slc35d2 (LOC106585185)


Basic Information

Item Value
gene id slc35d2
gene name LOC106585185
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40527838 ~ 40533844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980113.1
TATGTAATTCCCTTCGCAAATTTCAGCCTGTTTGAACGGTCCCGGCCCACTCTAATTAACGTCCTCCCCTTTTACCAAATGATCGCGACAAAGCCTAAGTGAAAGCAACCGAgatcattatatattttttgcgaTAACAACTATTCTTGAACTAATGTCTGCCATGTCTACCTCAGCTAATTTTCCAGAACCCGAACATTCCGGACTGTTAAAGTTTTTATCTGCTGCGTTCTACGCTGTCAGTTCTTTTTTGATCATTGTTGTGAACAAAACGATTCTCACAAACTACAGATTTCCCTCCTACATGTTTCTAGGAATtggccagatgacTACTACAATCCTCATTCTCTATTTTGCTAAAATGAACCAAACAGTTCACTTCCAAGACTTTGACAGAAGTGTTCTCATCAAAATCTTCCCCCTACCTTTGCTGTATGTTGGAAACCACATAACAGGACTGGCTAGTACAAAGAAGTTAAGCTTACCCATGTTCACGGTATTAAGGAAGTTCACCATATTGATGACAATGATCATGGAAGCAAGGCTATTGAGAAAAACATTCCCTAATCGTCTTATCTACAGTGTTCTGGCCATCATTTTTGGAGCTTTGGTGGCTGCCAGCTCTGACTTGGCCTTTGATGCAGAGGGCTACACGTTCATTCTGCTTAATGATGTCTTCACTGCTGCCAGTGGTGTGTACACCAAGAAGAAGCTTGGAACTGAGGGTCTTGGAAAATATGGGATCTTATTTTACAATGCATTCATCATCGTCATCCCAACTCTTCTGGCAAGTGCATTTACTGGGGATTTAGACAAGGCCATCACATATGAACACTGGTTGAATGCCCCCTTTGTTTCCTGCTTCCTTATTTCCTGCCTCATGGGGTTTGTGCTGATGTATTCCATAGTGCTGTGTAGCCACTACAACTCTGCACTGACCACCACGGTGGTGGGAGCAATTAAGAACGTTGCTGTGGCCTACATCGGCATGTTTTTAGGTGGAGACTACCTGTTTTCATGGACCAACTTCCTGGGGTTAAATATTTGTATATCAGGGGGACTTGTGTATTCCTACCTGACGTTCCACAGCAGCAGCAAACCATCCCAAAGCGATGAAAGCGGAATAAAGGGAAACCAGGACCAGCTGATCATTCCCATGATGGAAGATTCCATAGACAGACTCCCTGTGAAATAAGTGAATAAACCTGTGATGAACCAGGTGAGACATGATGCCGTAGTCTTTTTCTGTACTGTAAGCAGTAAACACTGCCTTTGGTATCGGCTCCATAGTGGAGCAAAAGTTATAACATTTTGTAGACTTAAATGATCATTATGTTAAATTATAATCATATTTTTGACCAATGTTCATTATTTTGTGTTGCAAGTTGAAACCTGCAATTCAATTGTCTTGTCAAGGGTTTAGCTAATCTATAGGTGTTATTACACATGTAAATAGCAATACTATATGTATTATTACACATGTAAATAGCAATACTATATGTATTATTGCACATGCAAATAGCAATACTATATGTATTATTACACATGCAAATAACAATACTATATGTATTATTACACATGCAAATAACAATACTATATGTATTATTACACATGTAAATAGCAATACTATATGTATTATTGCACATGCAAATAGCAATACTATATGTATTATTACACATGCAAATAGCAATACTATATGTATTATTACACATGTAAATAGCAATAGTATATGTATTATTGCACATGCAAATAGCAATACTATATGTATTATTACACATATAAATAGCAATACTATATGTATTATTACACATGTAAATAGCAATGACCACTAGTAGTTACTAACCACCTCTTGAAACCAATGTGTGTGACTGAAagacatactgtagtgtagtgtatagagCTGTATGTTCAATGAGAACTAAACTATAGTTTAGTGATGCAGCTCTTAACAATCAATGAACCTAACTATAAACGTGAAGAAATGAAACTAGCTCCTAGACCATGATCAATGATGGTGTTTATTGAAGACCAACTAGTACCAACAGTGGACTGCCTATAAAGAGAATCTCGGCTTTAAACACCAACAATGTCATCTCCACAGAGCAAGTCAGAACATTTCCTATCAAGGCCTAAAACACACCAATTCTGACTATGGTCTGTTTAACACAGTGGGAGAGAAAGTGAATTTCACAATCATCTACACATGAACTTCAAGCTCTTGTACTGTAGATTGTGTGCAGTCatttttctccttctctttctctaacAAACAAGTTAGGGAATATATTAACTGACGAAACATTTTGAAACCAAATAATAAACAATGAGTTAGAAAAACAAGATATATACATTATACTTGGGTATAATAACACATAATTTGGTGCTTTGACTGTTGTCCAGATTAGCCTGTACTCCATCAAAAGATGTATAGGACACGTTATCTCACTGGACAGTGTGGTCCACTCAACGTCTACTTTTAATTACATTTGTTTGAATTGTAAAGTaaagtgaattcaatgtgaaa
>XM_021606496.2
ATTTCCCTCCTACATGTTTCTAGGAATtggccaggtaggctatactgtatCTCAATTCACGATTCTTGAGGTAGAAGTTGCACCACAGAGATatgacTACTACAATCCTCATTCTCTATTTTGCTAAAATGAACCAAACAGTTCACTTCCAAGACTTTGACAGAAGTGTTCTCATCAAAATCTTCCCCCTACCTTTGCTGTATGTTGGAAACCACATAACAGGACTGGCTAGTACAAAGAAGTTAAGCTTACCCATGTTCACGGTATTAAGGAAGTTCACCATATTGATGACAATGATCATGGAAGCAAGGCTATTGAGAAAAACATTCCCTAATCGTCTTATCTACAGTGTTCTGGCCATCATTTTTGGAGCTTTGGTGGCTGCCAGCTCTGACTTGGCCTTTGATGCAGAGGGCTACACGTTCATTCTGCTTAATGATGTCTTCACTGCTGCCAGTGGTGTGTACACCAAGAAGAAGCTTGGAACTGAGGGTCTTGGAAAATATGGGATCTTATTTTACAATGCATTCATCATCGTCATCCCAACTCTTCTGGCAAGTGCATTTACTGGGGATTTAGACAAGGCCATCACATATGAACACTGGTTGAATGCCCCCTTTGTTTCCTGCTTCCTTATTTCCTGCCTCATGGGGTTTGTGCTGATGTATTCCATAGTGCTGTGTAGCCACTACAACTCTGCACTGACCACCACGGTGGTGGGAGCAATTAAGAACGTTGCTGTGGCCTACATCGGCATGTTTTTAGGTGGAGACTACCTGTTTTCATGGACCAACTTCCTGGGGTTAAATATTTGTATATCAGGGGGACTTGTGTATTCCTACCTGACGTTCCACAGCAGCAGCAAACCATCCCAAAGCGATGAAAGCGGAATAAAGGGAAACCAGGACCAGCTGATCATTCCCATGATGGAAGATTCCATAGACAGACTCCCTGTGAAATAAGTGAATAAACCTGTGATGAACCAGGTGAGACATGATGCCGTAGTCTTTTTCTGTACTGTAAGCAGTAAACACTGCCTTTGGTATCGGCTCCATAGTGGAGCAAAAGTTATAACATTTTGTAGACTTAAATGATCATTATGTTAAATTATAATCATATTTTTGACCAATGTTCATTATTTTGTGTTGCAAGTTGAAACCTGCAATTCAATTGTCTTGTCAAGGGTTTAGCTAATCTATAGGTGTTATTACACATGTAAATAGCAATACTATATGTATTATTACACATGTAAATAGCAATACTATATGTATTATTGCACATGCAAATAGCAATACTATATGTATTATTACACATGCAAATAACAATACTATATGTATTATTACACATGCAAATAACAATACTATATGTATTATTACACATGTAAATAGCAATACTATATGTATTATTGCACATGCAAATAGCAATACTATATGTATTATTACACATGCAAATAGCAATACTATATGTATTATTACACATGTAAATAGCAATAGTATATGTATTATTGCACATGCAAATAGCAATACTATATGTATTATTACACATATAAATAGCAATACTATATGTATTATTACACATGTAAATAGCAATGACCACTAGTAGTTACTAACCACCTCTTGAAACCAATGTGTGTGACTGAAagacatactgtagtgtagtgtatagagCTGTATGTTCAATGAGAACTAAACTATAGTTTAGTGATGCAGCTCTTAACAATCAATGAACCTAACTATAAACGTGAAGAAATGAAACTAGCTCCTAGACCATGATCAATGATGGTGTTTATTGAAGACCAACTAGTACCAACAGTGGACTGCCTATAAAGAGAATCTCGGCTTTAAACACCAACAATGTCATCTCCACAGAGCAAGTCAGAACATTTCCTATCAAGGCCTAAAACACACCAATTCTGACTATGGTCTGTTTAACACAGTGGGAGAGAAAGTGAATTTCACAATCATCTACACATGAACTTCAAGCTCTTGTACTGTAGATTGTGTGCAGTCatttttctccttctctttctctaacAAACAAGTTAGGGAATATATTAACTGACGAAACATTTTGAAACCAAATAATAAACAATGAGTTAGAAAAACAAGATATATACATTATACTTGGGTATAATAACACATAATTTGGTGCTTTGACTGTTGTCCAGATTAGCCTGTACTCCATCAAAAGATGTATAGGACACGTTATCTCACTGGACAGTGTGGTCCACTCAACGTCTACTTTTAATTACATTTGTTTGAATTGTAAAGTaaagtgaattcaatgtgaaa
>TU574808
TCCTTCTCACAAGTCCACATATCCATGAATATAATGCCAAGGAAACTAGTGTATCAAGATCAATTGTTTTCCGCAGAACGTTGCTGTGGCCTACATCGGCATGTTTTTAGGTGGAGACTACCTGTTTTCATGGACCAACTTCCTGGGGTTAAATATTTGTATATCAGGGGGACTTGTGTATTCCTACCTGACGTTCCACAGCAGCAGCAAACCATCCCAAAGCGATGAAAGCGGAATAAAGGGAAACCAGGACCAGCTGATCATTCCCATGATGGAAGATTCCATAGACAGACTCCCTGTGAAATAAGTGAATAAACCTGTGATGAACCAGGTGAGACATGATGCCG
>TU574811
TCCTTCTCACAAGTCCACATATCCATGAATATAATGCCAAGGAAACTAGTGTATCAAGATCAATTGTTTTCCGCAGAACGTTGCTGTGGCCTACATCGGCATGTTTTTAGGTGGAGACTACCTGTTTTCATGGACCAACTTCCTGGGGTTAAATATTTGTATATCAGGGGGACTTGTGTATTCCTACCTGACGTTCCACAGCAGCAGCAAACCATCCCAAAGCGATGAAAGCGGAATAAAGGGAAACCAGGACCAGCTGATCATTCCCATGATGGAAGATTCCATAGACAGACTCCCTGTGAAATAAGTGAATAAACCTGTGATGAACCAGGTGAGACATGATGCCGTAGTCTTTTTCTGTACTGTAAGCAGTAAACACTGCCTTTGGTATCGGCTCCATAGTGGAGCAAAAGTTATAACATTT

Function

NR:

description
UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980113.1 False 2524 mRNA 0.37 12 40527838 40533844
XM_021606496.2 False 2291 mRNA 0.37 11 40528317 40533844
TU574808 False 347 lncRNA 0.44 2 40532095 40532555
TU574811 True 424 lncRNA 0.43 2 40532095 40532632

Neighbor

gene id symbol gene type direction distance location
ccl27a ccl28 coding upstream 3556 40520974 ~ 40524282 (+)
avp neu4 coding upstream 8299 40517591 ~ 40519539 (+)
LOC110525959 LOC106585184 coding upstream 21726 40500657 ~ 40506112 (+)
LOC110525957 LOC106585182 coding upstream 37986 40476037 ~ 40489852 (+)
LOC110525958 LOC106585182 coding upstream 51930 40469471 ~ 40475908 (+)
fbxl17 fbxl17 coding downstream 34793 40568637 ~ 40886427 (+)
efna5b LOC106585191 coding downstream 441535 40975379 ~ 41084448 (+)
LOC110525969 NA coding downstream 649004 41182848 ~ 41188172 (+)
LOC110525974 selenop coding downstream 924443 41458287 ~ 41461918 (+)
LOC118964869 NA coding downstream 981895 41515545 ~ 41522572 (+)
G506247 NA non-coding upstream 34606 40492027 ~ 40493232 (+)
G506248 NA non-coding upstream 36070 40491346 ~ 40491768 (+)
G506249 NA non-coding upstream 36920 40490578 ~ 40490918 (+)
G506254 NA non-coding upstream 50615 40477015 ~ 40477223 (+)
G506280 NA non-coding downstream 6657 40540501 ~ 40540903 (+)
G506281 LOC106585187 non-coding downstream 12469 40544863 ~ 40547513 (+)
G506336 NA non-coding downstream 103989 40637833 ~ 40639089 (+)
G506382 NA non-coding downstream 166216 40700060 ~ 40700389 (+)
G506417 NA non-coding downstream 230645 40764489 ~ 40766041 (+)
LOC110525949 LOC106585178 other upstream 268788 40256994 ~ 40259050 (+)
G506095 atp5a1 other upstream 323952 40196800 ~ 40203886 (+)
G505988 NA other upstream 564740 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 779358 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 847807 39673964 ~ 39680031 (+)
G506285 NA other downstream 32223 40566067 ~ 40566429 (+)
G507768 LOC105030512 other downstream 935707 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1595381 42129225 ~ 42131940 (+)

Expression


Co-expression Network