LOC110525959 (LOC106585184)


Basic Information

Item Value
gene id LOC110525959
gene name LOC106585184
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40500657 ~ 40506112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980112.1
GCTCTTTccttacattagctagctagctagtagtcagtGTTTTGGTTAAATGTATGCCAAAGTGGTCCCTCCAGAGAAAAGCTCAAGTGATTGTATCTTCATATATTTCAGACAGTTCGTGTGAGCTCTTCTACGAGAACATTAGCAGGAAGCACGcaAGTGTGAAGACCATGGTGGTGAATCTCTGCCTGCCACATTTCAAGACCACCATCCagtgtgacaagCTGTGTGCAGATGGGTATGACGTCACCAACCTCCTATCGGCCGACCCAACAGTCCGGAGGCGGGGTTTTAAGCTGGAGTACTTCCTTCGGCCACCTGTTCAGGTGACACTGCAGTTTGGTTTCCAGGTGGAAGTGTGTCGGGTGGATGTGGAGCTGTGGCCCTGGGGGATGGACCGTGGACAGGCCTGCAAGAGGCTGGAGATCAGCACCAGCTCTGATCCCCCACTCCCTCACAACCACAGCCTAGAGCAGGGCCAAAGTCAGGTCCAACAAGGCCAAGAGAAGGGCCAGCAATGGGATCAAGCCAAGTCCCAATTCAAAGGTCACCAATGGAGCCTCCAGGCCCAACAATGGAGCCTACAAGGCCAGGAGAAGAGCCAGCAATGGGCCCAACGTGGCCAAATTCAGAGTCACACAGACACCAGCCAGGGGGATTTCCGCCTAGTGGGACGCTGTGAACTAAGAGAAGAGACCCATGTCAGTTTCTCCCATCCCTGTTTCCGCCCGcgccctccctttccctccctgccACCGCCCCCCCGAGAGGGGTGTAGACAAGAGGAGCTGTGGAGCAGGGGGCCGCTCTCACTAGGCTCTGTGAAGCAGCTCCGTGTGTCAGTGCCGTACGGTGCGGGTGCCTCCGCGATGGGGCTCAAGGCACTGGCAGTGTGGGGGCTGCCTTCTCGCTGCTGCCCCCCAGAGGAGGCGGAGAGGGTGAGAATAGCACATGAGAATGCTAGCCTGAGACCAGCGCCACAGCTTAGCCACTTGGCATCAGCGCAGTCTCCACCTGTCGTTCAACCACAGCCACTGTCACAGACGACAACAGCAACTAGCCTTCTGCAGGTCCCTGAGGATTTCCTGGACCCCCTGACCCAGGAAGTGATGCTGCTCCCTATGCTGCTGCCCAGCGGAGTGTCTGTGGACAGCTCCACTCTGGAGGAGTACCAGAGGAGGGAAGCTACCTGGGGTCGTGTCCCCAACGACCCCTTCACCGGTGTCCCCTTCATCCCTGAGGCACAGGCCCTCCCCAACCCCCACCTGAAGAGCCGCATCGACCGCTTCCTGCTTCagacagggttagaggtcagggaggGGATGGTGGGGAGGCAGGTCCAGGGGGAGAGTCCGCACACCTCCAGGCTCATACCCCCAGAGAGGACTGGGGACAGTGGGGACTCTGCTgtcactactgctgctgctgctatagaGTCAGCCAACCACCAGGGTGCACTTAGCAGAAACAGTGGGACACTCGCACAGACTACCCAAAAACGTGCAGAAAGTGTAAATACTGAGAGGAGCCACTCTACACAGCAAAGGGGAACCGGAGCTTTTAACAACAGGGTGAAGAATGGGAAGGACCGGTGTGCTGGTAAAGTTGGTCATAAAGAAGGGGTAGTGGATAGAGTGAGTCCCCAGGATATAGGGCCAGATTTGgggagtaggaggaagagagagctgGAGGTTTGGGCCACTCTGATCCGCTCTAAGGGAAAGGGTGAGCCCACCGCGGCCAAAGCAGCCTCTGCTAGTGCTGGTCACGCCAAGGAGCTACTTCCTGACTCGAAAAGACTAAGAACAGACACAAACTCTACTATCTCCACAGCCACCGTTCCCAGCGGTAGCTCCCATGAGCATTGTTCGTCTGCCAGTCTAGACCATGAGCAGCGTTTGTCTGCCAGTCTAGACCAGGCCCTTCTCTCAGCCCTGCAGGGTCGACCCTCCTTTACCTCCTACACATCCCAAACCCCCCAggtccaacacaaacacacagacacacccgcTGACACCCCAACAGGTAGGAGCAGCGGCTAGTGGCTGGTATGAATATGGCTAAGATGTATCTTTTCCTCTAagtaatcactgatctgacaAGGAAAAACAATTCAGTGGAATCCTGTTTTTTCTCTTCTCCAATCCCGTTCAGAAAAGTGATTACTTCAATTAAAATGGCTGTAATGCTTTTATAAGGTTTTCCATCAACTTCAGGGTTGAGAGTACGAATGAATGATGGAGAAAAGTATTGAGTTGACTAGTCATTAGTTGAACAAGTTAGATGGTTAAGTAGTGGGATGTTGCCTAGTTACCAGGGAGAAAGACACTTAAAACATAGAGGCAGTCCAACGGCAGGATTTTCAGGCCTACTACACTGTACCAAGGTCTTTCAGTTTGTTATTTTCACCTACAGTATGTGTGCAGAGATGGGTCAAGATGGGTCTTTCTTTATACTGGATCCTCTGCGACTTGCCATAAAAGCGTTATTTCCATTGCTGTAATTCCTGTAGTTTGTTGATAGCCTTTTTTCAATAATGTTTCAGTTGATGGAGAGTGAATACAGTGGTCtgtgagagagaaaa
>XM_036980111.1
GCTCTTTccttacattagctagctagctagtagtcagtGTTTTGGTTAAATGTATGCCAAAGTGGTCCCTCCAGAGAAAAGCTCAAGTGATTGTATCTTCATATATTTCAGACAGTTCGTGTGAGCTCTTCTACGAGAACATTAGCAGGAAGCACGcaAGTGTGAAGACCATGGTGGTGAATCTCTGCCTGCCACATTTCAAGACCACCATCCagtgtgacaagCTGTGTGCAGATGGGTATGACGTCACCAACCTCCTATCGGCCGACCCAACAGTCCGGAGGCGGGGTTTTAAGCTGGAGTACTTCCTTCGGCCACCTGTTCAGGTGACACTGCAGTTTGGTTTCCAGGTGGAAGTGTGTCGGGTGGATGTGGAGCTGTGGCCCTGGGGGATGGACCGTGGACAGGCCTGCAAGAGGCTGGAGATCAGCACCAGCTCTGATCCCCCACTCCCTCACAACCACAGCCTAGAGCAGGGCCAAAGTCAGGTCCAACAAGGCCAAGAGAAGGGCCAGCAATGGGATCAAGCCAAGTCCCAATTCAAAGGTCACCAATGGAGCCTCCAGGCCCAACAATGGAGCCTACAAGGCCAGGAGAAGAGCCAGCAATGGGCCCAACGTGGCCAAATTCAGAGTCACACAGACACCAGCCAGGGGGATTTCCGCCTAGTGGGACGCTGTGAACTAAGAGAAGAGACCCATGTCAGTTTCTCCCATCCCTGTTTCCGCCCGcgccctccctttccctccctgccACCGCCCCCCCGAGAGGGGTGTAGACAAGAGGAGCTGTGGAGCAGGGGGCCGCTCTCACTAGGCTCTGTGAAGCAGCTCCGTGTGTCAGTGCCGTACGGTGCGGGTGCCTCCGCGATGGGGCTCAAGGCACTGGCAGTGTGGGGGCTGCCTTCTCGCTGCTGCCCCCCAGAGGAGGCGGAGAGGGTGAGAATAGCACATGAGAATGCTAGCCTGAGACCAGCGCCACAGCTTAGCCACTTGGCATCAGCGCAGTCTCCACCTGTCGTTCAACCACAGCCACTGTCACAGACGACAACAGCAACTAGCCTTCTGCAGGTCCCTGAGGATTTCCTGGACCCCCTGACCCAGGAAGTGATGCTGCTCCCTATGCTGCTGCCCAGCGGAGTGTCTGTGGACAGCTCCACTCTGGAGGAGTACCAGAGGAGGGAAGCTACCTGGGGTCGTGTCCCCAACGACCCCTTCACCGGTGTCCCCTTCATCCCTGAGGCACAGGCCCTCCCCAACCCCCACCTGAAGAGCCGCATCGACCGCTTCCTGCTTCagacagggttagaggtcagggaggGGATGGTGGGGAGGCAGGTCCAGGGGGAGAGTCCGCACACCTCCAGGCTCATACCCCCAGAGAGGACTGGGGACAGTGGGGACTCTGCTgtcactactgctgctgctgctatagaGTCAGCCAACCACCAGGGTGCACTTAGCAGAAACAGTGGGACACTCGCACAGACTACCCAAAAACGTGCAGAAAGTGTAAATACTGAGAGGAGCCACTCTACACAGCAAAGGGGAACCGGAGCTTTTAACAACAGGGTGAAGAATGGGAAGGACCGGTGTGCTGGTAAAGTTGGTCATAAAGAAGGGGTAGTGGATAGAGTGAGTCCCCAGGATATAGGGCCAGATTTGgggagtaggaggaagagagagctgGAGGTTTGGGCCACTCTGATCCGCTCTAAGGGAAAGGGTGAGCCCACCGCGGCCAAAGCAGCCTCTGCTAGTGCTGGTCACGCCAAGGAGCTACTTCCTGACTCGAAAAGACTAAGAACAGACACAAACTCTACTATCTCCACAGCCACCGTTCCCAGCGGTAGCTCCCATGAGCATTGTTCGTCTGCCAGTCTAGACCATGAGCAGCGTTTGTCTGCCAGTCTAGACCAGGCCCTTCTCTCAGCCCTGCAGGGTCGACCCTCCTTTACCTCCTACACATCCCAAACCCCCCAggtccaacacaaacacacagacacacccgcTGACACCCCAACAGCTTTTCCtatttctctccttcccccccttctctctccccttccctttctctctctcccaggtgaGAACAGGTGTGGTTCATGTTCCTGCTCTCTGTCCGTCTACTCGACCTCTCCGTCAGCATACCGCCTGCCCTGTGGTCACTTCCTGTGCCGCCCCTGCCTACACAGGAAGTCCCGCCCACTTGTCACCACAGCAATGCCCAATCACATCCTATGTCCCACCTGCAATATCCCTGCCTCTTCCAGTAACATCACACGCGTGCATCACTGAATGAAAAAATGTGTGGCATTAACCACTGAACAACCCTACTCACTGAAAACGTGTGTTGTTAACCACCACCGGACTCCCACTCACTGTACATGCCTGTGCTCTTCACTGCAAATGTGAGGGGTGGACATTGGAGGAAACAGATTACAATGGGACTCTTTATTATCCCTTGGGCCTTGATAAGCAAATACACCTGTCTTGTGCTGCCCCTCTACCCCACTCTCCAACAGAAGTCATTAAAACGTTTACAGACTAAACTTCTTAAA
>TU574787
ACCTCCAGGCTCATACCCCCAGAGAGGACTGGGGACAGTGGGGACTCTGCTgtcactactgctgctgctgctatagaGTCAGCCAACCACCAGGGTGCACTTAGCAGAAACAGTGGGACACTCGCACAGACTACCCAAAAACGTGCAGAAAGTGTAAATACTGAGAGGAGCCACTCTACACAGCAAAGGGGAACCGGAGCTTTTAACAACAGGGTGAAGAATGGGAAGGACCGGTGTGCTGGTAAAGTTGGTCATAAAGAAGGGGTAGTGGATAGAGTGAGTCCCCAGGATATAGGGCCAGATTTGgggagtaggaggaagagagagctgGAGGTTTGGGCCACTCTGATCCGCTCTAAGGGAAAGGGTGAGCCCACCGCGGCCAAAGCAGCCTCTGCTAGTGCTGGTCACGCCAAGGAGCTACTTCCTGACTCGAAAAGACTAAGAACAGACACAAACTCTACTATCTCCACAGCCACCGTTCCCAGCGGTAGCTCCCATGAGCATTGTTCGTCTGCCAGTCTAGACCATGAGCAGCGTTTGTCTGCCAGTCTAGACCAGGCCCTTCTCTCAGCCCTGCAGGGTCGACCCTCCTTTACCTCCTACACATCCCAAACCCCCCAggtccaacacaaacacacagacacacccgcTGACACCCCAACAGCTTTTCCtatttctctccttcccccccttctctctccccttccctttctctctctcccaggtgaGAACAGGTGTGGTTCATGTTCCTGCTCTCTGTCCGTCTACTCGACCTCTCCGTCAGCATACCGCCTGCCCTGTGGTCACTTCCTGTGCCGCCCCTGCCTACACAGGAAGTCCCGCCCACTTGTCACCACAGCAATGCCCAATCACATCCTATGTCCCACCTGCAATATCCCTGCCTCTTCCAGTAACATCACACGCGTGCATCACTGAATGAAAAAATGTGTGGCATTAACCACTGAACAACCCTACTCACTGAAAACGTGTGTTGTTAACCACCACCGGACTCCCACTCACTGTACATGCCTGTGCTCTTCACTGCAAATGTGAGGGGTGGACATTGGAGGAAACAGATTACAATGGGACTCTTTATTATCCCTTGGGCCTTGATAAGCAAATACACCTGTCTTGTGCTGCCCCTCTACCCCACTCTCCAACAGAAGTCATT
>TU574788
ACCTCCAGGCTCATACCCCCAGAGAGGACTGGGGACAGTGGGGACTCTGCTgtcactactgctgctgctgctatagaGTCAGCCAACCACCAGGGTGCACTTAGCAGAAACAGTGGGACACTCGCACAGACTACCCAAAAACGTGCAGAAAGTGTAAATACTGAGAGGAGCCACTCTACACAGCAAAGGGGAACCGGAGCTTTTAACAACAGGGTGAAGAATGGGAAGGACCGGTGTGCTGGTAAAGTTGGTCATAAAGAAGGGGTAGTGGATAGAGTGAGTCCCCAGGATATAGGGCCAGATTTGgggagtaggaggaagagagagctgGAGGTTTGGGCCACTCTGATCCGCTCTAAGGGAAAGGGTGAGCCCACCGCGGCCAAAGCAGCCTCTGCTAGTGCTGGTCACGCCAAGGAGCTACTTCCTGACTCGAAAAGACTAAGAACAGACACAAACTCTACTATCTCCACAGCCACCGTTCCCAGCGGTAGCTCCCATGAGCATTGTTCGTCTGCCAGTCTAGACCATGAGCAGCGTTTGTCTGCCAGTCTAGACCAGGCCCTTCTCTCAGCCCTGCAGGGTCGACCCTCCTTTACCTCCTACACATCCCAAACCCCCCAggtccaacacaaacacacagacacacccgcTGACACCCCAACAGGTAGGAGCAGCGGCTAGTGGCTGGTATGAATATGGCTAAGATGTATCTTTTCCTCTAagtaatcactgatctgacaAGGAAAAACAATTCAGTGGAATCCTGTTTTTTCTCTTCTCCAATCCCGTTCAGAAAAGTGATTACTTCAATTAAAATGGCTGTAATGCTTTTATAAGGTTTTCCATCAACTTCAGGGTTGAGAGTACGAATGAATGATGGAGAAAAGTATTGAGTTGACTAGTCATTAGTTGAACAAGTTAGATGGTTAAGTAGTGGGATGTTGCCTAGTTACCAGGGAGAAAGACACTTAAAACATAGAGGCAGTCCAACGGCAGGATTTTCAGGCCTACTACACTGTACCAAGGTCTTTCAGTTTGTTATTTTCACCTACAGTATGTGTGCAGAGATGGGTCAAGATGGGTCTTTCTTTATACTGGATCCTCTGCGACTTGCCATAAAAGCGTTATTTCCATTGCTGTAATTCCTGTAGTTTGTTGATAGCCTTTTTTCAATAATGTTTCAGTTGATGGAGAGTGAATACAGTGGTCtgtgagagagaaaataaaaacgGAACAGATACTCATTCAAGGTTATATGTACTGCTCAATacatgttctctttctctccttcaccctctatAGCTTTTCCtatttctctccttcccccccttctctctccccttccctttctctctctcccaggtgaGAACAGGTGTGGTTCATGTTCCTGCTCTCTGTCCGTCTACTCGACCTCTCCGTCAGCATACCGCCTGCCCTGTGGTCACTTCCTGTGCCGCCCCTGCCTACACAGGAAGTCCCGCCCACTTGTCACCACAGCAATGCCCAATCACATCCTATGTCCCACCTGCAATATCCCTGCCTCTTCCAGTAACATCACACGCGTGCATCACTGAATGAAAAAATGTGTGGCATTAACCACTGAACAACCCTACTCACTGAAAACGTGTGTTGTTAACCACCACCGGACTCCCACTCACTGTACATGCCTGTGCTCTTCACTGCAAATGTGAGGGGTGGACATTGGAGGAAACAGATTACAATGGGACTCTTTATTATCCCTTGGGCCTTGATAAGCAAATACACCTGTCTTGTGCTGCCCCTCTACCCCACTCTCCAACAGAAGTCATT

Function

NR:

description
RING finger protein 37-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980112.1 False 2584 mRNA 0.53 6 40500657 40505498
XM_036980111.1 False 2560 mRNA 0.56 7 40500657 40506112
TU574787 False 1174 lncRNA 0.53 3 40504114 40506084
TU574788 True 1812 lncRNA 0.48 2 40504114 40506084

Neighbor

gene id symbol gene type direction distance location
LOC110525957 LOC106585182 coding upstream 10805 40476037 ~ 40489852 (+)
LOC110525958 LOC106585182 coding upstream 24749 40469471 ~ 40475908 (+)
LOC110515135 fabpl coding upstream 48495 40449567 ~ 40452162 (+)
LOC110525956 fabpl coding upstream 59746 40438659 ~ 40440911 (+)
LOC110526900 fabpl coding upstream 83213 40414867 ~ 40417444 (+)
avp neu4 coding downstream 11479 40517591 ~ 40519539 (+)
ccl27a ccl28 coding downstream 14862 40520974 ~ 40524282 (+)
slc35d2 LOC106585185 coding downstream 21726 40527838 ~ 40533844 (+)
fbxl17 fbxl17 coding downstream 62525 40568637 ~ 40886427 (+)
efna5b LOC106585191 coding downstream 469267 40975379 ~ 41084448 (+)
G506247 NA non-coding upstream 7425 40492027 ~ 40493232 (+)
G506248 NA non-coding upstream 8889 40491346 ~ 40491768 (+)
G506249 NA non-coding upstream 9739 40490578 ~ 40490918 (+)
G506254 NA non-coding upstream 23434 40477015 ~ 40477223 (+)
G506251 NA non-coding upstream 26518 40473106 ~ 40474139 (+)
G506280 NA non-coding downstream 34389 40540501 ~ 40540903 (+)
G506281 LOC106585187 non-coding downstream 40201 40544863 ~ 40547513 (+)
G506336 NA non-coding downstream 131721 40637833 ~ 40639089 (+)
G506382 NA non-coding downstream 193948 40700060 ~ 40700389 (+)
LOC110525949 LOC106585178 other upstream 241607 40256994 ~ 40259050 (+)
G506095 atp5a1 other upstream 296771 40196800 ~ 40203886 (+)
G505988 NA other upstream 537559 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 752177 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 820626 39673964 ~ 39680031 (+)
G506285 NA other downstream 59955 40566067 ~ 40566429 (+)
G507768 LOC105030512 other downstream 963439 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1623113 42129225 ~ 42131940 (+)

Expression

LOC110525959(LOC106585184) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110525959(LOC106585184) Expression in each Bioproject

Bar chart with 21 bars.
LOC110525959(LOC106585184) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network