LOC110525957 (LOC106585182)


Basic Information

Item Value
gene id LOC110525957
gene name LOC106585182
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40476037 ~ 40489852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606490.2
agagaaaaggagagggcagaaagggatagagacagggtagagagggagagggatagagagagggtagagaggacgagagagagggttgagagagtgagggaaagagagccACGAGGAGGGGTTGTGAGTCTGGATGTATGCAGTAACTTGGTGGGACTGGGAGGAAAGGATATTGGTACTGGGATGACCCTCCACCAACAAAGAGACACTGGAGGGACCAAAACAGACAATCACAACAACCCTCCAAACCACAACCCACCCAAAATCCTGCCTGTCTCTGGCAAACTAGAGCAGAACAACTCCGGGCTGGTTCGTCCTTCTGCCTTcaaaccagtggttcccaaaagCTTTCACTCCATGCAGAACCTCGTAGGCCAAACCAGTAGTGGTGAGGGTAGGGGTGCGGGGGGGCGTAGAgaaggaggagcagggggaggagaACCAGGGGCAGTTCCAGAGGCCCTCCTTCTAGACCAGGACAGCCCAGGAAGAGGCAGCTTCCGGGCAGAGGGAGCAGGAGTGGGTGAGGGTAAAGGAGGGGTCCAGGGGGGGATGTCAGATTCGGGGAGAAACTCCTTGACCAGCCTGCCCACCTACACAGGCTCTGGGTCGGGCTATGTGCCCCCAGCGGCCCTGGGTACTCTCAGTGCTTCTACCAGCCATATCAACAGACTGGGGACCACAGCTGGAGCTGCAGTGGCTCAGGACAAGCTGGAGAAACCAGGCTACCAGAATGGGCTGAGTGCCTCGGACAGTGGCCACTCCTCTTCAGGAAAGAGCTCCTCATCCTATCAGAGGCTCTGCCACCTGGGGGACACCCCAGCACCCCTTCGCCCCTCGCCTTCCTCTGATGACGTCATCCAAGACCTGGAGGACCGGCTCTGGGAGAAGGAGCAAGAGgtGCAGCACATGCATCGTAACTTGGACCAGAGCGAGGCAGCCATCGTCCAGGTTTTTGAGGAGAAGCAGCGCgtgtgggagagacagatggaagaGCTGAGACAGAACTATGCCTCCCGCCTGCAGCAGGTGACGCGCCGCGCCCAGCGCTCCCAGAATGCCCTGCAGGCCCAGATCACCCGTCTGTCGCAGGACAAGCGGCGCCTGCAGGAGGAGATGCCTGCCTTGCTGGCCCAGAGAGAAGAGCTGGAGAGGAAGTGTCTGGACTTCAGGAAGGAGCAGGCCGACATACTGCCACGCCTGGAGGAGACCaagtgggagGTATGTCAGAAAGCGGGGGAGATCTCCCTGCTGAAGCAGCAGCTGAGGGAGAGCCAGGTGGAGGTGACCCAGCGGGCGGGAGAGATGGTGGCCCTCAGGGGTCAGCTGAAAGAGGCCAACGCTCAGCTGAGAGACCGGGAGGAGGTCATGCTGGGCCTCAAGGACTCCTACACCAACAAGAGCCTGGAGCTGGAGCGCTGCCAGGGAGAGCTGAGAAGGACGCTGACTGAGGTGTCTATCCTGAGGGAGAAGCTGGGTGTGTTTGAGGCTGAGGTTCTGGGTCTTAAACGAACTCTTGGGGAGCTGGGCGGAGCGGTTGATCCTGCCATAACCCAAACCCTAGCAGCAGGAAGGCTACTCCCCCCCTGGGGGGCTCCATACTGCCTCCGCACCCCCACTGAGCCCTCATCCACCCCCCTTACCCACACCTCAGATGCCCTGCTCAGCTTTCAGAGTGATGAGGCAAAAGCCCAGAGgcaagagacacagagacaggagaggcagCAGCGTGAAGAGGCCCAGTGGTGTGACATGCAGCCACGCCAGGAGGCCCATCTCCATCAGGAATCCCAACTGCGTAAGGAAGCTCAACTTCGTCAGGAAGCCTACTTGCGTCAGGAGGCCCAGCAGCAGCAGCGCCAGGAGGCCCAGTGGGAGGAATCAGGGAACCTGCGTGAGCAGCTGGAACAGCTCCAGGGGGCCTTACGTCTAGAACGTCAGCAGAGAGAGCTCCAGGCCCACAGTTTTGACCAGGAGCGACACACCTGGATTGACGAGAAGGAGCGTGTGCTGAAATACCAGGCGCAGCTTCAGGTCAGCTATGTGGAGACTCTACAGAAAAACCAGGCTCTAGAGCAACAGGTGGGACAGCTGGGGACCAAACTtaccccctccccctcatctTCCATCTCCCCTCCCCCACCACCAGCACTGTCAAccctccctcccctgccctcAGTCCCTCTCCCAGCCCCCATTGCACTCACCCTCTCACCCCCGCACTGTGAGGACCAGAAAggccccccttccctcctccagcTGCCCCcaccctgggcaggtccctcgcGCCTGGAGAGGATAGAGTCCACTGAGATTTAGAGAGGCTCCATTCCACTGAAAATCAACTTGATTACAAACAACAAAAGACATATTAAGCTACAAAACAGAACTGCAACGCAAACTGTACCATTGAATATTGTACAGTTAAAACAACCAATGCAAACTGAACAGCAGAGAACAATACAATAGAGTTTAGACTATGAACACAAACTATAATTGATTACAATACAGTATTAAAAGAAAACAACAGAAAAATAAAATCAGCGGCTACATTATAGAATGCAATATAAACTACATTACAAGAAAAGTACACTATATCTGAATATTAAAACTAAACTACTCAATCCTGTCAATGATAGAGTATCCATTGCTTACCAGGCAGTCTTGGTGGGAAGCAGTGACACTCAAAATGGAAGCAAGATTGGCACCAAAAGTTCCAAGATGATAACATTCTAGTTTGAATGCAAATAATCATGTTATTGTTCTGGAAGGCTTGGTACCAACCTGGAGGGTAGTTTGCCAAACTGCATGTCTATGATAATGGGACATGAAGTCGGGGAAACCAGAATCATATTTTAGAGGATAATCAGGGGCGATGTTTTGCAGAATGTGCTTGTCTTTTCCATTTCTGGGACGATGTTTCTCTCAGAAGGTGTGTGAGAGGATTGTGATGAGAAAGTGGATGTGTCGGAAAGTGACAATTGGGGATGAAAAATCAAAAGTGTTTTTTAATAGGAGGAAATTAGGAGAATAGTAGTATAGTTGATTGGTAGTTGTTTGGTTGGTTCCATTTCAGCTCATTTCCTGAAGTGGCTTGAGATTAAATTTAGTCGAACTCTGAATGATTCTTAATGTAGATTCAGGGATATTGGAGAACCTCCCACTAGGCACAGATGTCATTTCAACGTCTCTTCGACATTGGTTCttcgtcatttcattgaaatgatgtggaaacaacattgattaaactagtatgtgcccagtgggctgGCTCTCTGGCACTACAAACTGTCCGCGGTGACTAAAGATGAACACAAGGGGTCAGCATTGAGCTGTGTCAGAGCTCCCCACCAGCAGAGAAAATTACTTGAAAATGACTGTTTATTCCGGGGTCTGCgaaagagacacagaaacacactggctttactcggATAGTGTCATTATTTATACTTTCAGATCATGCTTTTATGACcaagagtgggaggagaggagaagaccaaGTGACAAGAGTGAGTAGAAAGAATGAGGTGAAAAAAGTGAGGACGGGGGCTGAAACTGCCTTCATATGTAAAAATAGGAGGCAAGTGAGAGTACAATAGTGAAAGAATGAGAGGCTTGGTCCAGAGAAAGGCTGAATTAACTTTCACCCACCCAGCCCTTTCAAATCAGCAAAGGTGCAAGTTTTCAAAATGGGATGCATCCCAAAGGAAGACATTGCCTTCCTGAGGTAGGGTTCAGACTTACTGCACTTTGTCCTATTGAGGAGATCAGACCGGAAGTAGACTCAATTAGATGTGAATAGTATGGCTTTTATGTGTTCATGTGTATTCCAGCATACCAAGACACTGCGTGTGAATATTTAATGAAATCAAATTATTACTATTacaattgttattattattcttGTGAATCGGACAAGTATTATAAGCTTTTCTTGAATGTTTCTTAACTGTATATGAATGCTAGTTTAGATCTACTACATGGCTCAACCATATTGTAAGAATATGTCGAACATCAACTACTAACAATATCAACTATATCCAAAGCCATTGTTAGTTTCTTTTTTCTTGTTGGTGATGTCAACGTAATTACTGTATTGTTTTAGAGAGGAAATTGCCACCAATGTTTTTGTACTTATTTTAACGGTTTGAATTTATGTTACTGCAATGGCTTGATGAAGATCACTCCTGGGTAAAATCAAACGGAATCAATAAAGATGCAAGTAAA

Function

NR:

description
PREDICTED: leucine zipper putative tumor suppressor 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606490.2 True 4227 mRNA 0.50 7 40476037 40489852

Neighbor

gene id symbol gene type direction distance location
LOC110525958 LOC106585182 coding upstream 129 40469471 ~ 40475908 (+)
LOC110515135 fabpl coding upstream 23875 40449567 ~ 40452162 (+)
LOC110525956 fabpl coding upstream 35126 40438659 ~ 40440911 (+)
LOC110526900 fabpl coding upstream 58593 40414867 ~ 40417444 (+)
LOC110525029 fabpl coding upstream 103276 40370165 ~ 40372761 (+)
LOC110525959 LOC106585184 coding downstream 10805 40500657 ~ 40506112 (+)
avp neu4 coding downstream 27739 40517591 ~ 40519539 (+)
ccl27a ccl28 coding downstream 31122 40520974 ~ 40524282 (+)
slc35d2 LOC106585185 coding downstream 37986 40527838 ~ 40533844 (+)
fbxl17 fbxl17 coding downstream 78785 40568637 ~ 40886427 (+)
G506251 NA non-coding upstream 1898 40473106 ~ 40474139 (+)
G506250 NA non-coding upstream 3610 40472001 ~ 40472427 (+)
G506198 fabpl non-coding upstream 65058 40409253 ~ 40410979 (+)
G506216 NA non-coding upstream 69152 40395345 ~ 40406885 (+)
LOC118965077 NA non-coding upstream 140489 40334257 ~ 40335548 (+)
G506249 NA non-coding downstream 726 40490578 ~ 40490918 (+)
G506248 NA non-coding downstream 1494 40491346 ~ 40491768 (+)
G506247 NA non-coding downstream 2175 40492027 ~ 40493232 (+)
LOC110525949 LOC106585178 other upstream 216987 40256994 ~ 40259050 (+)
G506095 atp5a1 other upstream 272151 40196800 ~ 40203886 (+)
G505988 NA other upstream 512939 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 727557 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 796006 39673964 ~ 39680031 (+)
G506281 LOC106585187 other downstream 55011 40544863 ~ 40547513 (+)
G506285 NA other downstream 76215 40566067 ~ 40566429 (+)
G507768 LOC105030512 other downstream 979699 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1639373 42129225 ~ 42131940 (+)

Expression


Co-expression Network