ccl27a (ccl28)


Basic Information

Item Value
gene id ccl27a
gene name ccl28
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40520974 ~ 40524282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606494.2
CCACAGCGATAGGAGGGGGGAGGAATTCGGTATAAATTCTGATgagtttcactctctctctcactcccgctGTCACCATGGATCTTAGAGTGATGGTGATGCTGCTCTTTCTGTGTGCTCTGGCCATCACAACCACTGAAGGGGGCATTCCTAAATGCTGTGTGACGACATCTATGGACATTCCCACCAATGTGCTGAGGAaggtggagagagcagagatgcagagaaacaATGGTGCCTGTGAGATCAACGCACTCGTGCTGCACGTGAAAGGGAAGAAGTTATGTGCCCACCCGAAGGTAAAGAGAAAGCTGAAGAGGATGCAGAGAAAAAAGGACGGAAAACAGAAAAGGCATTAGTGCTCTGTGAAGTGAGGGAACTTTTTAATGTGCGGCTAATCCCCTTGTGGACAGACTACGTAAACATAACTGGCACCTGACAAAATTATGCAACATTTTACTTCTAGGTTAACTGAGATTAATGTGCAGCAGCTTGACTTTTCTTTCATGTCTTTTTAGACATTTTCCTTGGATATCATTATGTGTTTTGGAGGAGTTTTGTAAAAGCATTACTATGTGTGTGAGGCAGAAACCTGTGGTGTGTGTAATAAAAATCTAATACATGTCAACATGTAATCCACCAACTAATCTATAGCATTCGCAAAACTGTTTTCTACTTATTCTTTGTATAAATAATCAAGAGCTGTGATATCTGAAATAAAATCTATACTTATCCCAAAA

Function

symbol description
ccl28 Enables chemokine activity. Involved in several processes, including cytolysis in other organism; negative regulation of leukocyte tethering or rolling; and positive regulation of cell-matrix adhesion. Located in extracellular space. Colocalizes with secretory granule. Biomarker of atopic dermatitis.

NR:

description
C-C motif chemokine 28-like

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0060326 cell chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606494.2 True 740 mRNA 0.42 3 40520974 40524282

Neighbor

gene id symbol gene type direction distance location
avp neu4 coding upstream 1435 40517591 ~ 40519539 (+)
LOC110525959 LOC106585184 coding upstream 14862 40500657 ~ 40506112 (+)
LOC110525957 LOC106585182 coding upstream 31122 40476037 ~ 40489852 (+)
LOC110525958 LOC106585182 coding upstream 45066 40469471 ~ 40475908 (+)
LOC110515135 fabpl coding upstream 68812 40449567 ~ 40452162 (+)
slc35d2 LOC106585185 coding downstream 3556 40527838 ~ 40533844 (+)
fbxl17 fbxl17 coding downstream 44355 40568637 ~ 40886427 (+)
efna5b LOC106585191 coding downstream 451097 40975379 ~ 41084448 (+)
LOC110525969 NA coding downstream 658566 41182848 ~ 41188172 (+)
LOC110525974 selenop coding downstream 934005 41458287 ~ 41461918 (+)
G506247 NA non-coding upstream 27742 40492027 ~ 40493232 (+)
G506248 NA non-coding upstream 29206 40491346 ~ 40491768 (+)
G506249 NA non-coding upstream 30056 40490578 ~ 40490918 (+)
G506254 NA non-coding upstream 43751 40477015 ~ 40477223 (+)
G506280 NA non-coding downstream 16219 40540501 ~ 40540903 (+)
G506281 LOC106585187 non-coding downstream 22031 40544863 ~ 40547513 (+)
G506336 NA non-coding downstream 113551 40637833 ~ 40639089 (+)
G506382 NA non-coding downstream 175778 40700060 ~ 40700389 (+)
LOC110525949 LOC106585178 other upstream 261924 40256994 ~ 40259050 (+)
G506095 atp5a1 other upstream 317088 40196800 ~ 40203886 (+)
G505988 NA other upstream 557876 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 772494 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 840943 39673964 ~ 39680031 (+)
G506285 NA other downstream 41785 40566067 ~ 40566429 (+)
G507768 LOC105030512 other downstream 945269 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1604943 42129225 ~ 42131940 (+)

Expression


Co-expression Network