATG
>XM_036980105.1
TGCGCTGGGTAGGGACAAAGAGAATAGTTAGCGATGAGTTTCTTTGGATAGCTGTCTTACCCAGATTTTGATGATCTTTCTCTCTTGCGTCCCATAATTTGGTGTCTGTGTATGGTGTGGAAAGTAGACATCTTCTAGCTGTAGGACATAAACAAGAATGACCACACGTTACATAGAGTAGACAATGGACTCTGAAGGTACTGTGGCTGCGGATGAGCTGAAGAAACAGCAGGCTGTCCTCCCATAGATCTCAGCTGCCCTGGCAAGACTCTTTTGCTTCCCCTGCAAAAAAGGAGCCAAAAGAGATGACTGGAGCCGTTGTGTCCGTGTGTCTACTTtacgtcctgtctgtctgttcagccTGCTACATCTCCAACTGTCCCATCGGGGGCAAGAGGTCCATAATGGACGCTCCACAGCGCAAGTGCATGTCTTGTGGGCCAGGGGAGCAGGGCCGCTGCTTTGGCCCCAGTATCTGCTGTGGGGAGGATGTGGGCTGCTGGATGGGCTCCCCGGAGACGGCACACTGCATGGAGGAGAACTACCTGCCCACCCCCTGCCAGGTGGGAGGGAGACCCTGTGGATCTGATACAGCACGCTGTGCCTCACCGGGAGTCTGCTGTGACTCAGAGGGCTGCAGTGCGGATCAATCTTGTTTCGCTGAGGAGGAAGGCGACAATCAAATCGGCCAATCAGAGGGCAGCAACTCTGCAGACGTCATCCTCAGGCTCCTGCACTTGGCTGACCACACGCCTCCTCATAGAGTCCACCAATGAGCTGCAAGTGACACCAGGGTTCCACCGGGGTCACTTGAGAGATTGGTTGATAGGATTTGTAGTTCAAAGTTAGGATTTATAGTTCAAAGTTACCTAGATGTAGTTCATAGTTCACCCACCCATTTACTGACCTTCTTCAGTATATATTGGCAACCTCACTGGATGGGACCTAGCTAAGAATTTAACTCTGTGTTTGACATTTAATGTGTATCAAAACACTGGAGTTAAATTCTTAGCTAGGACCCTGAGCACTCCTCTGTAGATTGCCTTTATATTGCATACTTAAATATTGtagctatatactgtatgtacagaaaTAGCTGTAACAATTCTAATACGTGTAAAGAGTCCAAATGTGTATGTTAATAAAGCTTGTGCGAGTATG
>XM_021606484.2
AGTGGTTGTCAGGGGTCCGTGTCACTCCCGGAGAGGGTGTATAAGAGGTCTGGGTTCCACGGAAGATACAGAACTTCAGCATTCACCTGGGAGTCACTCCGGAACGAGCCAACGCATTCGCCTTGTGCTGTACACTGGGAGATCAGCAATAGAGATGACTGGAGCCGTTGTGTCCGTGTGTCTACTTtacgtcctgtctgtctgttcagccTGCTACATCTCCAACTGTCCCATCGGGGGCAAGAGGTCCATAATGGACGCTCCACAGCGCAAGTGCATGTCTTGTGGGCCAGGGGAGCAGGGCCGCTGCTTTGGCCCCAGTATCTGCTGTGGGGAGGATGTGGGCTGCTGGATGGGCTCCCCGGAGACGGCACACTGCATGGAGGAGAACTACCTGCCCACCCCCTGCCAGGTGGGAGGGAGACCCTGTGGATCTGATACAGCACGCTGTGCCTCACCGGGAGTCTGCTGTGACTCAGAGGGCTGCAGTGCGGATCAATCTTGTTTCGCTGAGGAGGAAGGCGACAATCAAATCGGCCAATCAGAGGGCAGCAACTCTGCAGACGTCATCCTCAGGCTCCTGCACTTGGCTGACCACACGCCTCCTCATAGAGTCCACCAATGAGCTGCAAGTGACACCAGGGTTCCACCGGGGTCACTTGAGAGATTGGTTGATAGGATTTGTAGTTCAAAGTTAGGATTTATAGTTCAAAGTTACCTAGATGTAGTTCATAGTTCACCCACCCATTTACTGACCTTCTTCAGTATATATTGGCAACCTCACTGGATGGGACCTAGCTAAGAATTTAACTCTGTGTTTGACATTTAATGTGTATCAAAACACTGGAGTTAAATTCTTAGCTAGGACCCTGAGCACTCCTCTGTAGATTGCCTTTATATTGCATACTTAAATATTGtagctatatactgtatgtacagaaaTAGCTGTAACAATTCTAATACGTGTAAAGAGTCCAAATGTGTATGTTAATAAAGCTTGTGCGAGTATG
>XM_021606482.2
CCCGGAGAGGGTGTATAAGAGGTCTGGGTTCCACGGAAGATACAGAACTTCAGCATTCACCTGGGAGTCACTCCGGAACGAGCCAACGCATTCGCCTTGTGCTGTACACTGGGAGATCAGCAAAGATGACTGGAGCCGTTGTGTCCGTGTGTCTACTTtacgtcctgtctgtctgttcagccTGCTACATCTCCAACTGTCCCATCGGGGGCAAGAGGTCCATAATGGACGCTCCACAGCGCAAGTGCATGTCTTGTGGGCCAGGGGAGCAGGGCCGCTGCTTTGGCCCCAGTATCTGCTGTGGGGAGGATGTGGGCTGCTGGATGGGCTCCCCGGAGACGGCACACTGCATGGAGGAGAACTACCTGCCCACCCCCTGCCAGGTGGGAGGGAGACCCTGTGGATCTGATACAGCACGCTGTGCCTCACCGGGAGTCTGCTGTGACTCAGAGGGCTGCAGTGCGGATCAATCTTGTTTCGCTGAGGAGGAAGGCGACAATCAAATCGGCCAATCAGAGGGCAGCAACTCTGCAGACGTCATCCTCAGGCTCCTGCACTTGGCTGACCACACGCCTCCTCATAGAGTCCACCAATGAGCTGCAAGTGACACCAGGGTTCCACCGGGGTCACTTGAGAGATTGGTTGATAGGATTTGTAGTTCAAAGTTAGGATTTATAGTTCAAAGTTACCTAGATGTAGTTCATAGTTCACCCACCCATTTACTGACCTTCTTCAGTATATATTGGCAACCTCACTGGATGGGACCTAGCTAAGAATTTAACTCTGTGTTTGACATTTAATGTGTATCAAAACACTGGAGTTAAATTCTTAGCTAGGACCCTGAGCACTCCTCTGTAGATTGCCTTTATATTGCATACTTAAATATTGtagctatatactgtatgtacagaaaTAGCTGTAACAATTCTAATACGTGTAAAGAGTCCAAATGTGTATGTTAATAAAGCTTGTGCGAGTATG

Function

NR:

description
isotocin-neurophysin IT 2

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005185 neurohypophyseal hormone activity molecular_function

KEGG:

id description
K05243 OXT; oxytocin-neurophysin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980104.1 False 1164 mRNA 0.49 5 40286466 40309855
XM_036980105.1 False 1161 mRNA 0.49 5 40286466 40309855
XM_021606484.2 False 1010 mRNA 0.50 4 40308230 40309855
XM_021606482.2 True 981 mRNA 0.50 4 40308256 40309855

Neighbor

gene id symbol gene type direction distance location
LOC110525949 LOC106585178 coding upstream 27416 40256994 ~ 40259050 (+)
LOC110525947 LOC106585175 coding upstream 71012 40204903 ~ 40215454 (+)
LOC110525945 LOC106585174 coding upstream 94658 40185171 ~ 40191808 (+)
LOC110525943 NA coding upstream 108370 40172320 ~ 40178096 (+)
LOC118965025 NA coding upstream 120852 40160164 ~ 40165614 (+)
LOC110525028 fabpl coding downstream 5008 40314863 ~ 40317433 (+)
LOC118965077 NA coding downstream 24484 40334257 ~ 40335548 (+)
LOC118964866 fabpl coding downstream 41557 40351412 ~ 40354009 (+)
LOC110525029 fabpl coding downstream 60310 40370165 ~ 40372761 (+)
LOC110526900 fabpl coding downstream 105012 40414867 ~ 40417444 (+)
G506170 NA non-coding upstream 6852 40279385 ~ 40279614 (+)
G506169 NA non-coding upstream 7160 40279022 ~ 40279306 (+)
G506167 NA non-coding upstream 12196 40274052 ~ 40274270 (+)
G506165 LOC106584960 non-coding upstream 13815 40271324 ~ 40272651 (+)
G506164 LOC106584960 non-coding upstream 15235 40269285 ~ 40271231 (+)
G506195 NA non-coding downstream 913 40310768 ~ 40311208 (+)
G506216 NA non-coding downstream 85490 40395345 ~ 40406885 (+)
G506198 fabpl non-coding downstream 99398 40409253 ~ 40410979 (+)
G506250 NA non-coding downstream 162146 40472001 ~ 40472427 (+)
G506095 atp5a1 other upstream 82580 40196800 ~ 40203886 (+)
G505988 NA other upstream 323368 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 537986 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 606435 39673964 ~ 39680031 (+)
G506281 LOC106585187 other downstream 235008 40544863 ~ 40547513 (+)
G506285 NA other downstream 256212 40566067 ~ 40566429 (+)
fbxl17 fbxl17 other downstream 258871 40568637 ~ 40886427 (+)
G507768 LOC105030512 other downstream 1159696 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1819370 42129225 ~ 42131940 (+)

Expression


Co-expression Network